Contig 013423:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011D10Sequence268013423 (2)ref|XP_009595975.1|7e-23PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X2 [Nicot739001303 (2)gb|AGV75878.1|1e-84U3 small nucleolar ribonucleoprotein [Nicotiana benthamiana]
JMSF031A02Sequence638013423 (2)ref|XP_006344411.1|2e-29PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10-like isoform X2 [722001303 (2)gb|AGV75878.1|8e-82U3 small nucleolar ribonucleoprotein [Nicotiana benthamiana]

Alignment

This contig is upended


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JMSF031A02+                                 CATCCTCATCAAAATCATTCAAGTCGGCATCGTCAATA
                      ____________________________________________________________
consensus                                   CATCCTCATCAAAATCATTCAAGTCGGCATCGTCAATA
 
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JMSF031A02+           TCATATCCTTCTTTGTCTAACACTTCCAGTAGCCCACTCTTTTTCTCCAACCCATTTGGT
                      ____________________________________________________________
consensus             TCATATCCTTCTTTGTCTAACACTTCCAGTAGCCCACTCTTTTTCTCCAACCCATTTGGT
 
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JMSF011D10+                                                                   GCGT
JMSF031A02+           TCCACATTGAACTGTTCTGATATACTTTCCAAATTCTTCTCGAAGTGACTAACTCGGCGT
                      ____________________________________________________________
consensus             TCCACATTGAACTGTTCTGATATACTTTCCAAATTCTTCTCGAAGTGACTAACTCGGCGT
 
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JMSF011D10+           CGGAGAGCGGAAAGTAAAGGCTCCGATTGGATGTCAATTTGCTGCCATATCTGCTCTGCA
JMSF031A02+           CGGAGAGCGGAAAGTAAAGGCTCCGATTGGATGTCAATTTGCTGCCATATCTGCTCTGCA
                      ____________________________________________________________
consensus             CGGAGAGCGGAAAGTAAAGGCTCCGATTGGATGTCAATTTGCTGCCATATCTGCTCTGCA
 
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JMSF011D10+           TCGAGCCCGTCGGTTAGAAGTTGCTCAAAAGGAGACTTCGGGGTGAAGGGTTTGAGGGAA
JMSF031A02+           TCGAACCCGTCGGTTAGAAGTTGCTCAAAAGGAGACTTCGGGGTGAAGGGTTTGAGGGAA
                      ____________________________________________________________
consensus             TCGAGCCCGTCGGTTAGAAGTTGCTCAAAAGGAGACTTCGGGGTGAAGGGTTTGAGGGAA
 
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JMSF011D10+           GAGTAGAGATATTTGCAAGCTAATCGTGCGGCCGCCGAAAGTTCCGACGACGGTGAAAGG
JMSF031A02+           GAGTAGAGATATTTGCAAGCTAATCGTGCGGCCGCCGAAAGTTCCGACGACGGTGAAAGG
                      ____________________________________________________________
consensus             GAGTAGAGATATTTGCAAGCTAATCGTGCGGCCGCCGAAAGTTCCGACGACGGTGAAAGG
 
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JMSF011D10+           TAGAGTGGTGGCTCTGATGATTTCAGCCAGCGAAGCGCCACCTCTCCGTCGTTCTCCATG
JMSF031A02+           TAGAGTGGTGGCTCTGATGATTTCAGCCAGCGAAGCGCCACCTCTCCGTCGTTCTCCATG
                      ____________________________________________________________
consensus             TAGAGTGGTGGCTCTGATGATTTCAGCCAGCGAAGCGCCACCTCTCCGTCGTTCTCCATG
 
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JMSF011D10+           TGGGCGATACCT                                                
JMSF031A02+           TGGGCGATACCTTCAGTGAGTTCAGTCGAGTTGTAGTCGTTGAGTCCTGTACGGTCGCCG
                      ____________________________________________________________
consensus             TGGGCGATACCTTCAGTGAGTTCAGTCGAGTTGTAGTCGTTGAGTCCTGTACGGTCGCCG
 
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JMSF031A02+           GTGAGAGACGACTGACGAGAGACCAGGTCTGACTGTCTGAGTTGTCCGGAGCAGAGAGGG
                      ____________________________________________________________
consensus             GTGAGAGACGACTGACGAGAGACCAGGTCTGACTGTCTGAGTTGTCCGGAGCAGAGAGGG
 
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JMSF031A02+           AGACGGCGACGGAGCACTGGCCGTCTTGGTCACTGGTCACTCAGACGGCGAGCACTCCAG
                      ____________________________________________________________
consensus             AGACGGCGACGGAGCACTGGCCGTCTTGGTCACTGGTCACTCAGACGGCGAGCACTCCAG
 
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JMSF031A02+           AGTCGTCCGGCGAGCTCTCCAGAGTCGTTGGCAAATGGCGAGGGCAGACACGATCTGACC
                      ____________________________________________________________
consensus             AGTCGTCCGGCGAGCTCTCCAGAGTCGTTGGCAAATGGCGAGGGCAGACACGATCTGACC