Contig 013456:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035K15Sequence645013456 (2)emb|CDP05943.1|2e-48unnamed protein product [Coffea canephora]776012712 (3)ref|XP_009794387.1|3e-40PREDICTED: serine/threonine-protein kinase 3-like isoform X2 [Nicotiana sylvest
JMSF039I14Sequence655013456 (2)emb|CDP05943.1|2e-78unnamed protein product [Coffea canephora]858012712 (3)ref|XP_006348267.1|2e-47PREDICTED: serine/threonine-protein kinase sid1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF039I14+                                                                  CTTCA
                      ____________________________________________________________
consensus                                                                    CTTCA
 
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JMSF039I14+           CATCACCATTCTTCGACAACAGAATATTTGCCGCTTTAATATCTCTATGAATCTTGCCTT
JMSF035K15+                          ACAACAGAATATTTGCCGCTTTAATATCTCTATGAATCTTGCCTT
                      ____________________________________________________________
consensus             CATCACCATTCTTCGACAACAGAATATTTGCCGCTTTAATATCTCTATGAATCTTGCCTT
 
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JMSF039I14+           CACTGTGTAGGTAATCAATAGCATGGAGCAAATCACGTAAAATACAAGCTATGGATATTT
JMSF035K15+           CACTGTGTAGGTAATCAATAGCATGGAGCAAATCACGTAAAATACAAGCTATGGATATTT
                      ____________________________________________________________
consensus             CACTGTGTAGGTAATCAATAGCATGGAGCAAATCACGTAAAATACAAGCTATGGATATTT
 
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JMSF039I14+           CATCCAATGGTAGATTTGGCTGAATTAGATCAGCAACAGAGCCACCAGCCATATACTCCA
JMSF035K15+           CATCCAATGGTAGATTTGGCTGAATTAGATCAGCAACAGAGCCACCAGCCATATACTCCA
                      ____________________________________________________________
consensus             CATCCAATGGTAGATTTGGCTGAATTAGATCAGCAACAGAGCCACCAGCCATATACTCCA
 
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JMSF039I14+           TGATTATCCATAGCTTAGTGCTTTGGAGGTATGATCCATAATACTCTGTAATATACGGGG
JMSF035K15+           TGATTATCCATAGCTTAGTGCTTTGGAGGTATGATCCATAATACTCTGTAATATACGGGG
                      ____________________________________________________________
consensus             TGATTATCCATAGCTTAGTGCTTTGGAGGTATGATCCATAATACTCTGTAATATACGGGG
 
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JMSF039I14+           ATCGACATTGTTGCAGAACAGCTATTTCCTTCTGAATGTCCTCGATCTCATCCTCTGATT
JMSF035K15+           ATCGACATTGTTGCAGAACAGCTATTTCCTTCTGAATGTCCTCGATCTCATCCTCTGATT
                      ____________________________________________________________
consensus             ATCGACATTGTTGCAGAACAGCTATTTCCTTCTGAATGTCCTCGATCTCATCCTCTGATT
 
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JMSF039I14+           CGTCTAAATCAATAACCTTAATGGCAACTTC-TTTTTTGAGCTCCTTGTCATAACCTTTA
JMSF035K15+           CGTCTAAATCAATAACCTTAATGGCAACTTCTTTTTTTGAGCTCCTTGTCATAACCTTTA
                      ____________________________________________________________
consensus             CGTCTAAATCAATAACCTTAATGGCAACTTCTTTTTTTGAGCTCCTTGTCATAACCTTTA
 
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JMSF039I14+           TATACATCCCCAAATGACCCTCTTCCAATGAGCTCTAGATCACTAAACCTGGATCCTGAA
JMSF035K15+           TATACATCCCCAAATGACCCTCTTCCAATGAGCTCTAGATCACTAAACCTGGATCCTGAA
                      ____________________________________________________________
consensus             TATACATCCCCAAATGACCCTCTTCCAATGAGCTCTAGATCACTAAACCTGGATCCTGAA
 
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JMSF039I14+           ACTTCAATAAGAGCTGCTGCATCAGCCATCCCGAAATAGGGCTCTCCCTCCTCCATCAAA
JMSF035K15+           ACTTCAATAAGAGCTGCTGCATCAGCCATCCCGAAATAGGGCTCTCCCTCCTCCATCAAA
                      ____________________________________________________________
consensus             ACTTCAATAAGAGCTGCTGCATCAGCCATCCCGAAATAGGGCTCTCCCTCCTCCATCAAA
 
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JMSF039I14+           CTCCCTATACAGATACCAAATCAACCCGCTGTGTGGCTT                     
JMSF035K15+           CTCCCTATACAGATACCAAATCAACCCGCTGTGTGGCTTTTAAAACAACATTAGACCACC
                      ____________________________________________________________
consensus             CTCCCTATACAGATACCAAATCAACCCGCTGTGTGGCTTTTAAAACAACATTAGACCACC
 
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JMSF035K15+           AAAAACAATCATCAGTACAACGTCATTTCATTTGGGGCAAGTAGCGCAAATATATATTCA
                      ____________________________________________________________
consensus             AAAAACAATCATCAGTACAACGTCATTTCATTTGGGGCAAGTAGCGCAAATATATATTCA
 
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JMSF035K15+           TCCAGGCACAAGCGTACAAAATTCAAAGGAAGTATAATTCAAGATCTGAAACGTCAAACC
                      ____________________________________________________________
consensus             TCCAGGCACAAGCGTACAAAATTCAAAGGAAGTATAATTCAAGATCTGAAACGTCAAACC