| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008N20 | Sequence | 328 | 013398 (6) | ref|XP_009620260.1| | 2e-47 | PREDICTED: splicing factor 3B subunit 4-like isoform X2 [Nicotiana tomentosifor | 767 | 013398 (6) | ref|XP_006356003.1| | 6e-85 | PREDICTED: splicing factor 3B subunit 4-like isoform X1 [Solanum tuberosum] |
| JMSF028F15 | Sequence | 675 | 013398 (6) | ref|XP_006356003.1| | 8e-80 | PREDICTED: splicing factor 3B subunit 4-like isoform X1 [Solanum tuberosum] | 770 | 013398 (6) | ref|XP_006356003.1| | 3e-64 | PREDICTED: splicing factor 3B subunit 4-like isoform X1 [Solanum tuberosum] |
| JMSF046A11 | Sequence | 678 | 013398 (6) | ref|XP_006356003.1| | 5e-84 | PREDICTED: splicing factor 3B subunit 4-like isoform X1 [Solanum tuberosum] | 641 | 013398 (6) | ref|XP_006356003.1| | 2e-48 | PREDICTED: splicing factor 3B subunit 4-like isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF046A11- ATACCATGGGNCAAACAATATTCTTCTAAGAGACTGAACAACAAAGCACAA
rJMSF028F15- CAAACAATATTCTTCTAAGAGACTGAACAACAAAGCACAA
____________________________________________________________
consensus ATACCATGGGNCAAACAATATTCTTCTAAGAGACTGAACAACAAAGCACAA
. : . : . : . : . : . :
rJMSF046A11- ACCAGACAACATATATGTTACAATATTAAAAGCAAGAAAAGCTAAATGCATGCCAGCTGA
rJMSF028F15- ACCAGACAACATATATGTTACAATATTAAAAGCAAGAAAAGCTAAATGCATGCCAGCTGA
rJMSF008N20- AAAGCTAAATGCATGCCAGCTGA
____________________________________________________________
consensus ACCAGACAACATATATGTTACAATATTAAAAGCAAGAAAAGCTAAATGCATGCCAGCTGA
. : . : . : . : . : . :
rJMSF046A11- TACTAC-GTTCCCCTTAATTCCACATCAATTACACTACTAGTACAGAATAAGTTAGAGCT
rJMSF028F15- TACTAC-GTTCCCCTTAATTCCACATCAATTACACTACTAGTACAGAATAAGTTAGAGCT
rJMSF008N20- TACTACGGTTCCCCTTAATTCCACATCAATTACACTACTAGTACAGAATAAGTTAGAGCT
____________________________________________________________
consensus TACTAC-GTTCCCCTTAATTCCACATCAATTACACTACTAGTACAGAATAAGTTAGAGCT
. : . : . : . : . : . :
rJMSF046A11- GCTCTCTATCAATTTTAAGGACAATTAGTAAGGGGAATAATAATTGTTTGAGTTACGACC
rJMSF028F15- GCTCTCTATCAATTTTAAGGACAATTAGTAAGGGGAATAATAATTGTTTGAGTTACGACC
rJMSF008N20- GCTCTCTATCAATTTTAAGGACAATTAGTAAGGGGAATAATAATTGTTTGAGTTACGACC
JMSF046A11+ AGGACAATTAGTAAGGGGAATAATAATTGTTTGAGTTACGACC
____________________________________________________________
consensus GCTCTCTATCAATTTTAAGGACAATTAGTAAGGGGAATAATAATTGTTTGAGTTACGACC
. : . : . : . : . : . :
rJMSF046A11- ATTATAACGGCCCGACCTAGAAGGGGTAATACTATCCAAAGCTGCCCCAAATACTCGTCG
rJMSF028F15- ATTATAACGGCCCGACCTAGAAGGGGTAATACTATCCAAAGCTGCCCCAAATACTCGTCG
rJMSF008N20- ATTATAACGGCCCGACCTAGAAGGGGTAATACTATCCAAAGCTGCCCCAAATACTCGTCG
JMSF046A11+ ATTATAACGGCCCGACCTAGAAGGGGTAATACTATCCAAAGCTGCCCCAAATACTCGTCG
JMSF028F15+ CCCCAAATACTCGTCG
____________________________________________________________
consensus ATTATAACGGCCCGACCTAGAAGGGGTAATACTATCCAAAGCTGCCCCAAATACTCGTCG
. : . : . : . : . : . :
rJMSF046A11- ACTGTTATCATATTTGTTGCCGTCATAATGTGATCTATAGCCATTACGCTGGTGTAATGG
rJMSF028F15- ACTGTTATCATATTTGTTGCCGTCATAATGTGATCTATAGCCATTACGCTGGTGTAATGG
rJMSF008N20- ACTGTTATCATATTTGTTGCCGTCATAATGTGATCTATAGCCATTACGCTGGTGTAATGG
JMSF046A11+ ACTGTTATCATATTTGTNGCCGTCATAATGTGATCTATAGCCATTACGCTGGTGTAATGG
JMSF028F15+ ACTGTTATCATATTTGTTGCCGTCATAATGTGATCTATAGCCATTACGCTGGTGTAATGG
____________________________________________________________
consensus ACTGTTATCATATTTGTTGCCGTCATAATGTGATCTATAGCCATTACGCTGGTGTAATGG
. : . : . : . : . : . :
rJMSF046A11- TACACCAGGGGAAACTTTTGCAGAATATGTTTGGTGCTCTGAGAACCGGCATGATGCAGA
rJMSF028F15- TACACCAGGGGAAACTTTTGCAGAATATGTTTGGTGCTCTGAGAACCGGCATGATGCAGA
rJMSF008N20- TACACCAGGGGAAACTTTTGCAGAATATGTTTGGTGCTCTGAGAACCGGCATGATGCAGA
JMSF046A11+ TACACCAGGGGAAACTTTTGCAGAATATGTTTGGTGCTCTGAGAACCGGCATGATGCAGA
JMSF028F15+ TACACCAGGGGAAACTTTTGCAGAATATGTTTGGTGCTCTGAGAACCGGCATGATGCAGA
____________________________________________________________
consensus TACACCAGGGGAAACTTTTGCAGAATATGTTTGGTGCTCTGAGAACCGGCATGATGCAGA
. : . : . : . : . : . :
rJMSF046A11- TAATCTTGGAGAATGTTGAGAAATTTCCTTATCATAAGGTGGGACAGGGTGAAGCCTTTG
rJMSF028F15- TAATCTTGGAGAATGTTGAGAAATTTCCTTATCATAAGGTGGGACAGGGTGAAGCCTTTG
rJMSF008N20- TAATCTTGGAGAATGTTGAGAAATTTCCTTATCATAAGGTGGGACAGGGTGAAGCCTTTG
JMSF046A11+ TAATCTTGGAGAATGTTGAGAAATTTCCTTATCATAAGGTGGGACAGGGTGAAGCCTTTG
JMSF028F15+ TAATCTTGGAGAATGTTGAGAAATTTCCTTATCATAAGGTGGGACAGGGTGAAGCCTTTG
____________________________________________________________
consensus TAATCTTGGAGAATGTTGAGAAATTTCCTTATCATAAGGTGGGACAGGGTGAAGCCTTTG
. : . : . : . : . : . :
rJMSF046A11- TTTAATAGAAGAATTTAGTGCGGGAGGGTTTTCCATTGGTGAGTTCATTGACGGCTTATC
rJMSF028F15- TTTAATAGAAGAATTTAGTGCGGGAGGGTTTTCCATTGGTGAGTTCATTGACGGCTTATC
rJMSF008N20- TTTAATAGAAGAATTTAGTGCGGGAGGGTTTTCCATTGGTGAGTTCATTGACGGCTTATC
JMSF046A11+ TTTAATAGAAGAATTTAGTGCGGGAGGGTTTTCCATTGGTGAGTTCATTGACGGCTTATC
JMSF028F15+ TTTAATAGAAGAATTTAGTGCGGGAGGGTTTTCCATTGGTGAGTTCATTGACGGCTTATC
____________________________________________________________
consensus TTTAATAGAAGAATTTAGTGCGGGAGGGTTTTCCATTGGTGAGTTCATTGACGGCTTATC
. : . : . : . : . : . :
rJMSF046A11- TCTCCCTGAAATCGCAAATTTCAGTGTTTTGTTGTAGAGTGTCACCAGACCAGAGAAGAG
rJMSF028F15- TCTCCCTGAAATCGCAAATTTCAGTGTTTTGTTGTAGAGTGTCACCAGACCAGAGAAGAG
rJMSF008N20- TCTCCCTGAAATCGCAAATTTCAGTGTTTTGTTGTAGAGTGTCACCAGACCAGAGAAGAG
JMSF046A11+ TCTCCCTGAAATCGCAAATTTCAGTGTTTTGTTGTAGAGTGTCACCAGACCAGAGAAGAG
JMSF008N20+ AAATCGCAAATTTCAGTGTTTTGTTGTAGAGTGTCACCAGACCAGAGAAGAG
JMSF028F15+ TCTCCCTGAAATCGCAAATTTCAGTGTTTTGTTGTAGAGTGTCACCAGACCAGAGAAGAG
____________________________________________________________
consensus TCTCCCTGAAATCGCAAATTTCAGTGTTTTGTTGTAGAGTGTCACCAGACCAGAGAAGAG
. : . : . : . : . : . :
rJMSF046A11- TTTGACAGCATACTCTGCTATCTCCTCTGTCTCATAGAGGGCAAACGCATA
rJMSF028F15- TTTGACAGCATACTCTGCTATCTCCTCTGTCTCATAGAGGGCAAACGCATAGCCTTTTGG
rJMSF008N20- TTTGACAGCATACTCTGCTATCTCCTCTGTCTCATAGAGGGCAAACGCATAGCCTTTTGG
JMSF046A11+ TTTGACAGCATACTCTGCTATCTCCTCTGTCTCATAGAGGGCAAACGCATAGCCTTTTGG
JMSF008N20+ TTTGACAGCATACTCTGCTATCTCCTCTGTCTCATAGAGGGCAAACGCATAGCCTTTTGG
JMSF028F15+ TTTGACAGCATACTCTGCTATCTCCTCTGTCTCATAGAGGGCAAACGCATAGCCTTTTGG
____________________________________________________________
consensus TTTGACAGCATACTCTGCTATCTCCTCTGTCTCATAGAGGGCAAACGCATAGCCTTTTGG
. : . : . : . : . : . :
rJMSF028F15- CTTATCAGTTTCCCTATCACGAGGAACATGCAAGTCAACCACACGACCAGCTTGAAATAA
rJMSF008N20- CTTATCAGTTTCCCTATCACGAGGAACATGCAAGTCAACCACACGACCAGCTTG-AATAA
JMSF046A11+ CTTATCAGTTTCCCTATCACGAGGAACATGCAAGTCAACCACACGACCAGCTTG-AATAA
JMSF008N20+ CTTATCAGTTTCCCTATCACGAGGAACATGCAAGTCAACCACACGACCAGCTTG-AATAA
JMSF028F15+ CTTATCAGTTTCCCTATCACGAGGAACATGCAAGTCAACCACACGACCAGCTTG-AATAA
____________________________________________________________
consensus CTTATCAGTTTCCCTATCACGAGGAACATGCAAGTCAACCACACGACCAGCTTG-AATAA
. : . : . : . : . : . :
rJMSF028F15- GGATATCATACAACACCCTGTCACTTACTCTCTCATCCAAATTACCTACGTACACGGTGC
rJMSF008N20- GGATATCATACAACACCCTGTCACTTACTCTCTCATCCAAATTACCTACGTACACGGTGC
JMSF046A11+ GGATATCATACAACACCCTGTCACTTACTCTCTCATCCAAATTACCTACGTACACGGTGC
JMSF008N20+ GGATATCATACAACACCCTGTCACTTACTCTCTCATCCAAATTACCTACGTACACGGTGC
JMSF028F15+ GGATATCATACAACACCCTGTCACTTACTCTCTCATCCAAATTACCTACGTACACGGTGC
____________________________________________________________
consensus GGATATCATACAACACCCTGTCACTTACTCTCTCATCCAAATTACCTACGTACACGGTGC
. : . : . : . : . : . :
rJMSF028F15- A
rJMSF008N20- AATTCGCGTTCTCCGCCATAGTCGACCTTTATCCCACAATCCTATTGAGAGAGAGANTGT
JMSF046A11+ AATTCGCGTTCTCCGCCATAGTCGACCTTTATCCCACAATCCTATTGAGAGAGAGAATGT
JMSF008N20+ AATTCGCGTTCTCCGCCATAGTCGACCTTTATCCCACAATCCTATTGAGAGAGAGAATGT
JMSF028F15+ AATTCGCGTTCTCCGCCATAGTCGACCTTTATCCCACAATCCTATTGAGAGAGAGAATGT
____________________________________________________________
consensus AATTCGCGTTCTCCGCCATAGTCGACCTTTATCCCACAATCCTATTGAGAGAGAGAATGT
. : . : . : . : . : . :
rJMSF008N20- GGCGTGGATTTGTGATGG
JMSF046A11+ GGCGTGGATTTGTGATGGTGATTTAGATTTTAT
JMSF008N20+ GGCGTGGATTTGTGATGGTGATTTAGATTTTAT
JMSF028F15+ GGCGTGGATTTGTGATGGTGATTTAGATTTTATTCTGCCTGGAATCCAAAAATCTTAAGG
____________________________________________________________
consensus GGCGTGGATTTGTGATGGTGATTTAGATTTTATTCTGCCTGGAATCCAAAAATCTTAAGG
. : . : . : . : . : . :
JMSF028F15+ TAAGTAGTACCGCGTCGTCAAGGAGACGGGGATTGCTCAAGTAAGCAGCTTACGTCGGCC
____________________________________________________________
consensus TAAGTAGTACCGCGTCGTCAAGGAGACGGGGATTGCTCAAGTAAGCAGCTTACGTCGGCC