| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF030H19 | Sequence | 382 | 013396 (4) | 747 | 005358 (2) | emb|CDP08540.1| | 5e-68 | unnamed protein product [Coffea canephora] | |||
| JMSF012H07 | Sequence | 240 | 013396 (4) | 751 | 008568 (5) | ref|XP_002278255.1| | 2e-114 | PREDICTED: actin-related protein 7 [Vitis vinifera] emb|CBI24906.3| unnamed prot | |||
| JMSF027N07 | Sequence | 582 | 013396 (4) | ref|XP_009621117.1| | 4e-14 | PREDICTED: actin-related protein 7 [Nicotiana tomentosiformis] | 714 | 008568 (5) | ref|XP_009783911.1| | 2e-110 | PREDICTED: actin-related protein 7 isoform X2 [Nicotiana sylvestris] |
| JMSF031D21 | Sequence | 679 | 013396 (4) | emb|CDP04578.1| | 5e-46 | unnamed protein product [Coffea canephora] | 689 | 008568 (5) | ref|XP_009783911.1| | 8e-110 | PREDICTED: actin-related protein 7 isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF031D21+ TACTAAC
____________________________________________________________
consensus TACTAAC
. : . : . : . : . : . :
JMSF031D21+ TGTTCCTTGATAGCCTTGGGAGTGCAAAGTGGATCAGTGAACAAGATTTGGCCCTCATTC
____________________________________________________________
consensus TGTTCCTTGATAGCCTTGGGAGTGCAAAGTGGATCAGTGAACAAGATTTGGCCCTCATTC
. : . : . : . : . : . :
JMSF031D21+ CCCATTTCCCAGCCAAGGCCGGTGTAAAGCACATGGTGCAATAGGTCTTCCATTGCATCC
____________________________________________________________
consensus CCCATTTCCCAGCCAAGGCCGGTGTAAAGCACATGGTGCAATAGGTCTTCCATTGCATCC
. : . : . : . : . : . :
JMSF031D21+ CAATCCTTCACAAAGCCACGGACAACTGGGTCCACCGCGTCTTCCTCCACCGTTGCCGTC
____________________________________________________________
consensus CAATCCTTCACAAAGCCACGGACAACTGGGTCCACCGCGTCTTCCTCCACCGTTGCCGTC
. : . : . : . : . : . :
JMSF031D21+ GCCTCCTCAGCCTCCCCATCCGCGGCACTGTCATCCTCAGGAACGCGTTTCATTTGAGTT
JMSF027N07+ TCCGCGGCACTGTCATCCTCAGGAACGCGTTTCATTTGAGTT
____________________________________________________________
consensus GCCTCCTCAGCCTCCCCATCCGCGGCACTGTCATCCTCAGGAACGCGTTTCATTTGAGTT
. : . : . : . : . : . :
JMSF031D21+ GGAATTATCATGGACGGAGCTTGGTCAGGGACGGCGAAGCCGGCTTTGAGAAATTTAGAA
JMSF027N07+ GGAATTATCATGGACGGAGCTTGGTCAGGGACGGCGAAGCCGGCTTTGAGAAATTTAGAA
____________________________________________________________
consensus GGAATTATCATGGACGGAGCTTGGTCAGGGACGGCGAAGCCGGCTTTGAGAAATTTAGAA
. : . : . : . : . : . :
JMSF031D21+ CCAGCATCCACCACCACCGCCTCCATCACGGGAGATTTGAGTAATAGATGGATAAATATC
JMSF027N07+ CCAGCATCCACCACCACCGCCTCCATCACGGGAGATTTGAGTAATAGATGGATAAATATC
____________________________________________________________
consensus CCAGCATCCACCACCACCGCCTCCATCACGGGAGATTTGAGTAATAGATGGATAAATATC
. : . : . : . : . : . :
JMSF031D21+ CCGCCGATGGGGAAGAATGTGCAGTATGTTGTTTGAAGGAGTGGAGACTACCGTGACTCA
JMSF027N07+ CCGCCGATGGGGAAGAATGTGCAGTATGTTGTTTGAAGGAGTGGAGACTACCGTGACTCA
____________________________________________________________
consensus CCGCCGATGGGGAAGAATGTGCAGTATGTTGTTTGAAGGAGTGGAGACTACCGTGACTCA
. : . : . : . : . : . :
JMSF031D21+ ATGAGTGGCTGAAGGGCAAGGCTAAGGTGAGGTCCGCAGAGCCGCTAAGTGCCTGAGTCC
JMSF027N07+ ATGAGTGGCTGAAGGGCAAGGCTAAGGTGAGGTCCGCAGAGCCGCTAAGTGCCTGAGTCC
____________________________________________________________
consensus ATGAGTGGCTGAAGGGCAAGGCTAAGGTGAGGTCCGCAGAGCCGCTAAGTGCCTGAGTCC
. : . : . : . : . : . :
JMFF030H19+ GCCGCTGAGATTGCTGAGTCGATGAAGTGAGGTCTGACCGTCTGAGGATGT
JMSF031D21+ CATACGGTCGCCGCTGAGACGGCTGAGTCGATGAAGTGAGGTCTGACCGTCTGAGGATGT
JMSF012H07+ GCCGCTGAGACGGCTGAGTCGATGAAGTGAGGTCTGACCGTCTGAGGATGT
JMSF027N07+ CATACGGTCGCCGCTGAGACGGCTGAGTCGATGAAGTGAGGTCTGACCGTCTGAGGATGT
____________________________________________________________
consensus CATACGGTCGCCGCTGAGACGGCTGAGTCGATGAAGTGAGGTCTGACCGTCTGAGGATGT
. : . : . : . : . : . :
JMFF030H19+ GAGGACTGAGGAGCGAGGGCGGAGGC
JMSF031D21+ GAGGACTGAGGAGCGAGGACGGAGGCCGGAGGGCGTGAGGGAGTCACTGCCTGACCGGAG
JMSF012H07+ GAGGACTGAGGAGCGAGGACGGAGGCCGGAGGGCGTGAGGGAGCCACTGCCTGACCGGAG
JMSF027N07+ GAGGACTGAGGAGCGAGGACGGAGGCCGGAGGGCGTGAGGGAGCCACTGCCTGACCGGAG
____________________________________________________________
consensus GAGGACTGAGGAGCGAGGACGGAGGCCGGAGGGCGTGAGGGAGCCACTGCCTGACCGGAG
. : . : . : . : . : . :
JMSF031D21+ TGTCGCCAATGGCGGAGGGAGTAAGGTACAGAGGCGGTGAGACACGACGGAGATGAGGAG
JMSF012H07+ TGTCGCCAATGGCGGAGGGAGTAAGGTACAGAGGCGGTGAGACACGACGGAGATGAGGAG
JMSF027N07+ TGTCGCCAATGGCGGAGGGAGTAAGGTACAGAGGCGGTGAGACACGACGGAGATGAGGAG
____________________________________________________________
consensus TGTCGCCAATGGCGGAGGGAGTAAGGTACAGAGGCGGTGAGACACGACGGAGATGAGGAG
. : . : . : . : . : . :
JMSF031D21+ AACCGTTGTCT
JMSF012H07+ AACCGTTGTCTGTGGCTTGGAGTACAGAA
JMSF027N07+ AACCGTTGTCTGTGGCTTGGAGTACAGAAGCAGAAGCCGAAGAAGGGATCAGGGCTATGC
____________________________________________________________
consensus AACCGTTGTCTGTGGCTTGGAGTACAGAAGCAGAAGCCGAAGAAGGGATCAGGGCTATGC
. : . : . : . : . : . :
JMSF027N07+ TATTTTGTGTTTTGCATTGGGCTATTGGATTGGGTCAAAAAAATTAAAGTATTTCTTTTC
____________________________________________________________
consensus TATTTTGTGTTTTGCATTGGGCTATTGGATTGGGTCAAAAAAATTAAAGTATTTCTTTTC