| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF023J07 | Sequence | 415 | 013447 (5) | ref|XP_009804803.1| | 7e-59 | PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris] | 679 | 014854 | gb|KHG00821.1| | 5e-71 | Ras-related Rab7 [Gossypium arboreum] |
| JMSF034D09 | Sequence | 591 | 013447 (5) | ref|XP_006434552.1| | 5e-95 | hypothetical protein CICLE_v10002522mg [Citrus clementina] ref|XP_006473152.1| P | 739 | 013447 (5) | ref|XP_002264356.1| | 7e-118 | PREDICTED: ras-related protein Rab7 isoform X1 [Vitis vinifera] ref|XP_010645813 |
| JMSF034J09 | Sequence | 690 | 013447 (5) | ref|XP_006434552.1| | 4e-121 | hypothetical protein CICLE_v10002522mg [Citrus clementina] ref|XP_006473152.1| P | 721 | 013447 (5) | ref|XP_002264356.1| | 2e-100 | PREDICTED: ras-related protein Rab7 isoform X1 [Vitis vinifera] ref|XP_010645813 |
This contig is upended
. : . : . : . : . : . :
rJMSF034J09- AGAACCTCTAATGGAGGTACATAAACTTCCC
____________________________________________________________
consensus AGAACCTCTAATGGAGGTACATAAACTTCCC
. : . : . : . : . : . :
rJMSF034J09- ATTCCAAGCTACATATATTGTCTTCACTATAGTTTTTGCCAACACAAATCCAGCTGCAAA
rJMSF034D09- ATATATTGTCTTCACTATAGTTTTTGCCAACACAAATCCAGCTGCAAA
____________________________________________________________
consensus ATTCCAAGCTACATATATTGTCTTCACTATAGTTTTTGCCAACACAAATCCAGCTGCAAA
. : . : . : . : . : . :
rJMSF034J09- AGTTATAAAACAATAAAGAAATACAAGCAGTTCAGTATGCAGTGGGTGCAAGAAGGATAT
rJMSF034D09- AGTTATAAAACAATAAAGAAATACAAGCAGTTCAGTATGCAGTGGGTGCAAGAAGGATAT
____________________________________________________________
consensus AGTTATAAAACAATAAAGAAATACAAGCAGTTCAGTATGCAGTGGGTGCAAGAAGGATAT
. : . : . : . : . : . :
rJMSF034J09- ATTTCTGCATACTCTTGACTGGAAAAAAGAAAAGAAAAAGGTAACAGTGGAAAAGAATGT
rJMSF034D09- ATTTCTGCATACTCTTGACTGGAAAAAAGAAAAGAAAAAGGTAACAGTGGAAAAGAATGT
____________________________________________________________
consensus ATTTCTGCATACTCTTGACTGGAAAAAAGAAAAGAAAAAGGTAACAGTGGAAAAGAATGT
. : . : . : . : . : . :
rJMSF034J09- GACTGCCATTTTCAAATCAGCACGAACAGCCATTATGTTGCTCTGTTTCTGAAACTGCAT
rJMSF034D09- GACTGCCATTTTCAAATCAGCACGAACAGCCATTATGTTGCTCTGTTTCTGAAACTGCAT
____________________________________________________________
consensus GACTGCCATTTTCAAATCAGCACGAACAGCCATTATGTTGCTCTGTTTCTGAAACTGCAT
. : . : . : . : . : . :
rJMSF034J09- CAGGAATTCCCTGGAAGTATATATCCTGCTCGTGATCATTGGCTATCGCACTTCTTGAAA
rJMSF034D09- CAGGAATTCCCTGGAAGTATATATCCTGCTCGTGATCATTGGCTATCGCACTTCTTGAAA
____________________________________________________________
consensus CAGGAATTCCCTGGAAGTATATATCCTGCTCGTGATCATTGGCTATCGCACTTCTTGAAA
. : . : . : . : . : . :
rJMSF034J09- TATACAAGAATGCCGCATCTACATTAATGTCCTCTCGTGCTGATGTCTCAAAGTAAGGTA
rJMSF034D09- TATACAAGAATGCCGCATCTACATTAATGTCCTCTCGTGCTGATGTCTCAAAGTAAGGTA
____________________________________________________________
consensus TATACAAGAATGCCGCATCTACATTAATGTCCTCTCGTGCTGATGTCTCAAAGTAAGGTA
. : . : . : . : . : . :
rJMSF034J09- TATTTCCTTTGGAAGAGCACCAATCCTTAGCTTTACTTTCAGAGACCACTCGACTATTCC
rJMSF034D09- TATTTCCTTTGGAAGAGCACCAATCCTTAGCTTTACTTTCAGAGACCACTCGACTATTCC
JMSF034J09+ ACCACTCGACTATTCC
JMSF034D09+ TGGAAGAGCACCAATCCTTAGCTTTACTTTCAGAGACCACTCGACTATTCC
____________________________________________________________
consensus TATTTCCTTTGGAAGAGCACCAATCCTTAGCTTTACTTTCAGAGACCACTCGACTATTCC
. : . : . : . : . : . :
rJMSF034J09- CACCATCTATGTCAATTTTGTTTCCCAGTAATATGAAAGGAAAGGTCTTTGGGTTACTTG
rJMSF034D09- CACCATCTATGTCAATTTTGTTTCCCAGTAATATGAAAGGAAAGGTCTTTGGGTTACTTG
JMSF034J09+ CACCATCTATGTCAATTTTGTTTCCCAGTAATATGAAAGGAAAGGTCTTTGGGTTACTTG
JMSF034D09+ CACCATCTATGTCAATTTTGTTTCCCAGTAATATGAAAGGAAAGGTCTTTGGGTTACTTG
____________________________________________________________
consensus CACCATCTATGTCAATTTTGTTTCCCAGTAATATGAAAGGAAAGGTCTTTGGGTTACTTG
. : . : . : . : . : . :
rJMSF034J09- GATTAGCCTGCTTGAGGAATTCCTTGTGCCAGTTGACAAGATTATCAAATGATCGCAACA
rJMSF034D09- GATTAGCCTGCTTGAGGAATTCCTTGTGCCAGTTGACAAGATTATCAAATGATCGCAACA
JMSF034J09+ GATTAGCCTGCTTGAGGAATTCCTTGTGCCAGTTGACAAGATTATCAAATGATCGCAACA
JMFF023J07+ GATTATCAAATGATCGCAACA
JMSF034D09+ GATTAGCCTGCTTGAGGAATTCCTTGTGCCAGTTGACAAGATTATCAAATGATCGCAACA
____________________________________________________________
consensus GATTAGCCTGCTTGAGGAATTCCTTGTGCCAGTTGACAAGATTATCAAATGATCGCAACA
. : . : . : . : . : . :
rJMSF034J09- CATTAACATCATACACCAAAACGCAGCAATCTGCACCTCTGTAAAACGCAACTCCNAGGC
rJMSF034D09- CATTAACATCATACACCAAAACGCAGCAATCTGCACCTCTGTAAAACGCAACTCCAAGGC
JMSF034J09+ CATTAACATCATACACCAAAACGCAGCAATCTGCACCTCTGTAAAACGCAACTCCAAGGC
JMFF023J07+ CATTAACATCATACACCAAAACGCAGCAATCTGCACCTCTGTAAAACGCAACTCCAAGGC
JMSF034D09+ CATTAACATCATACACCAAAACGCAGCAATCTGCACCTCTGTAAAACGCAACTCCAAGGC
____________________________________________________________
consensus CATTAACATCATACACCAAAACGCAGCAATCTGCACCTCTGTAAAACGCAACTCCAAGGC
. : . : . : . : . : . :
rJMSF034J09- TCTGAAACCTCTTCTGCCCAGCGGTATCCCATATTTGTAGTGTCACAAGCCTGTCATCAA
rJMSF034D09- TCTGAAACCTCTCCTGCCCAGCGGTATCCCATATTTGTAGTGTCACAAGCCTGTCATCAA
JMSF034J09+ TCTGAAACCTCTTCTGCCCAGCGGTATCCCATATTTGTAGTGTCACAAGCCTGTCATCAA
JMFF023J07+ TCTGAAACCTCTCCTGCCCAGCGGTATCCCATATTTGTAGTGTCACAAGCCTGTCATCAA
JMSF034D09+ TCTGAAACCTCTCCTGCCCAGCGGTATCCCATATTTGTAGTGTCACAAGCCTGTCATCAA
____________________________________________________________
consensus TCTGAAACCTCTCCTGCCCAGCGGTATCCCATATTTGTAGTGTCACAAGCCTGTCATCAA
. : . : . : . : . : . :
rJMSF034J09- TTAGAAGCTCCTTGGTCACAAAATCAGCTC
rJMSF034D09- TTAGAAGCTCCTTGGTCACAAAATCAGCTCCAATTGTAGCTTTATACTGCTGACTGAATC
JMSF034J09+ TTAGAAGCTCCTTGGTCACAAAATCAGCTCCAATTGTAGCTTTATACTGCTGACTGAATC
JMFF023J07+ TTAGAAGCTCCTTGGTCACAAAATCAGCTCCAATTGTAGCTTTATACTGCTGACTGAATC
JMSF034D09+ TTAGAAGCTCCTTGGTCACAAAATCAGCTCCAATTGTAGCTTTATACTGCTGACTGAATC
____________________________________________________________
consensus TTAGAAGCTCCTTGGTCACAAAATCAGCTCCAATTGTAGCTTTATACTGCTGACTGAATC
. : . : . : . : . : . :
rJMSF034D09- TCTTATGCACATATTGATTCATCAATGACGT
JMSF034J09+ TCTTATGCACATATTGATTCATCAATGACGTTTTCCCAACCCCACTGTCCCCGAGGACGA
JMFF023J07+ TCTTATGCACATATTGATTCATCAATGACGTTTTCCCAACCCCACTGTCCCCGAGGACGA
JMSF034D09+ TCTTATGCACATATTGATTCATCAATGACGTTTTCCCAACCCCACTGTCCCCGAGGACGA
____________________________________________________________
consensus TCTTATGCACATATTGATTCATCAATGACGTTTTCCCAACCCCACTGTCCCCGAGGACGA
. : . : . : . : . : . :
JMSF034J09+ TGACCTTAAGCAA
JMFF023J07+ TGACCTTAAGCAA
JMSF034D09+ TGACCTTAAGCAAGGATCTTCTGCGTGACATGATGATAATTGGGCAAAGTTTCGATCTTT
____________________________________________________________
consensus TGACCTTAAGCAAGGATCTTCTGCGTGACATGATGATAATTGGGCAAAGTTTCGATCTTT
. : . : . : . : . : . :
JMSF034D09+ ATTCGTTTTCGATTCTGGGTTGTAAATTCTTTAGAGAAATTTTGATTCCGCGCCGGGTGG
____________________________________________________________
consensus ATTCGTTTTCGATTCTGGGTTGTAAATTCTTTAGAGAAATTTTGATTCCGCGCCGGGTGG
. : . : . : . : . : . :
JMSF034D09+ TGGGGTACCTCCGGGATAAGCAGAAACAGAGGACAGCAGAGAGAAGGGGCGCCAGTTCCC
____________________________________________________________
consensus TGGGGTACCTCCGGGATAAGCAGAAACAGAGGACAGCAGAGAGAAGGGGCGCCAGTTCCC