Contig 013409:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037O05Sequence592013409 (4)gb|EEC74994.1|3e-85hypothetical protein OsI_11052 [Oryza sativa Indica Group]719013409 (4)ref|XP_002312053.2|6e-77hypothetical protein POPTR_0008s04660g [Populus trichocarpa] gb|EEE89420.2| hypo
JMSF029K10Sequence672013409 (4)ref|XP_010920978.1|6e-74PREDICTED: protein IN2-1 homolog B-like [Elaeis guineensis]747013409 (4)ref|XP_011077023.1|4e-57PREDICTED: protein IN2-1 homolog B-like [Sesamum indicum]

Alignment

This contig is upended


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rJMSF029K10-                    AATCTCAGATTTTCAGGACAGGGTCAAACAATCCATTACATTATTGAGAA
rJMFF037O05-                                                                  AGAA
                      ____________________________________________________________
consensus                       AATCTCAGATTTTCAGGACAGGGTCAAACAATCCATTACATTATTGAGAA
 
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rJMSF029K10-          ACCCAGTGGAACCAACTAGCCAAGTCATTTATACAA-ACACCTTATTCATAGTTTAACTC
rJMFF037O05-          ACCCAGNGGAACCAACTAGCCAAGTCATTTATACAANGCACCTTATTCATAGTTTAACTC
                      ____________________________________________________________
consensus             ACCCAGTGGAACCAACTAGCCAAGTCATTTATACAANGCACCTTATTCATAGTTTAACTC
 
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rJMSF029K10-          AATAAAAGTAGTTTAACAATGGCCATGGGAGCATGATTATTGATATTGTAGCAGCCATCT
rJMFF037O05-          AGTAAAAGTAGTTTAACAATGGCCATGGGAGCATGATTATTGATATTGTAGCAGCCATCT
                      ____________________________________________________________
consensus             AGTAAAAGTAGTTTAACAATGGCCATGGGAGCATGATTATTGATATTGTAGCAGCCATCT
 
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rJMSF029K10-          TTTAAAGAGTTCAGGGCTTAGCTGCAGCCTGAAATTTTTTCATAAAGCTTTCAACGTGCT
rJMFF037O05-          TTTAAAGAGTTCAGGGCTTANCTGCANCCTGAAATTTTTTCATAAAGCTTTCAACGTGCT
                      ____________________________________________________________
consensus             TTTAAAGAGTTCAGGGCTTAGCTGCAGCCTGAAATTTTTTCATAAAGCTTTCAACGTGCT
 
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rJMSF029K10-          CCTTGGGGTCGCGTTTTGTTACTTTGTAAGCATCAATCTTGTTCACCTCCTCGATCCAGT
rJMFF037O05-          CCTTGGGGTCGCGTTTTGTTACTTTGTAAGCATCAATCTTGTTCACCTCCTCNATCCAGT
JMSF029K10+                                                          TCCTCGATCCAGT
                      ____________________________________________________________
consensus             CCTTGGGGTCGCGTTTTGTTACTTTGTAAGCATCAATCTTGTTCACCTCCTCGATCCAGT
 
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rJMSF029K10-          GTGCAAGTTTCGGCCTGCCCTGTGTTATATCATAGTTCTTGAATTCATTGAAGAAAGTCT
rJMFF037O05-          GTGCAAGTTTCGGCCTGCCCTGTGTTATATCATAGTTCTTGAATTCATTGAAGAAAGTCT
JMSF029K10+           GTGCAAGTTTCGGCCTGCCCTGTGTTATATCATAGTTCTTGAATTCATTGAAGAAAGTCT
                      ____________________________________________________________
consensus             GTGCAAGTTTCGGCCTGCCCTGTGTTATATCATAGTTCTTGAATTCATTGAAGAAAGTCT
 
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rJMSF029K10-          GGAACCTCTCGATAAATGGTATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
rJMFF037O05-          GGAACCTCTCGATAAATGGNATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
JMFF037O05+                  CTCGATAAATGGTATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
JMSF029K10+           GGAACCTCTCGATAAATGGTATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
                      ____________________________________________________________
consensus             GGAACCTCTCGATAAATGGTATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
 
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rJMSF029K10-          AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
rJMFF037O05-          AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
JMFF037O05+           AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
JMSF029K10+           AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
                      ____________________________________________________________
consensus             AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
 
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rJMSF029K10-          CATCACTCATTCCTTCTGACCTCAAAGTACCAAACATAGTTTTGATAAAGGAGTCAGAGA
rJMFF037O05-          CATCACTCNTTCCTTCTGACCTCAAAGTACCANACATAGTTTTGATAAAGGAGTCANAGA
JMFF037O05+           CATCACTCATTCCTTCTGACCTCAAAGTACCAAACATAGTTTTGATAAAGGAGTCAGAGA
JMSF029K10+           CATCACTCATTCCTTCTGACCTCAAAGTACCAAACATAGTTTTGATAAAGGAGTCAGAGA
                      ____________________________________________________________
consensus             CATCACTCATTCCTTCTGACCTCAAAGTACCAAACATAGTTTTGATAAAGGAGTCAGAGA
 
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rJMSF029K10-          AGGACAGTAACTCATCTGC-AATGTTTTCTTAGCGGGATCATCAGGATAAAGTGAAGGCC
rJMFF037O05-          AGGACAGTAACTCATCTGCAAATGTTTTCTTANCGGGATCATCANGATAAAGTGAANGCC
JMFF037O05+           AGGACAGTAACTCATCTGCAAATGTTTTCTTAGCGGGATCATCAGGATAAAGTGAAGGCC
JMSF029K10+           AGGACAGTAACTCATCTGC-AATGTTTTCTTAGCGGGATCATCAGGATAAAGTGAAGGCC
                      ____________________________________________________________
consensus             AGGACAGTAACTCATCTGCAAATGTTTTCTTAGCGGGATCATCAGGATAAAGTGAAGGCC
 
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rJMSF029K10-          CTTCAAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
rJMFF037O05-          CTTCNAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
JMFF037O05+           CTTCAAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
JMSF029K10+           CTTCAAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
                      ____________________________________________________________
consensus             CTTCAAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
 
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rJMSF029K10-          TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
rJMFF037O05-          TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
JMFF037O05+           TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
JMSF029K10+           TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
                      ____________________________________________________________
consensus             TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
 
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rJMSF029K10-          TGTCATTCAACTCAATTGCANCCAATTTCACTTTATCCT                     
rJMFF037O05-          TGTCATTCAACTCAATTGCAACCAATTTCACTTTATCCTGCAATCCCTTATAATT     
JMFF037O05+           TGTCATTCAACTCAATTGCAACCAATTTCACTTTATCCTGCAATCCCTTATAATTTCGGG
JMSF029K10+           TGTCATTCAACTCAATTGCAACCAATTTCACTTTATCCTGCAATCCCTTATAATTTCGGG
                      ____________________________________________________________
consensus             TGTCATTCAACTCAATTGCAACCAATTTCACTTTATCCTGCAATCCCTTATAATTTCGGG
 
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JMFF037O05+           CAATCCAGGCACGTTGAGCATATGGGCATATGTATGCTATATACAGCTTGGGAGTTCCAT
JMSF029K10+           CAATCCAGGCACGTTGAGCATATGGGCATATGTATGCTATATACAGCTTGGGAGTTCCAT
                      ____________________________________________________________
consensus             CAATCCAGGCACGTTGAGCATATGGGCATATGTATGCTATATACAGCTTGGGAGTTCCAT
 
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JMFF037O05+           CAAAGATAGGTGGTGGTTCNGAAGAAGCACCAAGAGTAGGGGGAAGCACCTCANTGGTAG
JMSF029K10+           CAAAGATAGGTGGTGGTTCTGAAGAAGCACCAAGAGTAGGGGGAAGCACCTCACTGGTAG
                      ____________________________________________________________
consensus             CAAAGATAGGTGGTGGTTCTGAAGAAGCACCAAGAGTAGGGGGAAGCACCTCACTGGTAG
 
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JMFF037O05+           CCATTGTTGAAGCTGGTTNGGAATCNGGAGAGNGTCACCGGNGAAGNACTGAAGATGA  
JMSF029K10+           CCATTGTTGAAGCTGGTTTGGAATCTGGAGAGTGTCACCGGTGAAGAACTGAAGATGAGC
                      ____________________________________________________________
consensus             CCATTGTTGAAGCTGGTTTGGAATCTGGAGAGTGTCACCGGTGAAGAACTGAAGATGAGC