Contig 013420:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012J20Sequence357013420 (4)708002794 (7)emb|CBI17647.3|7e-58unnamed protein product [Vitis vinifera]
JMSF030O05Sequence697013420 (4)ref|XP_009793876.1|3e-50PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Nicotiana sylve728002794 (7)emb|CBI17647.3|2e-63unnamed protein product [Vitis vinifera]
JMSF038H07Sequence706013420 (4)ref|XP_009611380.1|1e-101PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 [Nico905002794 (7)ref|XP_009611380.1|5e-95PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 [Nico
JMSF042A15Sequence760013420 (4)ref|XP_009611380.1|2e-110PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 [Nico653002794 (7)emb|CBI17647.3|2e-50unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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JMSF042A15+                    TAGCTGACCAGGAGTAGTTGGAGAATGGACGGGAGGATAAGCAGGAGAACC
                      ____________________________________________________________
consensus                      TAGCTGACCAGGAGTAGTTGGAGAATGGACGGGAGGATAAGCAGGAGAACC
 
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JMSF038H07+           ACGTAGAGGGACCATCATATTAGATGGTTGAGGATGGTGAAATTTACAAGTGCTCCCAAA
JMSF042A15+           ACGTAGAGGGACCATCATATTAGATGGTTGAGGATGGTGAAATTTACAAGTGCTCCCAAA
                      ____________________________________________________________
consensus             ACGTAGAGGGACCATCATATTAGATGGTTGAGGATGGTGAAATTTACAAGTGCTCCCAAA
 
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JMSF038H07+           CTTGCATTGTCCAGTTCTCATATAATAGGGGCATTCAATGTCATTCGGGCGAAGTGGATA
JMSF042A15+           CTTGCATTGTCCAGTTCTCATATAATAGGGGCATTCAATGTCATTCGGCCGAAGTGGATA
                      ____________________________________________________________
consensus             CTTGCATTGTCCAGTTCTCATATAATAGGGGCATTCAATGTCATTCGGGCGAAGTGGATA
 
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JMSF038H07+           GCCCAAGACATTTAGAGCAACTCTTCCAGCAATCCCAGCCTTATCTCTAGGATGGTGAAA
JMSF042A15+           GCCCAAGACATTTAGAGCAACTCTTCCAGCAATCCCAGCCTTATCTCTAGGATGGTGAAA
                      ____________________________________________________________
consensus             GCCCAAGACATTTAGAGCAACTCTTCCAGCAATCCCAGCCTTATCTCTAGGATGGTGAAA
 
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JMSF038H07+           CTTGCAGGTGGCCCCAAACTTGCAAGCTCCCGTCTTCAAGTAGTACTGGCATTCTGGCTG
JMSF042A15+           CTTGCAGGTGGCCCCAAACTTGCAAGCTCCCGTCTTCAAGTAGTACTGGCATTCTGGCTG
                      ____________________________________________________________
consensus             CTTGCAGGTGGCCCCAAACTTGCAAGCTCCCGTCTTCAAGTAGTACTGGCATTCTGGCTG
 
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JMSF038H07+           CCCTACTCGTTCTGGATACTCACCTTTCATCCTTGCCGCAGCAATTGCCAGTTTCCTGTT
JMSF042A15+           CCCTACTCGTTCTGGATACTCACCTTTCATCCTTGCCGCAGCAATTGCCAGTTTCCTGTT
JMSF030O05+                                  CTTTCATCCTTGCCGCAGCAATTGCCAGTTTCCTGTT
                      ____________________________________________________________
consensus             CCCTACTCGTTCTGGATACTCACCTTTCATCCTTGCCGCAGCAATTGCCAGTTTCCTGTT
 
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JMSF038H07+           AGATGGATGGTTAAATCGACAAGATGCTCCAAATCTACAAAGACCAGTTCTGATGTAGTA
JMSF042A15+           AGATGGATGGTTAAATCGACAAGATGCTCCAAATCTACAAAGACCAGTTNTGATGTAGTA
JMSF030O05+           AGATGGATGGTTAAATCGACAAGATGCTCCAAATCTACAAAGACCAGTTCTGATGTAGTA
                      ____________________________________________________________
consensus             AGATGGATGGTTAAATCGACAAGATGCTCCAAATCTACAAAGACCAGTTCTGATGTAGTA
 
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JMSF038H07+           AGAACAATCTGGTTCACCATCACGTACTGGATATGTCCCAGACTCCATTGTCTCCATTGA
JMSF042A15+           AGAACAATCTGGTTCACCATCACGTACTGGATATGTCCCAGACTCCATTGTCTCCATTGA
JMSF030O05+           AGAACAATCTGGTTCACCATCACGTACTGGATATGTCCCAGACTCCATTGTCTCCATTGA
                      ____________________________________________________________
consensus             AGAACAATCTGGTTCACCATCACGTACTGGATATGTCCCAGACTCCATTGTCTCCATTGA
 
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JMSF038H07+           TCTCAAACTCAGTTGCCACAGTGTTTCTTGGGCGAGGGGCGGAGACAGAGAGGAAGGACC
JMSF042A15+           TCTCAAACTCAGTTGCCACAGTGTTTCTTGGGCGAGGGGCGGAGACAGAGAGGAAGGACC
JMSF030O05+           TCTCAAACTCAGTTGCCACAGTGTTTCTTGGGCGAGGGGCGGAGACAGAGAGGAAGGACC
                      ____________________________________________________________
consensus             TCTCAAACTCAGTTGCCACAGTGTTTCTTGGGCGAGGGGCGGAGACAGAGAGGAAGGACC
 
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JMSF038H07+           TTCGGTGACGGAGGCCATGGAAGCAGAAATTCCGGCGGCGGCTTCAAAATCCATCATGTG
JMSF042A15+           TTCGGTGACGGAGGCCATGGAAGCAGAAATTCCGGCGGCGGCTTCAAAATCCATCATGTG
JMSF012J20+                     GAGGCCATGGAAGCAGAAATTCCGGCGGCGGCTTCAAAATCCATCATGTG
JMSF030O05+           TTCGGTGACGGAGGCCATGGAAGCAGAAATTCCGGCGGCGGCTTCAAAATCCATCATGTG
                      ____________________________________________________________
consensus             TTCGGTGACGGAGGCCATGGAAGCAGAAATTCCGGCGGCGGCTTCAAAATCCATCATGTG
 
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JMSF038H07+           GAAGAAGAAGAAGAAGAAGAAGGAGACGATGATGATGATGCGGAGGAGGAGGAGGAGGAT
JMSF042A15+           GAAGAAGAAGAAGAAGAAGAAGGAGACGATGATGATGATGCGGAGGAGGAGGAGGAGGAT
JMSF012J20+           GAAGAAGAAGAAGAAGAAGAAGGAGACGATGATGATGATGCGGAGGAGGAGGAGGAGGAT
JMSF030O05+           GAAGAAGAAGAAGAAGAAGAAGGAGACGATGATGATGATGCGGAGGAGGAGGAGGAGGAT
                      ____________________________________________________________
consensus             GAAGAAGAAGAAGAAGAAGAAGGAGACGATGATGATGATGCGGAGGAGGAGGAGGAGGAT
 
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JMSF038H07+           GAGAGTGCGGTGGTGCTTCTTCCATCAGCAGCAGCACCGCCGTCCCTCCAGAATTCCCAT
JMSF042A15+           GAGAGTGCGGTGGTGCTTNTTCCATCAGCAGCAGCACCGCCGTCCCTCCAGAATTCCCAT
JMSF012J20+           GAGAGTGCGGTGGTGCTTCTTCCATCAGCAGCAGCACCGCCGTCCCTCCAGAATTCCCAT
JMSF030O05+           GAGAGTGCGGTGGTGCTTCTTCCATCAGCAGCAGCACCGCCGTCCCTCCAGAATTCCCAT
                      ____________________________________________________________
consensus             GAGAGTGCGGTGGTGCTTCTTCCATCAGCAGCAGCACCGCCGTCCCTCCAGAATTCCCAT
 
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JMSF038H07+           TGATTCCGAGAGACCAAAGGCCCGCTGTTGCCCTTCCCAACCCCC               
JMSF042A15+           TGATTCCAAGAGACCAAAGGCCCGCTGTTGCCCTTCCCAACCCCC               
JMSF012J20+           TGATTCCGAGAGACCAAAGGCCCGCTGTTGCCCTTCCCAACCCCCGATCAAAAATGCGGC
JMSF030O05+           TGATTCCGAGAGACCAAAGGCCCGCTGTTGCCCTTCCCAACCCCCGATCAAAAATGCGGC
                      ____________________________________________________________
consensus             TGATTCCGAGAGACCAAAGGCCCGCTGTTGCCCTTCCCAACCCCCGATCAAAAATGCGGC
 
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JMSF012J20+           AGCAGCTCGGGAGAGGGATAAAAATAATGAACCGAAATGAAATTATTATTTTTATTAAAA
JMSF030O05+           AGCAGCTCGGGAGAGGGATAAAAATAATGAACCGAAATGAAATTATTATTTTTATTAAAA
                      ____________________________________________________________
consensus             AGCAGCTCGGGAGAGGGATAAAAATAATGAACCGAAATGAAATTATTATTTTTATTAAAA
 
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JMSF012J20+           AAAATTAAAATCGGAGTGGAAGAAAAGTAGCGTTCTCTCTTCTCCACACAAATAACAGAG
JMSF030O05+           AAAATTAAAATCGGAGTGGAAGAAAAGTAGCGTTCTCTCTTCTCCACACAAATAACAGAG
                      ____________________________________________________________
consensus             AAAATTAAAATCGGAGTGGAAGAAAAGTAGCGTTCTCTCTTCTCCACACAAATAACAGAG
 
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JMSF012J20+           GGAGAG                                                      
JMSF030O05+           GGAGAGAGAGAGATAGGAAGAGAGAGAAGGAGAGAAAAAGGAGCGAATAAAAGCCGCCCC
                      ____________________________________________________________
consensus             GGAGAGAGAGAGATAGGAAGAGAGAGAAGGAGAGAAAAAGGAGCGAATAAAAGCCGCCCC