Contig 013397:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028B24Sequence653013397 (2)gb|KDP32324.1|4e-14hypothetical protein JCGZ_13249 [Jatropha curcas]711013397 (2)ref|XP_009783391.1|7e-24PREDICTED: eukaryotic translation initiation factor 3 subunit J-A-like [Nicotia

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-                                ATTCTCTGCCTTCTTATCCCGCGTAACACCTTGATCAT
                      ____________________________________________________________
consensus                                   ATTCTCTGCCTTCTTATCCCGCGTAACACCTTGATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          CCTTTTTCTCAGGTTGGTTGCATCCGAATTCTGCAAGCATAGCTTCAAGTTCTTCAAGTT
                      ____________________________________________________________
consensus             CCTTTTTCTCAGGTTGGTTGCATCCGAATTCTGCAAGCATAGCTTCAAGTTCTTCAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          CCTTCTTCTTCAATTCTTTTTTTGACAGCTGTCTTTCTGATTCTTTGGGTGCCGCAACTT
                      ____________________________________________________________
consensus             CCTTCTTCTTCAATTCTTTTTTTGACAGCTGTCTTTCTGATTCTTTGGGTGCCGCAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          CAGCAGGTTTCTTAACAATAGGCTCCTTCTCTACTGGAAGTGCTTCACTCTCAGGCTCAT
                      ____________________________________________________________
consensus             CAGCAGGTTTCTTAACAATAGGCTCCTTCTCTACTGGAAGTGCTTCACTCTCAGGCTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          GCTCCTGCTCTTGCTCAATATCCTCATCCACTTCATCGAGGCCTTCATCTTCTTCACTTT
                      ____________________________________________________________
consensus             GCTCCTGCTCTTGCTCAATATCCTCATCCACTTCATCGAGGCCTTCATCTTCTTCACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          CACTCTCCTCTATAACAGGTCCTTTGGATTGCTGCTCCTGAGCTGCAGCAGGACCCCAAG
                      ____________________________________________________________
consensus             CACTCTCCTCTATAACAGGTCCTTTGGATTGCTGCTCCTGAGCTGCAGCAGGACCCCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          AAACCTGAGGCGGAGCCGTTAAAACATAGTAATCATCGTCATTTTCGTCCTCGATATCGG
JMSF028B24+                                    ATAGTAATCATCGTCATTTTCGTCCTCGATATCGG
                      ____________________________________________________________
consensus             AAACCTGAGGCGGAGCCGTTAAAACATAGTAATCATCGTCATTTTCGTCCTCGATATCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          CCCAAGATTTCGTAGTGAGCGGCGCCGGAGCCCAGATAACCTGCGGCTGAGCCTCCTTGT
JMSF028B24+           CCCAAGATTTCGTAGTGAGCGGCGCCGGAGCCCAGATAACCTGCGGCTGAGCCTCCTTGT
                      ____________________________________________________________
consensus             CCCAAGATTTCGTAGTGAGCGGCGCCGGAGCCCAGATAACCTGCGGCTGAGCCTCCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          TGGACGAACTGGAAGCGCTCTTACTCTTGGAATCCTTATCGGACTTCTTCTTCTTCCTCA
JMSF028B24+           TGGACGAACTGGAAGCGCTCTTACTCTTGGAATCCTTATCGGACTTCTTCTTCTTCCTCA
                      ____________________________________________________________
consensus             TGGACGAACTGGAAGCGCTCTTACTCTTGGAATCCTTATCGGACTTCTTCTTCTTCCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          GGGTTCCCAGCGCCGCGAAAACATTAGTGCTGTTAATCACCAACTGATCATCCTTCCTGT
JMSF028B24+           GGGTTCCCAGCGCCGCGAAAACATTAGTGCTGTTAATCACCAACTGATCATCCTTCCTGT
                      ____________________________________________________________
consensus             GGGTTCCCAGCGCCGCGAAAACATTAGTGCTGTTAATCACCAACTGATCATCCTTCCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B24-          TTCCACCCCCCACCATTTT                                         
JMSF028B24+           TTCCACCCCCCACCATTTTCCCCTGAATCTAAACGCCACCAACACAGCTCGCTCCAGAAT
                      ____________________________________________________________
consensus             TTCCACCCCCCACCATTTTCCCCTGAATCTAAACGCCACCAACACAGCTCGCTCCAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028B24+           ACCTATATCTACACGATTCAAACGATATCCGAATGTGCACGTGAAACAATCCCAGATTTT
                      ____________________________________________________________
consensus             ACCTATATCTACACGATTCAAACGATATCCGAATGTGCACGTGAAACAATCCCAGATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028B24+           ATATGATCGGATAAAAACGAAAGATGATAACTTGACAGGGAAATTCCAGCGAGGGGGGAA
                      ____________________________________________________________
consensus             ATATGATCGGATAAAAACGAAAGATGATAACTTGACAGGGAAATTCCAGCGAGGGGGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028B24+           TTTCCTTCCTCCGGTAAAGCAAAGGCAAATGTGAATAGAGATTAGACGGCAAACAATTCG
                      ____________________________________________________________
consensus             TTTCCTTCCTCCGGTAAAGCAAAGGCAAATGTGAATAGAGATTAGACGGCAAACAATTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028B24+           AATTGGGAAGAGGAGAATCTATGAAGCCGAAGGAGATAAAGGAATGAAGAGCAGAAGGTC
                      ____________________________________________________________
consensus             AATTGGGAAGAGGAGAATCTATGAAGCCGAAGGAGATAAAGGAATGAAGAGCAGAAGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028B24+           GGTTACGGTAAAATTAGGGTTTGGATGAGAGATGAGGGTAGTAGCTAAAGACGGAGAAGA
                      ____________________________________________________________
consensus             GGTTACGGTAAAATTAGGGTTTGGATGAGAGATGAGGGTAGTAGCTAAAGACGGAGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028B24+           GAGGATTGAAATTTCTGCGAGTTTCTTTGGTCCATGGACTGATGGAGGGACAGAGGCTCC
                      ____________________________________________________________
consensus             GAGGATTGAAATTTCTGCGAGTTTCTTTGGTCCATGGACTGATGGAGGGACAGAGGCTCC