Contig 013388:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF026K09-                                                                     A
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consensus                                                                        A
 
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rJMSF026K09-          CAACTGTTATCAAACAACACATTATAATAAATCTTAAAGTCTCTTAGTGTACAGCTTAAA
                      ____________________________________________________________
consensus             CAACTGTTATCAAACAACACATTATAATAAATCTTAAAGTCTCTTAGTGTACAGCTTAAA
 
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rJMSF026K09-          GTACACATTCATACGATTAGCAGACCGGCCACCAAGTGGAATGAACAGTAGTAATCATAT
JMSF026K09+                                                             GTAATCATAT
                      ____________________________________________________________
consensus             GTACACATTCATACGATTAGCAGACCGGCCACCAAGTGGAATGAACAGTAGTAATCATAT
 
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rJMSF026K09-          ATATAAATTAAAGAAATGAATTTCATAGGAATTTAATAGAATTATAATGAAGTGGATTGA
JMFN039H17+                             AATTTCATAGGAATTTAATAGAATTATAATGAAGTGGATTGA
JMFN043N22+                                                          TGAAGTGGATGGA
JMFN039H23+                             AATTTCATAGGAATTTAATAGAATTATAATGAAGTGGATTGA
JMSF026K09+           ATATAAATTAAAGAAATGAATTTCATAGGAATTTAATAGAATTATAATGAAGTGGATTGA
                      ____________________________________________________________
consensus             ATATAAATTAAAGAAATGAATTTCATAGGAATTTAATAGAATTATAATGAAGTGGATTGA
 
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rJMSF026K09-          GTATTTGGATAATACAATTCACGTAATGCATGCATGAAAAGAATCGATCACGTCTTAGTG
JMFN039H17+           GTATTTGGATAATACAATTCACGTAATGCATGCATGAAAAGAATCGATCACGTCTTAGTG
JMFN043N22+           GTATTTGGATAATACAATTCACGTAATGCATGCATGAAAAGAATCGATCACGTCTTAGTG
JMFN039H23+           GTATTTGGATAATACAATTCACGTAATGCATGCATGAAAAGAATCGATCACGTCTTAGTG
JMSF026K09+           GTATTTGGATAATACAATTCACGTAATGCATGCATGAAAAGAATCGATCACGTCTTAGTG
                      ____________________________________________________________
consensus             GTATTTGGATAATACAATTCACGTAATGCATGCATGAAAAGAATCGATCACGTCTTAGTG
 
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rJMSF026K09-          GGGAGGAGCTGAGGTGGAGAGTTTTAGTAGATGGGAGGTGGGGGTGGTGGGGACTTGTAT
JMFN039H17+           GGGAGGAGCTGAGGTGGAGAGTTTTAGTAGATGGGAGGTGGGGGTGGTGGGGACTTGTAT
JMFN043N22+           GGGAGGAGCTGAGGTGGAGAGTTTTAGTAGATGGGAGGTGGGGGTGGTGGGGACTTGTAT
JMFN039H23+           GGGAGGAGCTGAGGTGGAGAGTTTTAGTAGATGGGAGGTGGGGGTGGTGGGGACTTGTAT
JMSF026K09+           GGGAGGAGCTGAGGTGGAGAGTTTTAGTAGATGGGAGGTGGGGGTGGTGGGGACTTGTAT
                      ____________________________________________________________
consensus             GGGAGGAGCTGAGGTGGAGAGTTTTAGTAGATGGGAGGTGGGGGTGGTGGGGACTTGTAT
 
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rJMSF026K09-          ACGTATGGGTTTACAGGTGGGGGTGGTGGGGACTTGTACACGTATGGGTTTACAGGTGGG
JMFN039H17+           ACGTATGGGTTTACAGGTGGGGGTGGTGGGGACTTGTACACGTATGGGTTTACAGGTGGG
JMFN043N22+           ACGTATGGGTTCACAGGTGGGGGTGGTGGGGACTTGTACACGTATGGGTTTACAGGTGGG
JMFN035H24+                          GGTGGGGGTTGTGGGGTCTTGTACACGTATGGGTTTACAGGTGGG
JMFN039H23+           ACGTATGGGTTTACAGGTGGGGGTGGTGGGGACTTGTACACGTATGGGTTTACAGGTGGG
JMSF026K09+           ACGTATGGGTTTACAGGTGGGGGTGGTGGGGACTTGTACACGTATGGGTTTACAGGTGGG
                      ____________________________________________________________
consensus             ACGTATGGGTTTACAGGTGGGGGTGGTGGGGACTTGTACACGTATGGGTTTACAGGTGGG
 
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rJMSF026K09-          GGAGGAGACTTGTANACGTANGGATTATGCGGCGGCGGAGACCANTATACCGGATGTGGT
JMFN039H17+           GGAGGAGACTTGTAGACGTAGGGATTATGCGGCGGCGGAGACCAGTATACCGGATGTGGT
JMFN043N22+           GGAGGAGACTTGTAGTCGTAGGGATTATGCGGCGGCGGAGACCAGTATACCGGATGTGGT
JMFN035H24+           GGAGGAGACTTGTAGACGTAGGGACTATGCGGCGGGGGAGACCAGTATACCGGATGTGGT
JMFN039H23+           GGAGGAGACTTGTAGACGTAGGGATTATGCGGCGGCGGAGACCAGTATACCGGATGTGGT
JMSF026K09+           GGAGGAGACTTGTAGACGTAGGGATTATGCGGCGGCGGAGACCAGTATACCGGATGTGGT
                      ____________________________________________________________
consensus             GGAGGAGACTTGTAGACGTAGGGATTATGCGGCGGCGGAGACCAGTATACCGGATGTGGT
 
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rJMSF026K09-          GGTGGTGGCCGTGGAGATGGATGACNTACNCNNGGAGGTTTATACNGNTCTGCTGG    
JMFN039H17+           GGTGGTGGCCGTGGAGATGGATGACATACACAAGGAGGTTTATACGGTTCTGCTGGGGGG
JMFN043N22+           GGTGGTGCCCGTGGAGATGGATGACATACACAAGGAGGTTTATCCGGTTCTGCTGGGGGG
JMFN035H24+           GGTGGTGGCCGTGGAGATGGATGACA                                  
JMFN039H23+           GGTGGTGGCCGTGGAGATGGATGACATACACAAGGAGGTTTATACGGTTCTGCTGGGGGG
JMSF026K09+           GGTGGTGGCCGTGGAGATGGATGACATACACAAGGAGGTTTATACGGTTCTGCTGGGGGG
                      ____________________________________________________________
consensus             GGTGGTGGCCGTGGAGATGGATGACATACACAAGGAGGTTTATACGGTTCTGCTGGGGGG
 
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JMFN039H17+           GATTTGTAAACTGGCGGTGATGGTGGCGGAGGAGAGCTGTAGTGGTAAACCGGCGGCGGT
JMFN043N22+           GATTTGTAAACTGGCGGTGATGGTGGCGGAGGAGAGCTGTAGTGGTAAACCGGCGGCGGT
JMFN039H23+           GATTTGTAAACTGGCGGTGATGGTGGCGGAGGAGAGCTGTAGTGGTAAACCGGCGGCGGT
JMSF026K09+           GATTTGTAAACTGGCGGTGATGGTGGCGGAGGAGAGCTGTAGTGGTAAACCGGCGGCGGT
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consensus             GATTTGTAAACTGGCGGTGATGGTGGCGGAGGAGAGCTGTAGTGGTAAACCGGCGGCGGT
 
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JMFN039H17+           GGCGGCGGAGAGTTGTAGTTGTAAACCGGAGGATGTTTAGGATAAGGATGTTCGGGTAGC
JMFN043N22+           GGCGGCGGAGAGTTGTAGTTGTAAACCGGAGGATGTTTAGGATAAGGATGTTCGGGTAGC
JMFN039H23+           GGCGGCGGAGAGTTGTAGTTGTAAACCGGAGGATGTTTAGGATAAGGATGTTCGGGTAGC
JMSF026K09+           GGCGGCGGAGAGTTGTAGTTGTAAACCGGAGGATGTTTAGGATAAGGATGTTCGGGTAGC
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consensus             GGCGGCGGAGAGTTGTAGTTGTAAACCGGAGGATGTTTAGGATAAGGATGTTCGGGTAGC
 
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JMFN039H17+           GGTGGCAGTTCCGGCGGCTCCTGGAACCAAGCCGGATGTTTTGGAGAAGAGTATTCAGAG
JMFN043N22+           GGTGGCAGTTCCGGCGGCTCCTGGAACCAAGCCGGATGTTTTGGAGAAGAGTATTCAGAG
JMFN039H23+           GGTGGCAGTTCCGGCGGCTCCTGGAACCAAGCCGGATGTTTTGGAGAAGAGTATTCAGAG
JMSF026K09+           GGTGGCAGTTCCGGCGGCTCCTGGAACCAAGCCGGATGTTTTGGAGAAGAGTATTCAGAG
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consensus             GGTGGCAGTTCCGGCGGCTCCTGGAACCAAGCCGGATGTTTTGGAGAAGAGTATTCAGAG
 
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JMFN039H17+           TGTGCGGAACACAATGAAGAGTAGGCGGCTAAGGAGAGTAGTGTCACTAAAATAGTGGCC
JMFN043N22+           TGTGCGGAACACAATGAAGAGTAGGCGGCTAAGGAGAGTAGTGTCACTAAAATAGTGGCC
JMFN039H23+           TGTGCGGAACACAATGAAGAGTAGGCGGCTAAGGAGAGTAGTGTCACTAAAATAGTGGCC
JMSF026K09+           TGTGCGGAACACAATGAAGAGTAGGCGGCTAAGGAGAGTAGTGTCACTAAAATAGTGGCC
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consensus             TGTGCGGAACACAATGAAGAGTAGGCGGCTAAGGAGAGTAGTGTCACTAAAATAGTGGCC
 
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JMFN039H17+           ATTAGAGACTCCATTGTTGCAACGCTAGCTAACATGCT                      
JMFN043N22+           ATTAGAGACTCCATTGTTGCAACGCTAGCTAACATGCT                      
JMFN039H23+           ATTAGAGACTCCATTGTTGCAACGCTAGCTAACATGCT                      
JMSF026K09+           ATTAGAGACTCCATTGTTGCAACGCTAGCTAACATGCTTAATTGATATGATAGATAGATC
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consensus             ATTAGAGACTCCATTGTTGCAACGCTAGCTAACATGCTTAATTGATATGATAGATAGATC