Contig 013377:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS004G06Sequence424013377 (3)gb|KHG08985.1|1e-38DnaJ subfamily C member 7 [Gossypium arboreum]
JMSF025C08Sequence674013377 (3)ref|XP_009768383.1|221PREDICTED: uncharacterized protein LOC104219395 [Nicotiana sylvestris]805013974 (2)ref|XP_002320311.2|5e-80DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp
JMSF036K03Sequence681013377 (3)ref|XP_009768383.1|228PREDICTED: uncharacterized protein LOC104219395 [Nicotiana sylvestris]716013974 (2)ref|XP_002320311.2|2e-65DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp

Alignment

This contig is upended


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JMSF036K03+                                                CATTAGCCCCAAATGGCAACACG
JMSF025C08+                                                         CAAATGGCAACACG
                      ____________________________________________________________
consensus                                                  CATTAGCCCCAAATGGCAACACG
 
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JMSF036K03+           CTTGACCTAATACCAAATATCTCCATAGACCGTCCTTTTCGCAGCTTTTGCAGAGCCCAG
JMSF025C08+           CTTGACCTAATACCAAATATCTCCATAGACCGTCCTTTTCGCAGCTTTTGCAGAGCCCAG
                      ____________________________________________________________
consensus             CTTGACCTAATACCAAATATCTCCATAGACCGTCCTTTTCGCAGCTTTTGCAGAGCCCAG
 
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JMSF036K03+           CCATGACCTTCTTCTTCAAATCGGAGACCGAGAAACACTTGAAAGTGGGCTCGTCATCCC
JMSF025C08+           CCATGACCTTCTTCTTCAAATCGGAGACCGAGAAACACTTGAAAGTGGGCTCGTCATCCC
                      ____________________________________________________________
consensus             CCATGACCTTCTTCTTCAAATCGGAGACCGAGAAACACTTGAAAGTGGGCTCGTCATCCC
 
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JMSF036K03+           CGGAGGAGAGAAGCTTCACACGCTCCCTAGACAGCGGCCTGGAGGAGCCATCCGACGATT
JMSF025C08+           CGGAGGAGAGAAGCTTCACACGCTCCCTAGACAGCGGCCTGGAGGAGCCATCCGACGATT
                      ____________________________________________________________
consensus             CGGAGGAGAGAAGCTTCACACGCTCCCTAGACAGCGGCCTGGAGGAGCCATCCGACGATT
 
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JMSF036K03+           CAGAAGAAGACGAACACGGCGACGCTTCATCCGGGGCTACTTTAAGACTGGGAATGTAGT
JMFS004G06+                                                   TTTAAGACTGGGAATGTAGT
JMSF025C08+           CAGAAGAAGACGAACACGGCGACGCTTCATCCGGGGCTACTTTAAGACTGGGAATGTAGT
                      ____________________________________________________________
consensus             CAGAAGAAGACGAACACGGCGACGCTTCATCCGGGGCTACTTTAAGACTGGGAATGTAGT
 
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JMSF036K03+           CCTGCAACATATCGGCGACGTCCTTAAACCGCCGGAGAAAAAGCAAAGTCCGCGCCTTTA
JMFS004G06+           CCTGCAACATATCGGCGACGTCCTTAAACCGCCGGAGAAAAAGCAAAGTCCGCGCCTTTA
JMSF025C08+           CCTGCAACATATCGGCGACGTCCTTAAACCGCCGGAGAAAAAGCAAAGTCCGCGCCTTTA
                      ____________________________________________________________
consensus             CCTGCAACATATCGGCGACGTCCTTAAACCGCCGGAGAAAAAGCAAAGTCCGCGCCTTTA
 
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JMSF036K03+           ACTCCATGGCCAACTCGAGTCGAGGCGAGAGAAGCAGCGCGGCATCAAGAACGTTCAGAG
JMFS004G06+           ACTCCATGGCCAACTCGAGTCGAGGCGAGAGAAGCAGCGCGGCATCAAGAACGTTCAGAG
JMSF025C08+           ACTCCATGGCCAACTCGAGTCGAGGCGAGAGAAGCAGCGCGGCATCAAGAACGTTCAGAG
                      ____________________________________________________________
consensus             ACTCCATGGCCAACTCGAGTCGAGGCGAGAGAAGCAGCGCGGCATCAAGAACGTTCAGAG
 
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JMSF036K03+           CAGAAGCCATGGCGCCGGGGTCTTGACTTGCAATCAGAACTTTCGCATCCTTCACATATT
JMFS004G06+           CAGAAGCCATGGCGCCGGGGTCTTGACTTGCAATCAGAACTTTCGCATCCTTCACATATT
JMSF025C08+           CAGAAGCCATGGCGCCGGGGTCTTGACTTGCAATCAGAACTTTCGCATCCTTCACATATT
                      ____________________________________________________________
consensus             CAGAAGCCATGGCGCCGGGGTCTTGACTTGCAATCAGAACTTTCGCATCCTTCACATATT
 
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JMSF036K03+           TATCGGCAATCTTCCTGTTTGTAAGCCACCAATGCTGCTTCTTCTCACCGCCGGCGAAAC
JMFS004G06+           TATCGGCAATCTTCCTGTTTGTAAGCCACCAATGCTGCTTCTTCTCACCGCCGGCGAAAC
JMSF025C08+           TATCGGCAATCTTCCTGTTTGTAAGCCACCAATGCTGCTTCTTCTCACCGCCGGCGAAAC
                      ____________________________________________________________
consensus             TATCGGCAATCTTCCTGTTTGTAAGCCACCAATGCTGCTTCTTCTCACCGCCGGCGAAAC
 
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JMSF036K03+           AGGGAGATTCAGACATCGTTGTTCCGAGTTCTGA--GAATGACTGACTATGTTGCGCGAG
JMFS004G06+           AGGGAGATTCAGACATCGTTGTTCCGAGTTCTGACTGAATGACTGACTATGTTGCGCGAG
JMSF025C08+           AGGGAGATTCAGACATCGTTGTTCCGAGTTCTGACTGAATGACTGACTATGTTGCGCGAG
                      ____________________________________________________________
consensus             AGGGAGATTCAGACATCGTTGTTCCGAGTTCTGACTGAATGACTGACTATGTTGCGCGAG
 
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JMSF036K03+           TATTAATTAATCCTTAAAAGCTCCACAGTCATTCTTAAACTTGATCCCAGTTTGTGGGTG
JMFS004G06+           TATTAATTAATCCTTAAAAGCTCCACAGTCATTCTTAAACTTGATCCCAGTTTGTGGGTG
JMSF025C08+           TATTAATTAATCCTTAAAAGCTCCACAGTCATTCTTAAACTTGATCCCAGTTTGTGGGTG
                      ____________________________________________________________
consensus             TATTAATTAATCCTTAAAAGCTCCACAGTCATTCTTAAACTTGATCCCAGTTTGTGGGTG
 
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JMSF036K03+           ATGGGGAGAGAAGAACAGAGAGGTAGAAGACTAAATAAGAGGCACAGGGAAGAGGCCAGC
JMFS004G06+           ATGGGGAGAGAAGAACAGAGAGGTAGAAGACTAAATAAGAGGCA                
JMSF025C08+           ATGGGGAGAGAAGAACAGAGAGGTAGAAGACTAAATAAGAGGCACAGGGAAGAGGCCAGC
                      ____________________________________________________________
consensus             ATGGGGAGAGAAGAACAGAGAGGTAGAAGACTAAATAAGAGGCACAGGGAAGAGGCCAGC