Contig 013417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034F03Sequence445013417 (5)dbj|BAJ86214.1|2e-18predicted protein [Hordeum vulgare subsp. vulgare]
JMSF030D07Sequence600013417 (5)ref|XP_009782186.1|3e-46PREDICTED: ethylene-responsive transcription factor TINY-like [Nicotiana sylves702013417 (5)ref|XP_011093630.1|2e-52PREDICTED: ethylene-responsive transcription factor TINY-like [Sesamum indicum]
JMSF030E23Sequence600013417 (5)ref|XP_009782186.1|2e-46PREDICTED: ethylene-responsive transcription factor TINY-like [Nicotiana sylves694013417 (5)ref|XP_011093630.1|2e-52PREDICTED: ethylene-responsive transcription factor TINY-like [Sesamum indicum]

Alignment

This contig is upended


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rJMSF030E23-                                                        AGCTCTCAAATGGC
rJMSF030D07-                                                       TAGCTCTCAAATGGC
                      ____________________________________________________________
consensus                                                          TAGCTCTCAAATGGC
 
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rJMSF030E23-          CTGAAACTGTACTTTCAAACTCTGATATTTCGATATTTATTCCTCCGCCGCCGCCGCCGC
rJMSF030D07-          CTGAAACTGTACTTTCAAACTCTGATATTTCGATATTTATTCCTCCGCCGCCGCCGCCGC
                      ____________________________________________________________
consensus             CTGAAACTGTACTTTCAAACTCTGATATTTCGATATTTATTCCTCCGCCGCCGCCGCCGC
 
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rJMSF030E23-          CGTAATGTCCATAGTCGTCTTCCAAGCTATGCCACCATGGGTGGAAGTAATCCCAAACTT
rJMSF030D07-          CGTAATGTCCATAGTCGTCTTCCAAGCTATGCCACCATGGGTGGAAGTAATCCCAAACTT
                      ____________________________________________________________
consensus             CGTAATGTCCATAGTCGTCTTCCAAGCTATGCCACCATGGGTGGAAGTAATCCCAAACTT
 
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rJMSF030E23-          CCGAGTCAATAAACAGAAACTCGTCCCGAGTTGACTCGACCAAATCGTAACTCGGGTCTG
rJMSF030D07-          CCGAGTCAATAAACAGAAACTCGTCCCGAGTTGACTCGACCAAATCGTAACTCGGGTCTG
                      ____________________________________________________________
consensus             CCGAGTCAATAAACAGAAACTCGTCCCGAGTTGACTCGACCAAATCGTAACTCGGGTCTG
 
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rJMSF030E23-          GCAGCTTCGGCAGCTCCACTATCTCTCCCAGCTGCTCCTCCTGGCTCGACGGCGCCTCCG
rJMSF030D07-          GCAGCTTCGGCAGCTCCACTATCTCTCCCAGCTGCTCCTCCTGGCTCGACGGCGCCTCCG
                      ____________________________________________________________
consensus             GCAGCTTCGGCAGCTCCACTATCTCTCCCAGCTGCTCCTCCTGGCTCGACGGCGCCTCCG
 
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rJMSF030E23-          CCGAGGAGGAGGAGGAGGAGCATGAGGCCGCCGACAATGACGGCTCGGGCGTTTCGGGCT
rJMSF030D07-          CCGAGGAGGAGGAGGAGGAGCATGAGGCCGCCGACAATGACGGCTCGGGCGTTTCGGGCT
                      ____________________________________________________________
consensus             CCGAGGAGGAGGAGGAGGAGCATGAGGCCGCCGACAATGACGGCTCGGGCGTTTCGGGCT
 
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rJMSF030E23-          TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
rJMSF030D07-          TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
JMSF030D07+           TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
JMSF030E23+           TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
                      ____________________________________________________________
consensus             TAGGCGGCGGGTCGAGATGGTCCATATGCGCGGCTCTCAACGCGGCGGCCTGGATGTCAC
 
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rJMSF030E23-          GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCGGAAAGTTCGGGGAAGTTAAGGACGG
rJMSF030D07-          GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCGGAAAGTTCGGGGAAGTTAAGGACGG
JMSF030D07+           GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCNGAAAGTTCGGGGAAGTTAAGGACGG
JMSF030E23+           GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCGGAAAGTTCGGGGAAGTTAAGGACGG
                      ____________________________________________________________
consensus             GCGGCGCGGAGGTGGCGGGGCGGGGCAAGAGGTCGGAAAGTTCGGGGAAGTTAAGGACGG
 
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rJMSF030E23-          CGGATTTTCCCTTCACCGACAGCGCGGCGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
rJMSF030D07-          CGGATTTTCCCTTCACCGACAGCGCGGCGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
JMSF030D07+           CGGATTTTCCCTTCACCGACAGCGCGGNGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
JMFF034F03+                                             GTGGGCCCTAGCGGCCATCTCAGCGC
JMSF030E23+           CGGATTTTCCCTTCACCGACAGCGCGGNGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
                      ____________________________________________________________
consensus             CGGATTTTCCCTTCACCGACAGCGCGGCGACGTCGTGGGCCCTAGCGGCCATCTCAGCGC
 
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rJMSF030E23-          TGGCGAAAGTGCCCAGCCAGATCCGAGACTTCTTCTTCGGCTCCCGAATTTCCGATACCC
rJMSF030D07-          TGGCGAAAGTGCCCAGCCAGATCCGAGACTTCTTCTTCGGCTCCCGAATTTCCGATACCC
JMSF030D07+           TGGCGAAAGTGCCCANCCAGATCCGAGACTTNTTNTTCGGCTCCCGAATTTCCGATACCC
JMFF034F03+           TGGCGAAAGTGCCCANCCAGATCCGAGACTTCTTCTTCGGCTCCCGAATTTCCGATACCC
JMSF030E23+           TGGCGAAAGTGCCCANCCAGATCCGAGANTTCTTNTTCGGCTCCCGAATTTCCGATACCC
                      ____________________________________________________________
consensus             TGGCGAAAGTGCCCAGCCAGATCCGAGACTTCTTCTTCGGCTCCCGAATTTCCGATACCC
 
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rJMSF030E23-          ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTCGGATGCTTCAAATCACTCCGCC
rJMSF030D07-          ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTCGGATGCTTCAAATCACTCCGCC
JMSF030D07+           ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTNGGATGCTTCAAATCACTCCGCC
JMFF034F03+           ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTNGGATGCTTCAAATCACTCCGCC
JMSF030E23+           ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTNGGATGCTTCAAATCACTCCGCC
                      ____________________________________________________________
consensus             ATTTCCCCCACGCCCGCATTCTCACCCCCACATACGTCGGATGCTTCAAATCACTCCGCC
 
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rJMSF030E23-          CTCTACTCCTCTTCCCGCCATTATCACCGCCGTCGCCGCCGTCCCCCCTCCCCCGCTTCT
rJMSF030D07-          CTCTACTCCTCTTCCCGCCATTATCACCGCCGTCGCCGCCGTCCCCCCTCCCCCGCTTCT
JMSF030D07+           CTCTANTCCTCTTCCCGCCATTATCACCGCNGTNGCCGCCGTCCCCCCTCCCCCGCTTNT
JMFF034F03+           CTCTACTCCTCTTCCCGCCATTATCACCGCCGTCGCCGCCGTCCCCCCTCCCCCGCTTTT
JMSF030E23+           CTCTACTCCTCTTCCCGCCATTATCACCGCCGTNGCCGCCGTCCCCCCTCCCCCGCTTNT
                      ____________________________________________________________
consensus             CTCTACTCCTCTTCCCGCCATTATCACCGCCGTCGCCGCCGTCCCCCCTCCCCCGCTTCT
 
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rJMSF030E23-          TCAGCCGATCAGCGGCGCCG                                        
rJMSF030D07-          TCAGCCGATCAGCGGCGCCGGAAGAAG                                 
JMSF030D07+           TCAGCCGATCAGCGGCGCCGGAAGAAGAAGACGGAGATAATGATGAGTAGCTACTTATTG
JMFF034F03+           TCANCCGATCAGCGGCGCCGGAAGAAGAAGACGGAGATAATGATGAGTAGCTACTTATTG
JMSF030E23+           TCAGCCGATCAGCGGCGCCGGAAGAAGAAGACGGAGATAATGATGAGTAGCTCCTTATTG
                      ____________________________________________________________
consensus             TCAGCCGATCAGCGGCGCCGGAAGAAGAAGACGGAGATAATGATGAGTAGCTACTTATTG
 
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JMSF030D07+           ATTCCGTTTCCGAGTGCGATGATGATGACTCTGCCGCCATTACCGACACTCGATCAAGAT
JMFF034F03+           ATTCCGTTTCCGAGTGCGATGATGATGACTCTGCCGCCANTACCGACACTCGATCAAGAT
JMSF030E23+           ATTCCGTTTCCGAGTGCGATGATGATGACTCTGCCGCCATTACCGACACTCGATCAAGAT
                      ____________________________________________________________
consensus             ATTCCGTTTCCGAGTGCGATGATGATGACTCTGCCGCCATTACCGACACTCGATCAAGAT
 
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JMSF030D07+           TTTNTCTTACACTGATATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAA
JMFF034F03+           TTTCTCTTACACTGATATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAA
JMSF030E23+           TTTCTCTTACACTGATATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAA
                      ____________________________________________________________
consensus             TTTCTCTTACACTGATATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAA
 
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JMSF030D07+           CACAAACTAAGTAAGTGATGGATGAATAATAGAAGGGCGGGTGGTATAGTATG       
JMFF034F03+           CACAAACTAAGTAAGTGATGGATGAATAATAGAAGGGCGGGTGGTATAGTATG       
JMSF030E23+           CACAAACTAAGTAAGTGATGGATGAATAATAGAAGGGCGGGTGGTATAGTATGTAGTTCC
                      ____________________________________________________________
consensus             CACAAACTAAGTAAGTGATGGATGAATAATAGAAGGGCGGGTGGTATAGTATGTAGTTCC