Contig 013450:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001M03Sequence273013450 (12)
JMSF003M15Sequence228013450 (12)746009933 (12)emb|CAB51610.1|2e-93ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]
JMSF004P21Sequence269013450 (12)452009933 (12)emb|CAB52196.1|1e-17ADP-glucose pyrophosphorylase [Ipomoea batatas]
JMSF005C08Sequence267013450 (12)262009933 (12)
JMSF012C15Sequence449013450 (12)gb|AGB85109.1|8e-35ADP-glucose pyrophosphorylase large subunit 1 [Ipomoea batatas]748009933 (12)emb|CAB51610.1|3e-95ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]
JMSF016C24Sequence248013450 (12)764009933 (12)emb|CAB51610.1|1e-73ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]
JMSF016I24Sequence403013450 (12)gb|AGB85109.1|2e-25ADP-glucose pyrophosphorylase large subunit 1 [Ipomoea batatas]792009933 (12)emb|CAB51610.1|5e-90ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]
JMSF033E07Sequence696013450 (12)gb|AGB85109.1|1e-96ADP-glucose pyrophosphorylase large subunit 1 [Ipomoea batatas]734009933 (12)emb|CAB51610.1|3e-94ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]
JMSF034M03Sequence662013450 (12)gb|AGB85109.1|2e-66ADP-glucose pyrophosphorylase large subunit 1 [Ipomoea batatas]698009933 (12)emb|CAB51610.1|4e-81ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]
JMSF035D17Sequence713013450 (12)dbj|BAF47746.1|468ADP-glucose pyrophosphorylase beta subunit IbAGPb1A [Ipomoea batatas]720009933 (12)emb|CAB51610.1|2e-95ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]
JMSF043L18Sequence716013450 (12)gb|AGB85109.1|1e-99ADP-glucose pyrophosphorylase large subunit 1 [Ipomoea batatas]746009933 (12)emb|CAB51610.1|3e-95ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]
JMSF046M10Sequence702013450 (12)gb|AGB85109.1|5e-99ADP-glucose pyrophosphorylase large subunit 1 [Ipomoea batatas]760009933 (12)emb|CAB51610.1|2e-98ADP-glucose pyrophosphorylase large subunit [Ipomoea batatas]

Alignment

This contig is upended


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JMSF035D17+             GAAAGAGTAATATCAGAATTGCGTTCGATGTGATTCTGCACTAAGTCCATGTAATCCA
                      ____________________________________________________________
consensus               GAAAGAGTAATATCAGAATTGCGTTCGATGTGATTCTGCACTAAGTCCATGTAATCCA
 
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JMSF035D17+           TGCGATAAAGTTGATCTCCTGACAGAATAACTATATTATCAATGTCCTTGTTCTTCGCGT
                      ____________________________________________________________
consensus             TGCGATAAAGTTGATCTCCTGACAGAATAACTATATTATCAATGTCCTTGTTCTTCGCGT
 
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JMSF035D17+           CCTCAAAAACCCACGTAAACTGTCTAACAGCATCTGCAGTTCCCTGAAACCAATTCATTC
                      ____________________________________________________________
consensus             CCTCAAAAACCCACGTAAACTGTCTAACAGCATCTGCAGTTCCCTGAAACCAATTCATTC
 
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JMSF035D17+           CCATTTCCCCTTGCGTTTGGGTTGCAGCCAACACCTCAACAAATCCATCTCCGAAGCTCA
JMSF046M10+                                                               GAAGCTCA
JMSF043L18+                                                               GAAGCTCA
                      ____________________________________________________________
consensus             CCATTTCCCCTTGCGTTTGGGTTGCAGCCAACACCTCAACAAATCCATCTCCGAAGCTCA
 
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JMSF035D17+           CACCATTGCCAAAGTAGGTACGGGAAATGTGACGGTTAAGAGAAGCGGAATTGAACTGGG
JMSF033E07+             CCATTGCCAAAGTAGGTACGGGAAATGTGACGGTTAAGAGAAGCGGAATTGAACTGGG
JMSF046M10+           CACCATTGCCAAAGTAGGTACGGGAAATGTGACGGTTAAGAGAAGTGGAATTGAACTGGG
JMSF043L18+           CACCATTGCCAAAGTAGGTACGGGAAATGTGACGGTTAAGAGAAGCGGAATTGAACTGGG
                      ____________________________________________________________
consensus             CACCATTGCCAAAGTAGGTACGGGAAATGTGACGGTTAAGAGAAGCGGAATTGAACTGGG
 
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JMSF035D17+           TGAGCACGAAGATCTTGTTAACCCCGCTGTTGATGCAATTGCTCATCGGAATGTCAATCA
JMSF033E07+           TGAGCACGAAGATCTTGTTAACCCCGCTGTTGATGCAATTGCTCATCGGAATGTCAATCA
JMSF046M10+           TGAGCACGAAGATCTTGTTAACCCCGCTGTTGATGCAATTGCTCATCGGAATGTCAATCA
JMSF043L18+           TGAGCACGAAGATCTTGTTAACCCCGCTGTTGATGCAATTGCTCATCGGAATGTCAATCA
JMSF034M03+                                                                     CA
                      ____________________________________________________________
consensus             TGAGCACGAAGATCTTGTTAACCCCGCTGTTGATGCAATTGCTCATCGGAATGTCAATCA
 
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JMSF035D17+           ACCTATAGCATCCTCCAACTGGAACAGCAGGGGTTGCAGCTCGGTTTGTGAGAGGGAATA
JMSF033E07+           ACCTATAGCATCCTCCAACTGGAACAGCAGGGGTTGCAGCTCGGTTTGTGAGAGGGAATA
JMSF046M10+           ACCTATAGCATCCTCCAACTGGAACAGCAGGGGTTGCAGCTCGGTTTGTGAGAGGGAATA
JMSF043L18+           ACCTATAGCATCCTCCAACTGGAACAGCAGGGGTTGCAGCTCGGTTTGTGAGAGGGAATA
JMSF034M03+           ACCTATAGCATCCTCCAACTGGAACAGCAGGGGTTGCAGCTCGGTTTGTGAGAGGGAATA
                      ____________________________________________________________
consensus             ACCTATAGCATCCTCCAACTGGAACAGCAGGGGTTGCAGCTCGGTTTGTGAGAGGGAATA
 
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JMSF035D17+           GTTGTGTCCCTGCACCCCCTCCCAGTATGATTGCCGCCACATTCTTAGGGTTTGCCCGAC
JMSF033E07+           GTTGTGTCCCTGCACCCCCTCCCAGTATGATTGCCGCCACATTCTTAGGGTTTGCCCGAC
JMSF046M10+           GTTGTGTCCCTGCACCCCCTCCCAGTATGATTGCCGCCACATTCTTAGGGTTTGCCCGAC
JMSF043L18+           GTTGTGTCCCTGCACCCCCTCCCAGTATGATTGCCGCCACATTCTTAGGGTTTGCCCGAC
JMSF034M03+           GTTGTGTCCCTGCACCCCCTCCCAGTATGATTGCCGCCACATTCTTAGGGTTTGCCCGAC
                      ____________________________________________________________
consensus             GTTGTGTCCCTGCACCCCCTCCCAGTATGATTGCCGCCACATTCTTAGGGTTTGCCCGAC
 
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JMSF035D17+           GCCTCTCCAATATCGGTGCTTCTACAGTCAGAGTTTCTGTCCCGTTCTCTCTTGTGAGAA
JMSF033E07+           GCCTCTCCAATATCGGTGCTTCTACAGTCAGAGTTTCTGTCCCGTTCTCTCTTGTGAGAA
JMSF046M10+           GCCTCTCCAATATCGGTGCTTCTACAGTCAGAGTTTCTGTCCCGTTCTCTCTTGTGAGAA
JMSF043L18+           GCCTCTCCAATATCGGTGCTTCTACAGTCAGAGTTTCTGTCCCGTTCTCTCTTGTGAGAA
JMSF016I24+                                                                  GAGAA
JMSF012C15+                      ATCGGTGCTTCTACAGTCAGAGTTTCTGTCCCGTTCTCTCTTGTGAGAA
JMSF034M03+           GCCTCTCCAATATCGGTGCTTCTACAGTCAGAGTTTCTGTCCCGTTCTCTCTTGTGAGAA
                      ____________________________________________________________
consensus             GCCTCTCCAATATCGGTGCTTCTACAGTCAGAGTTTCTGTCCCGTTCTCTCTTGTGAGAA
 
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JMSF035D17+           CAGAGAAAGCAACCCCAGGCTTGATCTTCCTCTTATTTTCTTCAAGTTTCAAACTTTTCC
JMSF033E07+           CAGAGAAAGCAACCCCAGGCTTGATCTTCCTCTTATTTTCTTCAAGTTTCAAACTTTTCC
JMSF046M10+           CAGAGAAAGCAACCCCAGGCTTGATCTTCCTCTTATTTTCTTCAAGTTTCAAACTTTTCC
JMSF043L18+           CAGAGAAAGCAACCCCAGGCTTGATCTTCCTCTTATTTTCTTCAAGTTTCAAACTTTTCC
JMSF016I24+           CAGAGAAAGCAACCCCAGGCTTGATCTTCCTCTTATTTTCTTCAAGTTTCAAACTTTTCC
JMSF012C15+           CAGAGAAAGCAACCCCAGGCTTGATCTTCCTCTTATTTTCTTCAAGTTTCAAACTTTTCC
JMSF034M03+           CAGAGAAAGCAACCCCAGGCTTGATCTTCCTCTTATTTTCTTCAAGTTTCAAACTTTTCC
                      ____________________________________________________________
consensus             CAGAGAAAGCAACCCCAGGCTTGATCTTCCTCTTATTTTCTTCAAGTTTCAAACTTTTCC
 
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JMSF035D17+           TGGACTGATTGACCAAGACATTGTTGTTTACACTGCCTCTGATCTTCCCACCAAAAAACC
JMSF033E07+           TGGACTGATTGACCAAGACATTGTTGTTTACACTGCCTCTGATCTTCCCACCAAAAAACC
JMSF046M10+           TGGACTGATTGACCAAGACATTGTTGTTTACACTGCCTCTGATCTTCCCACCAAAAAACC
JMSF043L18+           TGGACTGATTGACCAAGACATTGTTGTTTACACTGCCTCTGATCTTCCCACCAAAAAACC
JMSF016I24+           TGGACTGATTGACCAAGACATTGTTGTTTACACTGCCTCTGATCTTCCCACCAAAAAACC
JMSF012C15+           TGGACTGATTGACCAAGACATTGTTGTTTACACTGCCTCTGATCTTCCCACCAAAAAACC
JMSF034M03+           TGGACTGATTGACCAAGACATTGTTGTTTACACTGCCTCTGATCTTCCCACCAAAAAACC
                      ____________________________________________________________
consensus             TGGACTGATTGACCAAGACATTGTTGTTTACACTGCCTCTGATCTTCCCACCAAAAAACC
 
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JMSF035D17+           CAGTCTCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCAC     
JMSF033E07+           CAGTCTCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
JMSF046M10+           CAGTCTCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
JMSF043L18+           CAGTCTCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
JMSF016I24+           CAGTCTCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
JMSF016C24+                                         TCAAAGTTGCACAAAACTCCATCACAGATC
JMSF001M03+                TCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
JMSF004P21+                    TTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
JMSF012C15+           CAGTCTCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
JMSF005C08+                    TTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
JMSF003M15+                                                             ATCACAGATC
JMSF034M03+           CAGTCTCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
                      ____________________________________________________________
consensus             CAGTCTCTCTTGGCAAATGAGCAGAAGATTTCAAAGTTGCACAAAACTCCATCACAGATC
 
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JMSF033E07+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF046M10+           ACTCC---CTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF043L18+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF016I24+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF016C24+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF001M03+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF004P21+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF012C15+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF005C08+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF003M15+           ACTCCNTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
JMSF034M03+           ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
                      ____________________________________________________________
consensus             ACTCCCTACTAGAAGTTCACGAATAGGATCTGCAAAGCTAAAGCGCCAAGATGCGGTCCC
 
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JMSF033E07+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF046M10+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF043L18+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF016I24+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF016C24+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF001M03+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF004P21+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF012C15+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF005C08+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF003M15+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
JMSF034M03+           CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
                      ____________________________________________________________
consensus             CAAACAAACAAGTGAAAATTCCTAGTACCCAGAAGTGAGAATCCAAGAAAAAAAAGGTGG
 
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JMSF033E07+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF046M10+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF043L18+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF016I24+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF016C24+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF001M03+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF004P21+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF012C15+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF005C08+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF003M15+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
JMSF034M03+           CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
                      ____________________________________________________________
consensus             CAATTGCTGTGCACCCTTGAGCTCTTGCGCTTAAGAAAGGAAAAACAGAACTTCCCTTCT
 
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JMSF033E07+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTT                          
JMSF046M10+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCC                       
JMSF043L18+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCC                       
JMSF016I24+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCCC                      
JMSF016C24+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTG                         
JMSF001M03+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCC                       
JMSF004P21+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCCC                      
JMSF012C15+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCCC                      
JMSF005C08+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTT                          
JMSF003M15+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCCC                      
JMSF034M03+           ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCCACGAGAAATCTTCCAGTTCTTGA
                      ____________________________________________________________
consensus             ATGCAACCGAGCTAGATGGTGGCTTCTCAGCTTTGCCCCGAGAAATCTTCCAGTTCTTGA
 
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JMSF034M03+           TATATATAGTGAGCTCGACAGTAAAAATTTCTGGGTAACGTACTCTCCCAAACTTCCATC
                      ____________________________________________________________
consensus             TATATATAGTGAGCTCGACAGTAAAAATTTCTGGGTAACGTACTCTCCCAAACTTCCATC