Contig 013408:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN007H23+                                           AGTCTTTCATATTAACCACCATAACCTT
rJMFF020L02-                                           GTCTTTCATATTAACCACCATAACCTT
                      ____________________________________________________________
consensus                                             AGTCTTTCATATTAACCACCATAACCTT
 
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JMFN007H23+           TTGTCAATCCACAGTTAATCATCACATGTAAGTTTATCCTCAAAACCAAACAAAGAATAT
rJMFF020L02-          TTGTCATTCCACAGTTAATCATCACATGTAAGTTTATCCTCAAAACCAAACAAAGAATAT
rJMSF029J13-                                     GTAAGTTTATCCTCAAAACCAAACAAAGAATAT
                      ____________________________________________________________
consensus             TTGTCATTCCACAGTTAATCATCACATGTAAGTTTATCCTCAAAACCAAACAAAGAATAT
 
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JMFN007H23+           CCCTATCCCTATCTCTATCCTACCAACAAAAAGCTTGATATTGAATGCAAAATATGAAAA
rJMFF020L02-          CCCTATCCCTATCCCTATCCTACCAACAAAAAGCTTGATATTGAATGCAAAATATGAAAA
rJMSF029J13-          CCCTATCCCTATCCCTATCCTACCAACAAAAAGCTTGATATTGAATGCAAAATATGAAAA
                      ____________________________________________________________
consensus             CCCTATCCCTATCCCTATCCTACCAACAAAAAGCTTGATATTGAATGCAAAATATGAAAA
 
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JMFN007H23+           GGCTGGATTCTACTTTCTGGAGCTAAAAGCTCCAAAATTGTGTATGATTATTGCACTCTC
rJMFF020L02-          GGCTGGATTCTACTTTCTGGAGCTAAAAGCTCCAAAATTGTGTATGATTATTGCACTCTC
rJMSF029J13-          GGCTGGATTCTACTTTCTGGAGCTAAAAGCTCCAAAATTGTGTATGATTATTGCACTCTC
                      ____________________________________________________________
consensus             GGCTGGATTCTACTTTCTGGAGCTAAAAGCTCCAAAATTGTGTATGATTATTGCACTCTC
 
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JMFN007H23+           TGGAGCAGCTTCTCCACCATAATCTTCTGCTGCACGGCGCTCAAAGACTCGGAATTCATG
rJMFF020L02-          TGGAGCAGCTTCTCCACCATAATCTTCTGCTGCACGGCGCTCAAAGACTCGGAATTCATG
rJMSF029J13-          TGGAGCAGCTTCTCCACCATAATCTTCTGCTGCACGGCGCTCAAAGACTCGGAATTCATG
                      ____________________________________________________________
consensus             TGGAGCAGCTTCTCCACCATAATCTTCTGCTGCACGGCGCTCAAAGACTCGGAATTCATG
 
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JMFN007H23+           ATAGCATTTGCGACAAGGATAGTTGTTGCAGGGGCGGGAACATTTACCCAATTACGCCCA
rJMFF020L02-          ATAGCATTTGCGACAAGGATAGTTGTTGCAGGGGCGGGAGCATTTACCCAATTACGCCCA
rJMSF029J13-          ATAGCATTTGCGACAAGGATAGTTGTTGCAGGGGCGGGAGCATTTACCCAATTACGCCCA
                      ____________________________________________________________
consensus             ATAGCATTTGCGACAAGGATAGTTGTTGCAGGGGCGGGAGCATTTACCCAATTACGCCCA
 
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JMFN007H23+           TTCAAACCAATTGCAATTTCAAAAGAGAGCTTCTTGCCAAGAGCTTCAAGAACAGGGCAT
rJMFF020L02-          TTCAAACCAATTGCAATTTCAAAAGAGAGCTTCTTGCCAAGAGCTTCAAGAACAGGGCAT
rJMSF029J13-          TTCAAACCAATTGCAATTTCAAAAGAGAGCTTCTTGCCAAGAGCTTCAAGAACAGGGCAT
                      ____________________________________________________________
consensus             TTCAAACCAATTGCAATTTCAAAAGAGAGCTTCTTGCCAAGAGCTTCAAGAACAGGGCAT
 
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JMFN007H23+           GTTGGGGAACTCAAAAGTATCCGTGATAAGCCTGTTGATGATTCAAACATGTAACCCTCT
rJMFF020L02-          GTCGGGGAACTCAAAAGTATCCGTGATAAGCCTGTTGATGATTCAAACATGTAACCCTCT
rJMSF029J13-          GTCGGGGAACTCAAAAGTATCCGTGATAAGCCTGTTGATGATTCAAACATGTAACCCTCT
                      ____________________________________________________________
consensus             GTCGGGGAACTCAAAAGTATCCGTGATAAGCCTGTTGATGATTCAAACATGTAACCCTCT
 
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JMFN007H23+           TTAAGGGGACCAAACTCAGAAGCCTTTCCTGAAGCATCCATGCATGACAGCTCAGGGTTC
rJMFF020L02-          TTAAGGGGACCAAACTCAGAAGCCTTTCCTGAAGCATCCATGCATGACAGCTCAGGGTTC
rJMSF029J13-          TTAAGGGGACCAAACTCAGAAGCCTTTCCTGAAGCATCCATGCATGACAGCTCAGGGTTC
                      ____________________________________________________________
consensus             TTAAGGGGACCAAACTCAGAAGCCTTTCCTGAAGCATCCATGCATGACAGCTCAGGGTTC
 
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JMFN007H23+           ATTCCAGTGTTGGCCTTGTCAACACGAGCATAAATCAGCGTTCCAGCCTCAAATTTTGGA
rJMFF020L02-          ATTCCAGTGTTGGCCTTGACAACACGAGCATAAATCAGCGTTCCAGCCTCAAATTTTGGA
rJMSF029J13-          ATTCCAGTGTTGGCCTTGACAACACGAGCATAAATCAGCGTTCCAGCCTCAAATTTTGGA
JMSF029J13+                                                                 TTTGGA
                      ____________________________________________________________
consensus             ATTCCAGTGTTGGCCTTGACAACACGAGCATAAATCAGCGTTCCAGCCTCAAATTTTGGA
 
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JMFN007H23+           ATGTTTCTTCTCGTTCC                                           
rJMFF020L02-          ATGTTTCTTCTCGTTCCTCCTTCAAATGCTAGAACGGGCAAAAATGCCAACATTGACCCT
rJMSF029J13-          ATGTTTCTTCTCGTTCCTCCTTCAAATGCTAGAACGGGCAAAAATGCCAACATTGACCCT
JMSF029J13+           ATGTTTCTTCTCGTTCCTCCTTCAAATGCTAGAACGGGCAAAAATGCCAACATTGACCCT
                      ____________________________________________________________
consensus             ATGTTTCTTCTCGTTCCTCCTTCAAATGCTAGAACGGGCAAAAATGCCAACATTGACCCT
 
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rJMFF020L02-          TTAATGTCTACAAGAAAGTTATCTGGTTTAGTGTCGACCACGATTCCAAGAACTGAATCT
rJMSF029J13-          TTAATGTCTACAAGAAAGTTATCTGGTTTAGTGTCGACCACGATTCCAAGAACTGAATCT
JMSF029J13+           TTAATGTCTACAAGAAAGTTATCTGGTTTAGTGTCGACCACGATTCCAAGAACTGAATCT
                      ____________________________________________________________
consensus             TTAATGTCTACAAGAAAGTTATCTGGTTTAGTGTCGACCACGATTCCAAGAACTGAATCT
 
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rJMFF020L02-          CCCGCACTAGGAACATATCTTTTTTGTGAGCTTTCAACCCAGTATTTATTTGGCTTTGTA
rJMSF029J13-          CCCGCACTAGGAACATATCTTTTTTGTGAGCTTTCAACCCAGTATTTATTTGGCTTTGTA
JMSF029J13+           CCCGCACTAGGAACATATCTTTTTTGTGAGCTTTCAACCCAGTATTTATTTGGCTTTGTA
                      ____________________________________________________________
consensus             CCCGCACTAGGAACATATCTTTTTTGTGAGCTTTCAACCCAGTATTTATTTGGCTTTGTA
 
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rJMFF020L02-          TATCTCAAAATCCCAGCTTTCATGACAGATACAGTATCACAATCCTGTCG          
rJMSF029J13-          TATCTCAAAATCCCAGCTTTCATGACAGATACAGTATCACAATCCTGTCG          
JMSF029J13+           TATCTCAAAATCCCAGCTTTCATGACAGATACAGTATCACAATCCTGTCGAAGGCCACCC
                      ____________________________________________________________
consensus             TATCTCAAAATCCCAGCTTTCATGACAGATACAGTATCACAATCCTGTCGAAGGCCACCC
 
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JMSF029J13+           CCAAGCTTTATGGTTTCGTTAGCCAGTGAAGAAAGATCCAATATCACATCACCTGGGACT
                      ____________________________________________________________
consensus             CCAAGCTTTATGGTTTCGTTAGCCAGTGAAGAAAGATCCAATATCACATCACCTGGGACT
 
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JMSF029J13+           ACTGGTTGGTCGATGAAGCTTGAGAGAGTATTTGGTTGTTTAGCTTCCATTTTCATTTTT
                      ____________________________________________________________
consensus             ACTGGTTGGTCGATGAAGCTTGAGAGAGTATTTGGTTGTTTAGCTTCCATTTTCATTTTT
 
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JMSF029J13+           CATCAAGAAATGATAAACCCTAAATTTGTATTTGGGGGGTTTTTGGAGTACGCAAGGATT
                      ____________________________________________________________
consensus             CATCAAGAAATGATAAACCCTAAATTTGTATTTGGGGGGTTTTTGGAGTACGCAAGGATT
 
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JMSF029J13+           AGGTTTGGTTCTAAAATAGGTTGAGGTGCTAAGTGCTTAACTCAGAATCCAGTCGCTTGT
                      ____________________________________________________________
consensus             AGGTTTGGTTCTAAAATAGGTTGAGGTGCTAAGTGCTTAACTCAGAATCCAGTCGCTTGT
 
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JMSF029J13+           GCTAGCCACTGAGTGAGCCGTGAGCCTTCAGGTTTGAGGAGACTGTCGGCTGCTATTAGA
                      ____________________________________________________________
consensus             GCTAGCCACTGAGTGAGCCGTGAGCCTTCAGGTTTGAGGAGACTGTCGGCTGCTATTAGA
 
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JMSF029J13+           GTGACAAACTGAGAGGTCAGCCGGCTCGCCGCGCCGGAGAAGACTGCCGCCTGCTGGCTG
                      ____________________________________________________________
consensus             GTGACAAACTGAGAGGTCAGCCGGCTCGCCGCGCCGGAGAAGACTGCCGCCTGCTGGCTG
 
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JMSF029J13+           GCTGCGACGGCGTGGGAGACTGAGAGACGGAGAGGAGTTGACAGAAGACACTAATCGCCC
                      ____________________________________________________________
consensus             GCTGCGACGGCGTGGGAGACTGAGAGACGGAGAGGAGTTGACAGAAGACACTAATCGCCC