Contig 013416:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001G22Sequence566013416 (3)ref|XP_004250110.1|7e-88PREDICTED: ras-related protein Rab11D [Solanum lycopersicum]
JMSF030A14Sequence657013416 (3)ref|XP_004250110.1|1e-109PREDICTED: ras-related protein Rab11D [Solanum lycopersicum]732013416 (3)ref|XP_009802845.1|2e-82PREDICTED: ras-related protein Rab11D [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF030A14- AGGCACAGATCCACAATATGAAGACATACCACAAT
                      ____________________________________________________________
consensus AGGCACAGATCCACAATATGAAGACATACCACAAT
 
. : . : . : . : . : . :
rJMSF030A14- GTACTAACATAATACTTGCTAGAAAGACTGGTAGAAACCCAATATGGTCACCCCGTGTAA
                      ____________________________________________________________
consensus GTACTAACATAATACTTGCTAGAAAGACTGGTAGAAACCCAATATGGTCACCCCGTGTAA
 
. : . : . : . : . : . :
rJMSF030A14- CAACTAGTTTATCCACTCTTCAAGAACATGTAACCATTTCTCCCCCCTCCCAAAAAACAG
                      ____________________________________________________________
consensus CAACTAGTTTATCCACTCTTCAAGAACATGTAACCATTTCTCCCCCCTCCCAAAAAACAG
 
. : . : . : . : . : . :
rJMSF030A14- TAAAATGTAAAAAATTATAAGATATACAATCAAAATAAACCAGATATTAGAAGAATGGGT
                      ____________________________________________________________
consensus TAAAATGTAAAAAATTATAAGATATACAATCAAAATAAACCAGATATTAGAAGAATGGGT
 
. : . : . : . : . : . :
rJMSF030A14- ATCATCAGAATCTCACAGAACCTGCCGAACAAAAGAAGACGAATCATACAATCCCCTCAG
                      ____________________________________________________________
consensus ATCATCAGAATCTCACAGAACCTGCCGAACAAAAGAAGACGAATCATACAATCCCCTCAG
 
. : . : . : . : . : . :
rJMSF030A14- GAACTACAGCACATAGACTTCTTTTGTGGGATGACTTGCCCAGGACCAGGCACAAGAATC
                      ____________________________________________________________
consensus GAACTACAGCACATAGACTTCTTTTGTGGGATGACTTGCCCAGGACCAGGCACAAGAATC
 
. : . : . : . : . : . :
rJMSF030A14- TTCTTCCCGGTTAAAGATGCAGCGGCATTCCCATTCCCTTGATTCTCAGCAGCCGCCAGA
                      ____________________________________________________________
consensus TTCTTCCCGGTTAAAGATGCAGCGGCATTCCCATTCCCTTGATTCTCAGCAGCCGCCAGA
 
. : . : . : . : . : . :
rJMSF030A14- TTCTTCCTGTTCACAATGTTGAAGATCTCTGTTAGCACCGTGGTAAACGCTTCCTCCACG
                      ____________________________________________________________
consensus TTCTTCCTGTTCACAATGTTGAAGATCTCTGTTAGCACCGTGGTAAACGCTTCCTCCACG
 
. : . : . : . : . : . :
rJMSF030A14- TTTTTAGCTTCCATGGCAGACGTCTCCAAGAAGAACAACCCTTCCTTCTGAGCAAACTCT
JMSF030A14+ TTAGCTTCCATGGCAGACGTCTCCAAGAAGAACAACCCTTCCTTCTGAGCAAACTCT
                      ____________________________________________________________
consensus TTTTTAGCTTCCATGGCAGACGTCTCCAAGAAGAACAACCCTTCCTTCTGAGCAAACTCT
 
. : . : . : . : . : . :
rJMSF030A14- TTAGCATCCTCAGTTGGAACATCCCGCCGGTCTTCCAGATCAGTTTTGTTCCCAATTAGC
JMFF001G22+ TCCAGATCAGTTTTGTTCCCAATTAGC
JMSF030A14+ TTAGCATCCTCAGTTGGAACATCCCGCCGGTCTTCCAGATCAGTTTTGTTCCCAATTAGC
                      ____________________________________________________________
consensus TTAGCATCCTCAGTTGGAACATCCCGCCGGTCTTCCAGATCAGTTTTGTTCCCAATTAGC
 
. : . : . : . : . : . :
rJMSF030A14- ATTATCACTATGTTCTTATCAGCATGAGCACGCAGCTCTTCCAACCAACGAGGTATGTGA
JMFF001G22+ ATTATCACTATGTTCTTATCAGCATGAGCACGCAGCTCTTCCAACCAACGAGGTATGTGA
JMSF030A14+ ATTATCACTATGTTCTTATCAGCATGAGCACGCAGCTCTTCCAACCAACGAGGTATGTGA
                      ____________________________________________________________
consensus ATTATCACTATGTTCTTATCAGCATGAGCACGCAGCTCTTCCAACCAACGAGGTATGTGA
 
. : . : . : . : . : . :
rJMSF030A14- TCAAAGGTTTGGCGTTTCGTTATATCGTACACTAACATCGCACCCACAGCTCCCCTGTAG
JMFF001G22+ TCAAAGGTTTGGCGTTTCGTTATATCGTACACTAACATCGCACCCACAGCTCCCCTGTAG
JMSF030A14+ TCAAAGGTTTGGCGTTTCGTTATATCGTACACTAACATCGCACCCACAGCTCCCCTGTAG
                      ____________________________________________________________
consensus TCAAAGGTTTGGCGTTTCGTTATATCGTACACTAACATCGCACCCACAGCTCCCCTGTAG
 
. : . : . : . : . : . :
rJMSF030A14- TAGGCACTCGTAACAGCTCTATATCGTTCTTGGCCGG
JMFF001G22+ TAGGCACTCGTAACAGCTCTATATCGTTCTTGGCCGGCGGTGTCCCAGATCTGAGCTTTG
JMSF030A14+ TAGGCACTCGTAACAGCTCTATATCGTTCTTGGCCGGCGGTGTCCCAGATCTGAGCTTTG
                      ____________________________________________________________
consensus TAGGCACTCGTAACAGCTCTATATCGTTCTTGGCCGGCGGTGTCCCAGATCTGAGCTTTG
 
. : . : . : . : . : . :
JMFF001G22+ ACGGATTTGTGTTGGATGAGCATAGTCCGGGTTTGGAACTCCACCCCAATGGTAGCCTTT
JMSF030A14+ ACGGATTTGTGTTGGATGAGCATAGTCCGGGTTTGGAACTCCACCCCAATGGTAGCCTTT
                      ____________________________________________________________
consensus ACGGATTTGTGTTGGATGAGCATAGTCCGGGTTTGGAACTCCACCCCAATGGTAGCCTTT
 
. : . : . : . : . : . :
JMFF001G22+ GAATCGAGGCTGAACTCGTTCCGGGCAAACCGAGCCAGTATCTGAGACTTCCCCACCGCC
JMSF030A14+ GAATCGAGGCTGAACTCGTTCCGGGCAAACCGAGCCAGTATCTGAGACTTCCCCACCGCC
                      ____________________________________________________________
consensus GAATCGAGGCTGAACTCGTTCCGGGCAAACCGAGCCAGTATCTGAGACTTCCCCACCGCC
 
. : . : . : . : . : . :
JMFF001G22+ GAGTCTCCGATCAGCACCACCTTGAACACATAATCTATCTTCTGCCCCGCCGCATCACCA
JMSF030A14+ GAGTCTCCGATCAGCACCACCTTGAACACATAATCTATCTTCTGCCCCGCCGCATCACCA
                      ____________________________________________________________
consensus GAGTCTCCGATCAGCACCACCTTGAACACATAATCTATCTTCTGCCCCGCCGCATCACCA
 
. : . : . : . : . : . :
JMFF001G22+ TATCCTCCGCCACTCGCCATTCTTCTTTCTCTCTCTCTCTATATCTCTCTTCTCTTCCTC
JMSF030A14+ TATCCTCCGCCACTCGCCATTCTTCTTTCTCTCTCTCTCTATATCTCTCTTCTCTTCCTC
                      ____________________________________________________________
consensus TATCCTCCGCCACTCGCCATTCTTCTTTCTCTCTCTCTCTATATCTCTCTTCTCTTCCTC
 
. : . : . : . : . : . :
JMFF001G22+ TATATATCTCTCCCCTTTTGTAGAAGCGTAGATTAAGAGTAGCAGTAGCAGCGTAGGCGT
JMSF030A14+ TATATATCTCTCCCCTTTTGTAGAAGCGTAGATTAAGAGTAGCAGTAGCAGCGTAGGCGT
                      ____________________________________________________________
consensus TATATATCTCTCCCCTTTTGTAGAAGCGTAGATTAAGAGTAGCAGTAGCAGCGTAGGCGT
 
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JMFF001G22+ AGCTGAGGAGAGAAGAGTTGAAGAAACAGAGAAAGCCGTAGACGGTAGATCTTGACGAT
JMSF030A14+ AGCTGAGGAGAGAAGAGTTGAAGAAACAGAGAAAGCCGTAGACGGTAGATCTTGACGATG
                      ____________________________________________________________
consensus AGCTGAGGAGAGAAGAGTTGAAGAAACAGAGAAAGCCGTAGACGGTAGATCTTGACGATG