Contig 013417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034F03Sequence445013417 (5)dbj|BAJ86214.1|2e-18predicted protein [Hordeum vulgare subsp. vulgare]
JMSF030D07Sequence600013417 (5)ref|XP_009782186.1|3e-46PREDICTED: ethylene-responsive transcription factor TINY-like [Nicotiana sylves702013417 (5)ref|XP_011093630.1|2e-52PREDICTED: ethylene-responsive transcription factor TINY-like [Sesamum indicum]
JMSF030E23Sequence600013417 (5)ref|XP_009782186.1|2e-46PREDICTED: ethylene-responsive transcription factor TINY-like [Nicotiana sylves694013417 (5)ref|XP_011093630.1|2e-52PREDICTED: ethylene-responsive transcription factor TINY-like [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF030E23- AGCTCTCAAATGGC
rJMSF030D07- TAGCTCTCAAATGGC
                      ____________________________________________________________
consensus TAGCTCTCAAATGGC
 
. : . : . : . : . : . :
rJMSF030E23- CTGAAACTGTACTTTCAAACTCTGATATTTCGATATTTATTCCTCCGCCGCCGCCGCCGC
rJMSF030D07- CTGAAACTGTACTTTCAAACTCTGATATTTCGATATTTATTCCTCCGCCGCCGCCGCCGC
                      ____________________________________________________________
consensus CTGAAACTGTACTTTCAAACTCTGATATTTCGATATTTATTCCTCCGCCGCCGCCGCCGC
 
. : . : . : . : . : . :
rJMSF030E23- CGTAATGTCCATAGTCGTCTTCCAAGCTATGCCACCATGGGTGGAAGTAATCCCAAACTT
rJMSF030D07- CGTAATGTCCATAGTCGTCTTCCAAGCTATGCCACCATGGGTGGAAGTAATCCCAAACTT
                      ____________________________________________________________
consensus CGTAATGTCCATAGTCGTCTTCCAAGCTATGCCACCATGGGTGGAAGTAATCCCAAACTT
 
. : . : . : . : . : . :
rJMSF030E23- CCGAGTCAATAAACAGAAACTCGTCCCGAGTTGACTCGACCAAATCGTAACTCGGGTCTG
rJMSF030D07- CCGAGTCAATAAACAGAAACTCGTCCCGAGTTGACTCGACCAAATCGTAACTCGGGTCTG
                      ____________________________________________________________
consensus CCGAGTCAATAAACAGAAACTCGTCCCGAGTTGACTCGACCAAATCGTAACTCGGGTCTG
 
. : . : . : . : . : . :
rJMSF030E23- GCAGCTTCGGCAGCTCCACTATCTCTCCCAGCTGCTCCTCCTGGCTCGACGGCGCCTCCG
rJMSF030D07- GCAGCTTCGGCAGCTCCACTATCTCTCCCAGCTGCTCCTCCTGGCTCGACGGCGCCTCCG
                      ____________________________________________________________
consensus GCAGCTTCGGCAGCTCCACTATCTCTCCCAGCTGCTCCTCCTGGCTCGACGGCGCCTCCG
 
. : . : . : . : . : . :
rJMSF030E23- CCGAGGAGGAGGAGGAGGAGCATGAGGCCGCCGACAATGACGGCTCGGGCGTTTCGGGCT
rJMSF030D07- CCGAGGAGGAGGAGGAGGAGCATGAGGCCGCCGACAATGACGGCTCGGGCGTTTCGGGCT
                      ____________________________________________________________
consensus CCGAGGAGGAGGAGGAGGAGCATGAGGCCGCCGACAATGACGGCTCGGGCGTTTCGGGCT
 
. : . : . : . : . : . :
rJMSF030E23- TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
rJMSF030D07- TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
JMSF030D07+ TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
JMSF030E23+ TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
                      ____________________________________________________________
consensus TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
 
. : . : . : . : . : . :
rJMSF030E23- GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCGGAAAGTTCGGGGAAGTTAAGGACGG
rJMSF030D07- GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCGGAAAGTTCGGGGAAGTTAAGGACGG
JMSF030D07+ GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCNGAAAGTTCGGGGAAGTTAAGGACGG
JMSF030E23+ GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCGGAAAGTTCGGGGAAGTTAAGGACGG
                      ____________________________________________________________
consensus GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCGGAAAGTTCGGGGAAGTTAAGGACGG
 
. : . : . : . : . : . :
rJMSF030E23- CGGATTTTCCCTTCACCGACAGCGCGGCGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
rJMSF030D07- CGGATTTTCCCTTCACCGACAGCGCGGCGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
JMSF030D07+ CGGATTTTCCCTTCACCGACAGCGCGGNGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
JMFF034F03+ GTGGGCCCTAGCGGCCATCTCAGCGC
JMSF030E23+ CGGATTTTCCCTTCACCGACAGCGCGGNGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
                      ____________________________________________________________
consensus CGGATTTTCCCTTCACCGACAGCGCGGCGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
 
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rJMSF030E23- TGGCGAAAGTGCCCAGCCAGATCCGAGACTTCTTCTTCGGCTCCCGAATTTCCGATACCC
rJMSF030D07- TGGCGAAAGTGCCCAGCCAGATCCGAGACTTCTTCTTCGGCTCCCGAATTTCCGATACCC
JMSF030D07+ TGGCGAAAGTGCCCANCCAGATCCGAGACTTNTTNTTCGGCTCCCGAATTTCCGATACCC
JMFF034F03+ TGGCGAAAGTGCCCANCCAGATCCGAGACTTCTTCTTCGGCTCCCGAATTTCCGATACCC
JMSF030E23+ TGGCGAAAGTGCCCANCCAGATCCGAGANTTCTTNTTCGGCTCCCGAATTTCCGATACCC
                      ____________________________________________________________
consensus TGGCGAAAGTGCCCAGCCAGATCCGAGACTTCTTCTTCGGCTCCCGAATTTCCGATACCC
 
. : . : . : . : . : . :
rJMSF030E23- ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTCGGATGCTTCAAATCACTCCGCC
rJMSF030D07- ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTCGGATGCTTCAAATCACTCCGCC
JMSF030D07+ ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTNGGATGCTTCAAATCACTCCGCC
JMFF034F03+ ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTNGGATGCTTCAAATCACTCCGCC
JMSF030E23+ ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTNGGATGCTTCAAATCACTCCGCC
                      ____________________________________________________________
consensus ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTCGGATGCTTCAAATCACTCCGCC
 
. : . : . : . : . : . :
rJMSF030E23- CTCTACTCCTCTTCCCGCCATTATCACCGCCGTCGCCGCCGTCCCCCCTCCCCCGCTTCT
rJMSF030D07- CTCTACTCCTCTTCCCGCCATTATCACCGCCGTCGCCGCCGTCCCCCCTCCCCCGCTTCT
JMSF030D07+ CTCTANTCCTCTTCCCGCCATTATCACCGCNGTNGCCGCCGTCCCCCCTCCCCCGCTTNT
JMFF034F03+ CTCTACTCCTCTTCCCGCCATTATCACCGCCGTCGCCGCCGTCCCCCCTCCCCCGCTTTT
JMSF030E23+ CTCTACTCCTCTTCCCGCCATTATCACCGCCGTNGCCGCCGTCCCCCCTCCCCCGCTTNT
                      ____________________________________________________________
consensus CTCTACTCCTCTTCCCGCCATTATCACCGCCGTCGCCGCCGTCCCCCCTCCCCCGCTTCT
 
. : . : . : . : . : . :
rJMSF030E23- TCAGCCGATCAGCGGCGCCG
rJMSF030D07- TCAGCCGATCAGCGGCGCCGGAAGAAG
JMSF030D07+ TCAGCCGATCAGCGGCGCCGGAAGAAGAAGACGGAGATAATGATGAGTAGCTACTTATTG
JMFF034F03+ TCANCCGATCAGCGGCGCCGGAAGAAGAAGACGGAGATAATGATGAGTAGCTACTTATTG
JMSF030E23+ TCAGCCGATCAGCGGCGCCGGAAGAAGAAGACGGAGATAATGATGAGTAGCTCCTTATTG
                      ____________________________________________________________
consensus TCAGCCGATCAGCGGCGCCGGAAGAAGAAGACGGAGATAATGATGAGTAGCTACTTATTG
 
. : . : . : . : . : . :
JMSF030D07+ ATTCCGTTTCCGAGTGCGATGATGATGACTCTGCCGCCATTACCGACACTCGATCAAGAT
JMFF034F03+ ATTCCGTTTCCGAGTGCGATGATGATGACTCTGCCGCCANTACCGACACTCGATCAAGAT
JMSF030E23+ ATTCCGTTTCCGAGTGCGATGATGATGACTCTGCCGCCATTACCGACACTCGATCAAGAT
                      ____________________________________________________________
consensus ATTCCGTTTCCGAGTGCGATGATGATGACTCTGCCGCCATTACCGACACTCGATCAAGAT
 
. : . : . : . : . : . :
JMSF030D07+ TTTNTCTTACACTGATATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAA
JMFF034F03+ TTTCTCTTACACTGATATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAA
JMSF030E23+ TTTCTCTTACACTGATATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAA
                      ____________________________________________________________
consensus TTTCTCTTACACTGATATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAA
 
. : . : . : . : . : . :
JMSF030D07+ CACAAACTAAGTAAGTGATGGATGAATAATAGAAGGGCGGGTGGTATAGTATG
JMFF034F03+ CACAAACTAAGTAAGTGATGGATGAATAATAGAAGGGCGGGTGGTATAGTATG
JMSF030E23+ CACAAACTAAGTAAGTGATGGATGAATAATAGAAGGGCGGGTGGTATAGTATGTAGTTCC
                      ____________________________________________________________
consensus CACAAACTAAGTAAGTGATGGATGAATAATAGAAGGGCGGGTGGTATAGTATGTAGTTCC