| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF004C19 | Sequence | 329 | 013464 (3) | ref|XP_006346399.1| | 3e-29 | PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum] | 355 | 009979 (4) | ref|XP_008226124.1| | 4e-07 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67 |
| JMSF008A24 | Sequence | 326 | 013464 (3) | ref|XP_006346399.1| | 8e-63 | PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum] | 772 | 012523 (5) | ref|XP_004230770.1| | 3e-117 | PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum] |
| JMSF036F18 | Sequence | 580 | 013464 (3) | ref|XP_006346399.1| | 3e-64 | PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum] | 763 | 012523 (5) | ref|XP_004230770.1| | 2e-113 | PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMSF036F18+ TCCTCAGTGCAGAAAGCCTGGACCTCGAATGACTCTGCGT
____________________________________________________________
consensus TCCTCAGTGCAGAAAGCCTGGACCTCGAATGACTCTGCGT
. : . : . : . : . : . :
JMSF008A24+ TTCAGCCGGCTGNTTCGGGGT
JMSF036F18+ TGAAGACGCCTGGCTTAGCAAGGACCGGACCAAACCCGGTTCAGCCGGCTGTTTCGGGGT
____________________________________________________________
consensus TGAAGACGCCTGGCTTAGCAAGGACCGGACCAAACCCGGTTCAGCCGGCTGTTTCGGGGT
. : . : . : . : . : . :
JMSF008A24+ AGGAATCCGCTCAACTCCGAAAGCCCGGTTCGCCACACACCATTCCTGTATTAGCCGCCG
JMSF036F18+ AGGAATCCGCTCAACTCCGAAAGCCCGGTTCGCCACACACCATTCCTGTATTAGCCGCCG
____________________________________________________________
consensus AGGAATCCGCTCAACTCCGAAAGCCCGGTTCGCCACACACCATTCCTGTATTAGCCGCCG
. : . : . : . : . : . :
JMSF004C19+ GGACACGT
JMSF008A24+ GAGAGTATGGTTTGGAATCAAAGTAAAGTCCGTGAGCGGCGCTCTGGTTACCGGACACGT
JMSF036F18+ GAGAGTATGGTTTGGAATCAAAGTAAAGTCCGTGAGCGGCGCTCTGGTTACCGGACACGT
____________________________________________________________
consensus GAGAGTATGGTTTGGAATCAAAGTAAAGTCCGTGAGCGGCGCTCTGGTTACCGGACACGT
. : . : . : . : . : . :
JMSF004C19+ AGTATTCCCGGTAGCCACCCAGGACTCTATGCTTGCCCGATCATACGTCTGACCGGTACA
JMSF008A24+ AGTATTCCCGGTAGCCACCCAGGACTCTATGCTTGCCCGATCATACGTCTGACCGGTACA
JMSF036F18+ AGTATTCCCGGTAGCCACCCAGGACTCTATGCTTGCCCGATCATACGTCTGACCGGTACA
____________________________________________________________
consensus AGTATTCCCGGTAGCCACCCAGGACTCTATGCTTGCCCGATCATACGTCTGACCGGTACA
. : . : . : . : . : . :
JMSF004C19+ CACCGTCACCGGATCCCGCATCAGCTCCAAGGACACCGGACACCGGAAGTGATACGGGAT
JMSF008A24+ CACCGTCACCGGATCCCGCATCAGCTCCAAGGACACCGGACACCGGAAGTGATACGGGAT
JMSF036F18+ CACCGTCACCGGATCCCGCATCAGCTCCAAGGACACCGGACACCGGAAGTGATACGGGAT
____________________________________________________________
consensus CACCGTCACCGGATCCCGCATCAGCTCCAAGGACACCGGACACCGGAAGTGATACGGGAT
. : . : . : . : . : . :
JMSF004C19+ CTGAATCCC
JMSF008A24+ CTGAATCCCAATATCCAGAGGGTCTAAGCTTCCAGGCATGCTTTCTTTACTCCCGTCTCT
JMSF036F18+ CTGAATCCCAATATCCAGAGGGTCTAAGCTTCCAGGCATGCTTTCTTTACTCCCGTCTCT
____________________________________________________________
consensus CTGAATCCCAATATCCAGAGGGTCTAAGCTTCCAGGCATGCTTTCTTTACTCCCGTCTCT
. : . : . : . : . : . :
JMSF008A24+ ATAT
JMSF036F18+ ATATATCTCTGTGTTCCGTGTTTGTGTTTACTATAAAAAAAGAAAATATGAATCTGAAAA
____________________________________________________________
consensus ATATATCTCTGTGTTCCGTGTTTGTGTTTACTATAAAAAAAGAAAATATGAATCTGAAAA
. : . : . : . : . : . :
JMSF036F18+ ATTCTCTTTAGAACTTTATCGGGGGAAGGCAAGGGGTGGTATACGGATAGAGGAACAGAG
____________________________________________________________
consensus ATTCTCTTTAGAACTTTATCGGGGGAAGGCAAGGGGTGGTATACGGATAGAGGAACAGAG
. : . : . : . : . : . :
JMSF036F18+ GAGCATACCAAACAGGGCGTGGGGGCTTTTTCTCAGAGTTTCTGTTAGATATTGTTCTCC
____________________________________________________________
consensus GAGCATACCAAACAGGGCGTGGGGGCTTTTTCTCAGAGTTTCTGTTAGATATTGTTCTCC