Contig 013393:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN043B19Sequence348013393 (2)emb|CDP05225.1|2e-38unnamed protein product [Coffea canephora]
JMSF027G02Sequence622013393 (2)ref|XP_006353339.1|2e-47PREDICTED: transmembrane protein 161A-like [Solanum tuberosum]716023547ref|XP_009603018.1|200PREDICTED: uncharacterized protein LOC104098065 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN043B19+                                                               CTCAAAAG
JMSF027G02+                                                 TTGGAGGAAGACCCCTCAAAAG
                      ____________________________________________________________
consensus                                                   TTGGAGGAAGACCCCTCAAAAG
 
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JMFN043B19+           CAGTCCTAGCTATCAAAACAAACAGCCTACACACAACAAAACATCCTAAAAAGACCGGAA
JMSF027G02+           CAGTCCTAGCTATCAAAACAAACAGCCTACNCACAACAAAACATCCTAAAAAGACCGGAA
                      ____________________________________________________________
consensus             CAGTCCTAGCTATCAAAACAAACAGCCTACACACAACAAAACATCCTAAAAAGACCGGAA
 
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JMFN043B19+           CCACAGATCCATGTCCTGGCCACCCAGAATCTCCAGATTTCCCCAAGAACCGGTCAAGCA
JMSF027G02+           CCACAGATCCATGTCCTGGCCACCCAGAATCTCCAGATTTCCCCAAGAACCGGTCAAGCA
                      ____________________________________________________________
consensus             CCACAGATCCATGTCCTGGCCACCCAGAATCTCCAGATTTCCCCAAGAACCGGTCAAGCA
 
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JMFN043B19+           ACAAGCAGGAAACAGCTACAACAGTGGAATTGAAAACATGTTTAAATTCATTGAAATATA
JMSF027G02+           ACAAGCAGGAAACAGCTACAACAGTGGAATTGAAAACATGTTTAAATTCATTGAAATATA
                      ____________________________________________________________
consensus             ACAAGCAGGAAACAGCTACAACAGTGGAATTGAAAACATGTTTAAATTCATTGAAATATA
 
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JMFN043B19+           TTCTTGTTTGGAGGTGGGTGTCAATCAGCTTCAGCCTAAAGATCTGAGCTTTATTTTCAT
JMSF027G02+           TTCTTGTTTGGAGGTGGGTGTCAATCAGCTTCAGCCTAAAGATCTGAGCTTTATTTTCAT
                      ____________________________________________________________
consensus             TTCTTGTTTGGAGGTGGGTGTCAATCAGCTTCAGCCTAAAGATCTGAGCTTTATTTTCAT
 
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JMFN043B19+           CAAACTCGAATTTAGACTTTTTCCTGGGCTTGAGTTCAGATTCAACACTACCTGGCCGTC
JMSF027G02+           CAAACTCGAATTTAGACTTTTTCCTGGGCTTGAGTTCAGATTCAACACTACCTGGCCGTC
                      ____________________________________________________________
consensus             CAAACTCGAATTTAGACTTTTTCCTGGGCTTGAGTTCAGATTCAACACTACCTGGCCGTC
 
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JMFN043B19+           GAATCGCAGCCCTGGCACCGTT                                      
JMSF027G02+           GAATCGCAGCCCTGGCACCGTTTGAAGAAGTGGGGTTGACGTCGTCTGGGTGGACATAGG
                      ____________________________________________________________
consensus             GAATCGCAGCCCTGGCACCGTTTGAAGAAGTGGGGTTGACGTCGTCTGGGTGGACATAGG
 
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JMSF027G02+           TGAAGAGGCCATGGAGGAATAAAGCAGGGATCTTGAACAAGTAGAGGAGGAGAAAGAGGG
                      ____________________________________________________________
consensus             TGAAGAGGCCATGGAGGAATAAAGCAGGGATCTTGAACAAGTAGAGGAGGAGAAAGAGGG
 
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JMSF027G02+           AGAAGGCAAGCGCGGTTTGGAGAATGAAGCTGCTTGATGAGAATACAAGTGCAGATAAAG
                      ____________________________________________________________
consensus             AGAAGGCAAGCGCGGTTTGGAGAATGAAGCTGCTTGATGAGAATACAAGTGCAGATAAAG
 
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JMSF027G02+           AAGCGATCATGATATTCAGAAATTATGGAGACAGCATCCAGATTCCNCCTAAGACTTTGA
                      ____________________________________________________________
consensus             AAGCGATCATGATATTCAGAAATTATGGAGACAGCATCCAGATTCCNCCTAAGACTTTGA
 
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JMSF027G02+           TGTTTACAGAGTTTTGCAGTGAAGGGACGAAATGGCGGAAGATCTAAGCACATGAGCACC
                      ____________________________________________________________
consensus             TGTTTACAGAGTTTTGCAGTGAAGGGACGAAATGGCGGAAGATCTAAGCACATGAGCACC