Contig 013419:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012I18Sequence514013419 (2)ref|XP_009591396.1|3e-25PREDICTED: transcription factor PIF1-like [Nicotiana tomentosiformis]779005637 (2)ref|XP_004247109.1|3e-21PREDICTED: transcription factor PIF1-like [Solanum lycopersicum]
JMSF030K15Sequence663013419 (2)ref|XP_009591396.1|2e-45PREDICTED: transcription factor PIF1-like [Nicotiana tomentosiformis]784005637 (2)ref|XP_004247109.1|3e-21PREDICTED: transcription factor PIF1-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF030K15+                                                                    GCG
                      ____________________________________________________________
consensus                                                                      GCG
 
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JMSF030K15+           TAGACGGGAGCACACGAAGCTGGTGGATACAGCAAATCGGCATAGAGATCACGGTCAAAC
                      ____________________________________________________________
consensus             TAGACGGGAGCACACGAAGCTGGTGGATACAGCAAATCGGCATAGAGATCACGGTCAAAC
 
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JMSF030K15+           GAGGGCTCTTCGAGAGGGTAGTGAAGCCACGACGCCATCTCATCCTCCTGCATGAACACA
                      ____________________________________________________________
consensus             GAGGGCTCTTCGAGAGGGTAGTGAAGCCACGACGCCATCTCATCCTCCTGCATGAACACA
 
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JMSF012I18+                 TTCGCCGCCGTTTCTTCTCCCGCCGGTCGAATCTCCTTGGTGACAGGCTGCTCA
JMSF030K15+           TGCTGATTCGCCGCCGTTTCTTCTCCCGCCGGTCGAATCTCCTTGGTGACAGGCTGCTCA
                      ____________________________________________________________
consensus             TGCTGATTCGCCGCCGTTTCTTCTCCCGCCGGTCGAATCTCCTTGGTGACAGGCTGCTCA
 
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JMSF012I18+           GCCGGAATCGCGGCATCCCCGGAAAAGTGAGATTTATGAAAAGATCTGTGGTTTTGACTA
JMSF030K15+           GCCGGAATCGCGGCATCCCCGGAAAAGTGAGATTTATGAAAAGATCTGTGGTTTTGACTA
                      ____________________________________________________________
consensus             GCCGGAATCGCGGCATCCCCGGAAAAGTGAGATTTATGAAAAGATCTGTGGTTTTGACTA
 
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JMSF012I18+           TGCACAACAACTTGACCGTTCTGCCATAGCAGCTCCATGATATCCTCTTCACCCATTGCA
JMSF030K15+           TGCACAACAACTTGACCGTTCTGCCATAGCAGCTCCATGATATCCTCTTCACCCATTGCA
                      ____________________________________________________________
consensus             TGCACAACAACTTGACCGTTCTGCCATAGCAGCTCCATGATATCCTCTTCACCCATTGCA
 
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JMSF012I18+           GACTTCTTATGCCTGGTTAAACCAGAGGAAGAAGTAGCGGTGGGAGGAAGATTGAAGTCC
JMSF030K15+           GACTTCTTATGCCTGGTTAAACCAGAGGAAGAAGTAGCGGTGGGAGGAAGATTGAAGTCC
                      ____________________________________________________________
consensus             GACTTCTTATGCCTGGTTAAACCAGAGGAAGAAGTAGCGGTGGGAGGAAGATTGAAGTCC
 
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JMSF012I18+           TCATCCATGTCAAAATCCGGAACGCAGTGATTCATCCTCTCTGCAACTCTATAAAAAGCA
JMSF030K15+           TCATCCATGTCAAAATCCGGAACGCAGTGATTCATCCTCTCTGCAACTCTATAAAAAGCA
                      ____________________________________________________________
consensus             TCATCCATGTCAAAATCCGGAACGCAGTGATTCATCCTCTCTGCAACTCTATAAAAAGCA
 
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JMSF012I18+           ACTAAAAATCACTTCCTTTTGTTATTTAAAGCTAAAATTCATCATCACTTCCATCCGGAA
JMSF030K15+           ACTAAAAATCACTTCCTTTTGTTATTTAAAGCTAAAATTCATCATCACTTCCATCCGGAA
                      ____________________________________________________________
consensus             ACTAAAAATCACTTCCTTTTGTTATTTAAAGCTAAAATTCATCATCACTTCCATCCGGAA
 
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JMSF012I18+           AATCACGATTATGCTTCCCGAAGAACAACAGCTAGCTAGCTATCTAGCTACCCAGATTCA
JMSF030K15+           AATCACGATTATGCTTCCCGAAGAACAACAGCTAGCTAGCTATCTAGCTACCCAGATTCA
                      ____________________________________________________________
consensus             AATCACGATTATGCTTCCCGAAGAACAACAGCTAGCTAGCTATCTAGCTACCCAGATTCA
 
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JMSF012I18+           CCGGCCCGCAACAACCCACCGACGATTACAGCCATAGATAAGGAGGTTTTGTTGGGAGAG
JMSF030K15+           CCGGCCCGCAACAACCCACCGACGATTACAGCCATAGATAAGGAGGTTTTGTTGGGAGAG
                      ____________________________________________________________
consensus             CCGGCCCGCAACAACCCACCGACGATTACAGCCATAGATAAGGAGGTTTTGTTGGGAGAG
 
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JMSF012I18+           GAGGAGAGGGGGGTTGAGATTCAGAGTAGAATAGAGTA                      
JMSF030K15+           GAGGAGAGGGGGGTTGAGATTCAGAGTAGAATAGAGTATAAAATCTTCTAGCTTAGCTTC
                      ____________________________________________________________
consensus             GAGGAGAGGGGGGTTGAGATTCAGAGTAGAATAGAGTATAAAATCTTCTAGCTTAGCTTC