Contig 013375:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024L03Sequence671013375 (2)ref|NP_001233788.1|9e-109DNA repair protein RAD51 homolog [Solanum lycopersicum] sp|Q40134.1|RAD51_SOLLC 726013375 (2)ref|XP_009611626.1|6e-146PREDICTED: DNA repair protein RAD51 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF024L03-                                                      CAGCTGTTTGTACACA
                      ____________________________________________________________
consensus                                                         CAGCTGTTTGTACACA
 
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rJMSF024L03-          AGACATAAATCTGCAGAAATTACAAATTTGTAATCCAGAAAAAGAAGAAAGTTGCAGACA
                      ____________________________________________________________
consensus             AGACATAAATCTGCAGAAATTACAAATTTGTAATCCAGAAAAAGAAGAAAGTTGCAGACA
 
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rJMSF024L03-          AAAGTTTGGTTGGTGCCAAACTGCCAATCAGTCCTTCACATCAGTTACACCTTCAGGAGA
                      ____________________________________________________________
consensus             AAAGTTTGGTTGGTGCCAAACTGCCAATCAGTCCTTCACATCAGTTACACCTTCAGGAGA
 
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rJMSF024L03-          AATTTGAAACCTTGCTTCAGCTTCAGCTAAACATGGAGAGCTTACTACTTTACAAACGCG
                      ____________________________________________________________
consensus             AATTTGAAACCTTGCTTCAGCTTCAGCTAAACATGGAGAGCTTACTACTTTACAAACGCG
 
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rJMSF024L03-          CTCTTCTCCTCTTCCCTTTCGAAGAGCCAGCCTTGTTGTAGAAGCGTGCGCCATAATGTT
                      ____________________________________________________________
consensus             CTCTTCTCCTCTTCCCTTTCGAAGAGCCAGCCTTGTTGTAGAAGCGTGCGCCATAATGTT
 
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rJMSF024L03-          GCCGCCTATGGGTTTGATCTGAGGTCCAGCAAAAATGGCAGAACCGTCGACTTGGGCAAC
                      ____________________________________________________________
consensus             GCCGCCTATGGGTTTGATCTGAGGTCCAGCAAAAATGGCAGAACCGTCGACTTGGGCAAC
 
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rJMSF024L03-          CACTTGGTTAGTAATTACAACTGCAACACCAAACTCGTCCGCTAACTTCTGAAGGCTTCT
                      ____________________________________________________________
consensus             CACTTGGTTAGTAATTACAACTGCAACACCAAACTCGTCCGCTAACTTCTGAAGGCTTCT
 
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rJMSF024L03-          TAGGAACTTTGCCAGATGCATTTGCCTGGCAGACAACTCCCCTCGTCCAGAAAAATCAGT
                      ____________________________________________________________
consensus             TAGGAACTTTGCCAGATGCATTTGCCTGGCAGACAACTCCCCTCGTCCAGAAAAATCAGT
 
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rJMSF024L03-          CCTATAAAGTGCGGTAGCACTATCCACAATCATAAGAGCAAACCTGGTTTCTACCATCAT
                      ____________________________________________________________
consensus             CCTATAAAGTGCGGTAGCACTATCCACAATCATAAGAGCAAACCTGGTTTCTACCATCAT
 
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rJMSF024L03-          TGAGGCTGCCTCGAGCAAAAGCCTTGACTGATGATCAGTGTTATAAGCTCGAGCATATGC
                      ____________________________________________________________
consensus             TGAGGCTGCCTCGAGCAAAAGCCTTGACTGATGATCAGTGTTATAAGCTCGAGCATATGC
 
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rJMSF024L03-          CACATTTTCTAGAACATCTGCTCCATTCAACCCAAACCTGTCTGCAATCTGCAAGAGTCT
JMSF024L03+                                                            TGCAAGAGTCT
                      ____________________________________________________________
consensus             CACATTTTCTAGAACATCTGCTCCATTCAACCCAAACCTGTCTGCAATCTGCAAGAGTCT
 
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rJMSF024L03-          TTGTGGTCTGAAAGTGCCCTCAGCATCAATATACATTGCCTTCCCTTCACCGCCCCCTTG
JMSF024L03+           TTGTGGTCTGAAAGTGCCNTCAGCATCAATATACATTGCCTTCCCTTCACCGCCCCCTTG
                      ____________________________________________________________
consensus             TTGTGGTCTGAAAGTGCCCTCAGCATCAATATACATTGCCTTCCCTTCACCGCCCCCTTG
 
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rJMSF024L03-          ATCTAAGGGAAGTTGGCAAGTAACACATAATGTATGACAAAGCTGAGTCT          
JMSF024L03+           ATCTAAGGGAAGTTGGCAAGTAACACATAATGTATGACAAAGCTGAGTCTTCCCAGAGCG
                      ____________________________________________________________
consensus             ATCTAAGGGAAGTTGGCAAGTAACACATAATGTATGACAAAGCTGAGTCTTCCCAGAGCG
 
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JMSF024L03+           GAATTCGCCATAAATTTCAGTGATAGATCCCGTTTCAATTCCCCCTTCCAAGACTTTGTC
                      ____________________________________________________________
consensus             GAATTCGCCATAAATTTCAGTGATAGATCCCGTTTCAATTCCCCCTTCCAAGACTTTGTC
 
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JMSF024L03+           AAGCTCTTTTGATCCAGATGTTATTTGAATGATTTCAAGCCTCTGTGCATGGAGTTGGCT
                      ____________________________________________________________
consensus             AAGCTCTTTTGATCCAGATGTTATTTGAATGATTTCAAGCCTCTGTGCATGGAGTTGGCT
 
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JMSF024L03+           GGCACTAGTAAAACCCAGAGGCACCAATTTTGAAGCTGCCTCTATGATTTTGTCAACTTT
                      ____________________________________________________________
consensus             GGCACTAGTAAAACCCAGAGGCACCAATTTTGAAGCTGCCTCTATGATTTTGTCAACTTT
 
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JMSF024L03+           AGCTTCACTGATCCCTTTTATTTGCAGAAGGTCTTTTCTAGGAGAGTACACAACTGATTC
                      ____________________________________________________________
consensus             AGCTTCACTGATCCCTTTTATTTGCAGAAGGTCTTTTCTAGGAGAGTACACAACTGATTC
 
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JMSF024L03+           TACAGTACATAGACCCGCATCCTTAAGTTTCTTTACGTCAATGGCAGAGATTCCAGATTC
                      ____________________________________________________________
consensus             TACAGTACATAGACCCGCATCCTTAAGTTTCTTTACGTCAATGGCAGAGATTCCAGATTC
 
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JMSF024L03+           CTGGAGTTGCTCAATCGGGAAAGGGCCGTGTTGAATTTCCTCGACCTCATCTTGCTGCCG
                      ____________________________________________________________
consensus             CTGGAGTTGCTCAATCGGGAAAGGGCCGTGTTGAATTTCCTCGACCTCATCTTGCTGCCG
 
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JMSF024L03+           TTCTTGCACACTTTTCTGCTGGTTTCTGTGCTGCTGCTCCATTGTTGCTCCAAACTAGTG
                      ____________________________________________________________
consensus             TTCTTGCACACTTTTCTGCTGGTTTCTGTGCTGCTGCTCCATTGTTGCTCCAAACTAGTG
 
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JMSF024L03+           TGGATGTATTTCGCTTTCGCACGGAGAAAGACGAAAGGGAAAAGATTTTAAAAGCGTTTT
                      ____________________________________________________________
consensus             TGGATGTATTTCGCTTTCGCACGGAGAAAGACGAAAGGGAAAAGATTTTAAAAGCGTTTT
 
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JMSF024L03+           AGGCGCCAAAAATTAGAGCGTCGTGGGAGGGATCAAAATGAACCTCTAGCGTAATGGGCC
                      ____________________________________________________________
consensus             AGGCGCCAAAAATTAGAGCGTCGTGGGAGGGATCAAAATGAACCTCTAGCGTAATGGGCC