Contig 013414:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF029P01-                                                              AAATATTT
                      ____________________________________________________________
consensus                                                                 AAATATTT
 
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rJMSF029P01-          GCCATTTTCACCATTCTTGGTGAATCAACTGGGGGGAAGGATCAAGATTGGATTACAAGA
                      ____________________________________________________________
consensus             GCCATTTTCACCATTCTTGGTGAATCAACTGGGGGGAAGGATCAAGATTGGATTACAAGA
 
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rJMSF029P01-          CCTGAGAGTATTACTAGTAATACATAATCCACAAACACTAGACTCATTTGCATTAATATA
JMSF046E20+                                   TAATCCACAAACACTAGACTCATTTGCATTAATATA
                      ____________________________________________________________
consensus             CCTGAGAGTATTACTAGTAATACATAATCCACAAACACTAGACTCATTTGCATTAATATA
 
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rJMSF029P01-          AAGTCAAAACAGTGTTAGTGTTCACATACACTAAAAGCTTTGTGATTATTAGTAACAATG
JMSF046E20+           AAGTCAAAACAGTGTTAGTGTTCACATACACTAAAAGCTTTGTGATTATTAGTAACAATG
rJMSF046E20-                       GTTAGTGTTCACATACACTAAAAGCTTTGTGATTATTAGTAACAATG
                      ____________________________________________________________
consensus             AAGTCAAAACAGTGTTAGTGTTCACATACACTAAAAGCTTTGTGATTATTAGTAACAATG
 
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rJMSF029P01-          TGATCTCTGATTGCAAAATTGTGATGAGAGTATTTTGCAAAAACTAAATCAGAACTTCTT
JMSF046E20+           TGATCTCTGATTGCAAAATTGTGATGAGAGTATTTTGCAAAAACTAAATCAGAACTTCTT
rJMSF046E20-          TGATCTCTGATTGCAAAATTGTGATGAGAGTATTTTGCAAAAACTAAATCAGAACTTCTT
                      ____________________________________________________________
consensus             TGATCTCTGATTGCAAAATTGTGATGAGAGTATTTTGCAAAAACTAAATCAGAACTTCTT
 
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rJMSF029P01-          CTGCTCTTTGGTGTCCTCAGGAGGCAGTGACACAAACTGGACGATGCTTTGGACTTGAGA
JMSF046E20+           CTGCTCTTTGGTGTCCTCAGGAGGCAGTGACACAAACTGGACGATGCTTTGGACTTGAGA
rJMSF046E20-          CTGCTCTTTGGTGTCCTCAGGAGGCAGTGACACAAACTGGACGATGCTTTGGACTTGAGA
                      ____________________________________________________________
consensus             CTGCTCTTTGGTGTCCTCAGGAGGCAGTGACACAAACTGGACGATGCTTTGGACTTGAGA
 
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rJMSF029P01-          AACGTCGATTCGGAACTTGTTAGCTATTTGGTTGACATCCATAGGCCCTTCATGCTCATC
JMSF046E20+           AACGTCGATTCGGAACTTGTTAGCTATTTGGTTGACATCCATAGGCCCTTCATGCTCATC
rJMSF046E20-          AACGTCGATTCGGAACTTGTTAGCTATTTGGTTGACATCCATAGGCCCTTCATGCTCATC
                      ____________________________________________________________
consensus             AACGTCGATTCGGAACTTGTTAGCTATTTGGTTGACATCCATAGGCCCTTCATGCTCATC
 
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rJMSF029P01-          TGATTTGCCTTGATACAACACTATGATTTGTCGTAACTGCGCTACGTTTAAGGTTCCTGG
JMSF046E20+           TGATTTGCCTTGATACAACACTATGATTTGTCGTAACTGCGCTACGTTTAAGGTTCCTGG
rJMSF046E20-          TGATTTGCCTTGATACAACACTATGATTTGTCGTAACTGCGCTACGTTTAAGGTTCCTGG
                      ____________________________________________________________
consensus             TGATTTGCCTTGATACAACACTATGATTTGTCGTAACTGCGCTACGTTTAAGGTTCCTGG
 
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rJMSF029P01-          AGGCGCCGGCCTTCCCTCGTATCTGCTAGACTCTGTTGTTGTATTCCTTAGCTTTGGTAA
JMSF046E20+           AGGCGCCGGCCTTCCCTCGTATCTGCTAGACTTTGTTGTTGTATTCCTTAGCTTTGGTAA
rJMSF046E20-          AGGCGCCGGCCTTCCCTCGTATCTGCTAGACTTTGTTGTTGTATTCCTTAGCTTTGGTAA
JMSF029P01+                               ATCTGCTAGACTCTGTTGTTGTATTCCTTAGCTTTGGTAA
                      ____________________________________________________________
consensus             AGGCGCCGGCCTTCCCTCGTATCTGCTAGACTTTGTTGTTGTATTCCTTAGCTTTGGTAA
 
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rJMSF029P01-          AGGCCTATCATAGTTTTCCACAACCGATCCCTCACCCATTTCAAGTTTCCCTCCAGGCTT
JMSF046E20+           AGGCCTATCATAGTTTTCCACAACCGATCCCTCACCCATTTCAAGTTTCCCTCCAGGCTT
rJMSF046E20-          AGGCCTATCATAGTTTTCCACAACCGATCCCTCACCCATTTCAAGTTTCCCTCCAGGCTT
JMSF029P01+           AGGCCTATCATAGTTTTCCACAACCGATCCCTCACCCATTTCAAGTTTCCCTCCAGGCTT
                      ____________________________________________________________
consensus             AGGCCTATCATAGTTTTCCACAACCGATCCCTCACCCATTTCAAGTTTCCCTCCAGGCTT
 
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rJMSF029P01-          AGCACGGATTCTACCAACCATTTGACTAAGCATCACATCAAACTGTGGATCACGTTCTTC
JMSF046E20+           AGCACGGATTCTACCAACCATTTGACTAAGCATCACATCAAACTGTGGATCACGTTCTTC
rJMSF046E20-          AGCACGGATTCTACCAACCATTTGACTAAGCATCACATCAAACTGTGGATCACGTTCTTC
JMSF029P01+           AGCACGGATTCTACCAACCATTTGACTAAGCATCACATCAAACTGTGGATCACGTTCTTC
                      ____________________________________________________________
consensus             AGCACGGATTCTACCAACCATTTGACTAAGCATCACATCAAACTGTGGATCACGTTCTTC
 
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rJMSF029P01-          AAGGACACTTTTGGGATTAACTTTTGGAGTGCTCTCAGCTCCGGTGCCGACATTTTGGGC
JMSF046E20+           AAGGACACTTTTGGGATTAACTTTTGGAGTGCTCTCAGCTCCGGTGCCGACATTTTGGGC
rJMSF046E20-          AAGGACACTTTTGGGATTAACTTTTGGAGTGCTCTCAGCTCCGGTGCCGACATTTTGGGC
JMSF029P01+           AAGGACACTTTTGGGATTAACTTTTGGAGTGCTCTCAGCTCCGGTGCCGACATTTTGGGC
                      ____________________________________________________________
consensus             AAGGACACTTTTGGGATTAACTTTTGGAGTGCTCTCAGCTCCGGTGCCGACATTTTGGGC
 
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rJMSF029P01-          GGATATAATTTCCGGCGGCGGGGGTGGCGGTCTCTC-ATGGGCTTCTTCAGCTGCGACGA
JMSF046E20+           GGATATAATTTCCGGCGGCGGGGGTGGCGGTCTCTCAATGGGCTTCTTCAGCTGCGACGA
rJMSF046E20-          GGATATAATTTCCGGCGGCGGGGGTGGCGGTCTCTCAATGGGCTTCTTCAGCTGCGACGA
JMSF029P01+           GGATATAATTTCCGGCGGCGGGGGTGGCGGTCTCTCAATGGGCTTCTTCAGCTGCGACGA
                      ____________________________________________________________
consensus             GGATATAATTTCCGGCGGCGGGGGTGGCGGTCTCTCAATGGGCTTCTTCAGCTGCGACGA
 
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rJMSF029P01-          CGAAGTTTCCATTC                                              
JMSF046E20+           CGAAGTTTCCATTCCGGAGCTTCCGATCCTTCCAGCTGCTCGACGAAATGCCTGCCCC  
rJMSF046E20-          CGAAGTTTCCATTCCGGAGCTTCCGATCCTTCCAGCTGCTCGACGAAATGCCTGCCCC  
JMSF029P01+           CGAAGTTTCCATTCCGGAGCTTCCGATCCTTCCAGCTGCTCGACGAAATGCCTGCCCCAT
                      ____________________________________________________________
consensus             CGAAGTTTCCATTCCGGAGCTTCCGATCCTTCCAGCTGCTCGACGAAATGCCTGCCCCAT
 
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JMSF029P01+           CTGCTCCCTTTCTCTCTCTGTAATAATCTATATATTCCAATTCGTATGTATGCACTACTA
                      ____________________________________________________________
consensus             CTGCTCCCTTTCTCTCTCTGTAATAATCTATATATTCCAATTCGTATGTATGCACTACTA
 
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JMSF029P01+           TAATTATACTCCTAGCCTTGAATCTTAATGTTGCATTTTCTTCAATACCAAACGAAGATG
                      ____________________________________________________________
consensus             TAATTATACTCCTAGCCTTGAATCTTAATGTTGCATTTTCTTCAATACCAAACGAAGATG
 
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JMSF029P01+           GATTATTTTCTATTTCTGTGCTTTTTTTCAAAATTGTTTTTGCAGAAAATTAGTTGCGAA
                      ____________________________________________________________
consensus             GATTATTTTCTATTTCTGTGCTTTTTTTCAAAATTGTTTTTGCAGAAAATTAGTTGCGAA
 
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JMSF029P01+           AATCTCAAAGTGAAGAAGGTGCTTCAACAAAGAACGACAGATACAATACTTCTCCACGCC
                      ____________________________________________________________
consensus             AATCTCAAAGTGAAGAAGGTGCTTCAACAAAGAACGACAGATACAATACTTCTCCACGCC