Contig 013373:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS017A07Sequence620013373 (3)ref|XP_009627739.1|7e-06PREDICTED: transcription factor bHLH13-like [Nicotiana tomentosiformis]
JMFS082B02Sequence636013373 (3)ref|XP_009627739.1|1e-18PREDICTED: transcription factor bHLH13-like [Nicotiana tomentosiformis]
JMSF024F14Sequence699013373 (3)ref|XP_009627739.1|4e-17PREDICTED: transcription factor bHLH13-like [Nicotiana tomentosiformis]735007117 (3)ref|XP_006491293.1|8e-62PREDICTED: transcription factor bHLH13-like [Citrus sinensis] gb|KDO86499.1| hyp

Alignment

This contig is upended


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JMFS082B02+                      GAAAGCTTTGTCTGTAAATTCTCATCGTTTCCCACCGCCATTAACGAGC
JMSF024F14+                                TCTGTAAATTCTCATCGTTTCCCACCGCCATTAACGAGC
                      ____________________________________________________________
consensus                        GAAAGCTTTGTCTGTAAATTCTCATCGTTTCCCACCGCCATTAACGAGC
 
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JMFS082B02+           ACTGAGCCGAAACCGAGCTCGAAATCAAATAATCAAAAGCCTTAGTCCCCAACACCGCCG
JMFS017A07+                              CGAAATCAAATAATCAAAAGCCTTAGTCCCCAACACCGCCG
JMSF024F14+           ACTGAGCCGAAACCGAGCTCGAAATCAAATAATCAAAAGCCTTAGTCCCCAACACCGCCG
                      ____________________________________________________________
consensus             ACTGAGCCGAAACCGAGCTCGAAATCAAATAATCAAAAGCCTTAGTCCCCAACACCGCCG
 
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JMFS082B02+           CCACCATGGCTTTGTCCTCGTCACTCCACGACAAGTTCACCATAGCCATCTTTATTAATT
JMFS017A07+           CCACCATGGCTTTGTCCTCGTCACTCCACGACAAGTTCACCATAGCCATCTTTATTAATT
JMSF024F14+           CCACCATGGCTTTGTCCTCGTCACTCCACGACAAGTTCACCATAGCCATCTTTATTAATT
                      ____________________________________________________________
consensus             CCACCATGGCTTTGTCCTCGTCACTCCACGACAAGTTCACCATAGCCATCTTTATTAATT
 
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JMFS082B02+           TAAGCCCCCACCCGCAAAACACCTCTAACTCTTCACTCCAAATATCCAATTTCTAGATAG
JMFS017A07+           TAAGCCCCCACCCGCAAAACACCTCTAACTCTTCACTCCAAATATCCAATTTCTAGATAG
JMSF024F14+           TAAGCCCCCACCCGCAAAACACCTCTAACTCTTCACTCCAAATATCCAATTTCTAGATAG
                      ____________________________________________________________
consensus             TAAGCCCCCACCCGCAAAACACCTCTAACTCTTCACTCCAAATATCCAATTTCTAGATAG
 
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JMFS082B02+           CCCAGACACACAATAAAAAGACGACGAAATGAATAAAAGCGACGAAATACTATGCCTATT
JMFS017A07+           CCCAGACACACAATAAAAAGACGACGAAATGAATAAAAGCGACGAAATACTATGCCTATT
JMSF024F14+           CCCAGACACACAATAAAAAGACGACGAAATGAATAAAAGCGACGAAATACTATGCCTATT
                      ____________________________________________________________
consensus             CCCAGACACACAATAAAAAGACGACGAAATGAATAAAAGCGACGAAATACTATGCCTATT
 
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JMFS082B02+           TCCCCAAAGCTCCAAACCTTCACATTAAGAAACCATAGACACACAAATCTCGGCTTTCAA
JMFS017A07+           TCCCCAAAGCTCCAAACCTTCACATTAAGAAACCATAGACACACAAATCTCGGCTTTCAA
JMSF024F14+           TCCCCAAAGCTCCAAACCTTCACATTAAGAAACCATAGACACACAAATCTCGGCTTTCAA
                      ____________________________________________________________
consensus             TCCCCAAAGCTCCAAACCTTCACATTAAGAAACCATAGACACACAAATCTCGGCTTTCAA
 
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JMFS082B02+           CCACATAATTGATCTTCTTCTTCAGAAATATACAATCCGTCATAGCTCTATTTTCAGATC
JMFS017A07+           CCACATAATTGATCTTCTTCTTCAGAAATATACAATCCGTCATAGCTCTATTTTCAGATC
JMSF024F14+           CCACATAATTGATCTTCTTCTTCAGAAATATACAATCCGTCATAGCTCTATTTTCAGATC
                      ____________________________________________________________
consensus             CCACATAATTGATCTTCTTCTTCAGAAATATACAATCCGTCATAGCTCTATTTTCAGATC
 
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JMFS082B02+           TCATAATCGAAAGTTTTTTACATAAATTAGAATAGAACAAAAAAATAGACACAAACTTTT
JMFS017A07+           TCATAATCGAAAGTTTTTTACATAAATTAGAATAGAACAAAAAAATAGACACAAACTTTT
JMSF024F14+           TCATAATCGAAAGTTTTTTACATAAATTAGAATAGAACAAAAAAATAGACACAAACTTTT
                      ____________________________________________________________
consensus             TCATAATCGAAAGTTTTTTACATAAATTAGAATAGAACAAAAAAATAGACACAAACTTTT
 
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JMFS082B02+           CATGTACCAATGCATATATAAGAATACAAATCAAGGAATTGAAGAAGAAAATACACACCG
JMFS017A07+           CATGTACCAATGCATATATAAGAATACAAATCAAGGAATTGAAGAAGAAAATACACACCG
JMSF024F14+           CATGTACCAATGCATATATAAGAATACAAATCAAGGAATTGAAGAAGAAAATACACACCG
                      ____________________________________________________________
consensus             CATGTACCAATGCATATATAAGAATACAAATCAAGGAATTGAAGAAGAAAATACACACCG
 
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JMFS082B02+           GTCAAGATGCAGAGCAAACAACTTGCAGTAATTCTCTTCGTAGATTGGGAATTCTATGCT
JMFS017A07+           GTCAAGATGCAGAGCAAACAACTTGCAGTAATTCTCTTCGTAGATTGGGAATTCTATGCT
JMSF024F14+           GTCAAGATGCAGAGCAAACAACTTGCAGTAATTCTCTTCGTAGATTGGGAATTCTATGCT
                      ____________________________________________________________
consensus             GTCAAGATGCAGAGCAAACAACTTGCAGTAATTCTCTTCGTAGATTGGGAATTCTATGCT
 
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JMFS082B02+           GGAAATTTTATTTTGTTTTCAATTTTTTTCCTGGAAATTTTATCTTT             
JMFS017A07+           GGAAATTTTATTTTGTTTTCAATTTTTTTCCTGGAAATTTTATCTTTTCTCCTTCAAAGG
JMSF024F14+           GGAAATTTTATTTTGTTTTCAATTTTTTTCCTGGAAATTTTATCTTTTCTCCTTCAAAGG
                      ____________________________________________________________
consensus             GGAAATTTTATTTTGTTTTCAATTTTTTTCCTGGAAATTTTATCTTTTCTCCTTCAAAGG
 
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JMFS017A07+           GCAAAGGGAGAAGAGAAAGAAGAAAGAGAGAGAACGAGA                     
JMSF024F14+           GCAAAGGGAGAAGAGAAAGAAGAAAGAGAGAGAACGAGAGAGATATAGAGCGCGTGTACC
                      ____________________________________________________________
consensus             GCAAAGGGAGAAGAGAAAGAAGAAAGAGAGAGAACGAGAGAGATATAGAGCGCGTGTACC