Contig 013423:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011D10Sequence268013423 (2)ref|XP_009595975.1|7e-23PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X2 [Nicot739001303 (2)gb|AGV75878.1|1e-84U3 small nucleolar ribonucleoprotein [Nicotiana benthamiana]
JMSF031A02Sequence638013423 (2)ref|XP_006344411.1|2e-29PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10-like isoform X2 [722001303 (2)gb|AGV75878.1|8e-82U3 small nucleolar ribonucleoprotein [Nicotiana benthamiana]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF031A02+ CATCCTCATCAAAATCATTCAAGTCGGCATCGTCAATA
                      ____________________________________________________________
consensus CATCCTCATCAAAATCATTCAAGTCGGCATCGTCAATA
 
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JMSF031A02+ TCATATCCTTCTTTGTCTAACACTTCCAGTAGCCCACTCTTTTTCTCCAACCCATTTGGT
                      ____________________________________________________________
consensus TCATATCCTTCTTTGTCTAACACTTCCAGTAGCCCACTCTTTTTCTCCAACCCATTTGGT
 
. : . : . : . : . : . :
JMSF011D10+ GCGT
JMSF031A02+ TCCACATTGAACTGTTCTGATATACTTTCCAAATTCTTCTCGAAGTGACTAACTCGGCGT
                      ____________________________________________________________
consensus TCCACATTGAACTGTTCTGATATACTTTCCAAATTCTTCTCGAAGTGACTAACTCGGCGT
 
. : . : . : . : . : . :
JMSF011D10+ CGGAGAGCGGAAAGTAAAGGCTCCGATTGGATGTCAATTTGCTGCCATATCTGCTCTGCA
JMSF031A02+ CGGAGAGCGGAAAGTAAAGGCTCCGATTGGATGTCAATTTGCTGCCATATCTGCTCTGCA
                      ____________________________________________________________
consensus CGGAGAGCGGAAAGTAAAGGCTCCGATTGGATGTCAATTTGCTGCCATATCTGCTCTGCA
 
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JMSF011D10+ TCGAGCCCGTCGGTTAGAAGTTGCTCAAAAGGAGACTTCGGGGTGAAGGGTTTGAGGGAA
JMSF031A02+ TCGAACCCGTCGGTTAGAAGTTGCTCAAAAGGAGACTTCGGGGTGAAGGGTTTGAGGGAA
                      ____________________________________________________________
consensus TCGAGCCCGTCGGTTAGAAGTTGCTCAAAAGGAGACTTCGGGGTGAAGGGTTTGAGGGAA
 
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JMSF011D10+ GAGTAGAGATATTTGCAAGCTAATCGTGCGGCCGCCGAAAGTTCCGACGACGGTGAAAGG
JMSF031A02+ GAGTAGAGATATTTGCAAGCTAATCGTGCGGCCGCCGAAAGTTCCGACGACGGTGAAAGG
                      ____________________________________________________________
consensus GAGTAGAGATATTTGCAAGCTAATCGTGCGGCCGCCGAAAGTTCCGACGACGGTGAAAGG
 
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JMSF011D10+ TAGAGTGGTGGCTCTGATGATTTCAGCCAGCGAAGCGCCACCTCTCCGTCGTTCTCCATG
JMSF031A02+ TAGAGTGGTGGCTCTGATGATTTCAGCCAGCGAAGCGCCACCTCTCCGTCGTTCTCCATG
                      ____________________________________________________________
consensus TAGAGTGGTGGCTCTGATGATTTCAGCCAGCGAAGCGCCACCTCTCCGTCGTTCTCCATG
 
. : . : . : . : . : . :
JMSF011D10+ TGGGCGATACCT
JMSF031A02+ TGGGCGATACCTTCAGTGAGTTCAGTCGAGTTGTAGTCGTTGAGTCCTGTACGGTCGCCG
                      ____________________________________________________________
consensus TGGGCGATACCTTCAGTGAGTTCAGTCGAGTTGTAGTCGTTGAGTCCTGTACGGTCGCCG
 
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JMSF031A02+ GTGAGAGACGACTGACGAGAGACCAGGTCTGACTGTCTGAGTTGTCCGGAGCAGAGAGGG
                      ____________________________________________________________
consensus GTGAGAGACGACTGACGAGAGACCAGGTCTGACTGTCTGAGTTGTCCGGAGCAGAGAGGG
 
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JMSF031A02+ AGACGGCGACGGAGCACTGGCCGTCTTGGTCACTGGTCACTCAGACGGCGAGCACTCCAG
                      ____________________________________________________________
consensus AGACGGCGACGGAGCACTGGCCGTCTTGGTCACTGGTCACTCAGACGGCGAGCACTCCAG
 
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JMSF031A02+ AGTCGTCCGGCGAGCTCTCCAGAGTCGTTGGCAAATGGCGAGGGCAGACACGATCTGACC
                      ____________________________________________________________
consensus AGTCGTCCGGCGAGCTCTCCAGAGTCGTTGGCAAATGGCGAGGGCAGACACGATCTGACC