Contig 013366:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034L20Sequence518013366 (3)ref|XP_006349736.1|1e-50PREDICTED: guanylate-binding protein 4-like [Solanum tuberosum]
JMSF023F21Sequence647013366 (3)ref|XP_006349736.1|4e-67PREDICTED: guanylate-binding protein 4-like [Solanum tuberosum]787008526 (2)emb|CDP03685.1|5e-103unnamed protein product [Coffea canephora]
JMSF035F19Sequence702013366 (3)ref|XP_007050442.1|8e-104Guanylate-binding family protein isoform 3 [Theobroma cacao] gb|EOX94599.1| Guan706008526 (2)emb|CDP03685.1|2e-83unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF035F19+                                                     TCTTCCATAGAACTTTTC
                      ____________________________________________________________
consensus                                                       TCTTCCATAGAACTTTTC
 
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JMSF035F19+           AGCAAGCTCAACTGCAAATGACAACCTAGAAATGTCTGCTTCACGGATCGTCTCAGGCAG
                      ____________________________________________________________
consensus             AGCAAGCTCAACTGCAAATGACAACCTAGAAATGTCTGCTTCACGGATCGTCTCAGGCAG
 
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JMSF035F19+           ATTATAAATAAGAACAGAACTTAAAACTGTTGCCAGGGCAAAAATCCTATCATCATATAC
                      ____________________________________________________________
consensus             ATTATAAATAAGAACAGAACTTAAAACTGTTGCCAGGGCAAAAATCCTATCATCATATAC
 
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JMSF035F19+           ATTTGACTTTCCAACACTTTCAAATCCTTCCGTGTCAAGGTAGAAAACAGAAGTTTTTAC
JMFF034L20+                                           TGTCAAGGTAGAAAACAGAAGTTTTTAC
JMSF023F21+                       AACACTTTCAAATCCTTCCGTGTCAAGGTAGAAAACAGAAGTTTTTAC
                      ____________________________________________________________
consensus             ATTTGACTTTCCAACACTTTCAAATCCTTCCGTGTCAAGGTAGAAAACAGAAGTTTTTAC
 
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JMSF035F19+           TCCATCAATATCCAACATTCTTGGACTTCCCCACA-CCCATATTCCTTTGGTCTTTGTAT
JMFF034L20+           TCCATCAATATCCAACATTCTTGGACTTCCCCACACCCCATATTCCTTTGGTCTTTGTAT
JMSF023F21+           TCCATCAATATCCAACATTCTTGGACTTCCCCACA-CCCATATTCCTTTGGTCTTTGTAT
                      ____________________________________________________________
consensus             TCCATCAATATCCAACATTCTTGGACTTCCCCACA-CCCATATTCCTTTGGTCTTTGTAT
 
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JMSF035F19+           CACGCATATGCCCAACCCCAAAACCTTCATCACAAGAAAGGGAAAGAAGCTGGTTCAAAA
JMFF034L20+           CACGCATATGCCCAACCCCAAAACCTTCATCACAAGAAAGGGAAAGAAGCTGGTTCAAAA
JMSF023F21+           CACGCATATGCCCAACCCCAAAACCTTCATCACAAGAAAGGGAAAGAAGCTGGTTCAAAA
                      ____________________________________________________________
consensus             CACGCATATGCCCAACCCCAAAACCTTCATCACAAGAAAGGGAAAGAAGCTGGTTCAAAA
 
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JMSF035F19+           GAAATGATTTTCCAGAACGATATGGACCAATCACAGCAACAGCTGCAATGGGGGTTGTTA
JMFF034L20+           GAAATGATTTTCCAGAACGATATGGACCAATCACAGCAACAGCTGCAATGGGGGTTGTTA
JMSF023F21+           GAAATGATTTTCCAGAACGATATGGACCAATCACAGCAACAGCTGCAATGGGGGTTGTTA
                      ____________________________________________________________
consensus             GAAATGATTTTCCAGAACGATATGGACCAATCACAGCAACAGCTGCAATGGGGGTTGTTA
 
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JMSF035F19+           TTTTCTCAATGGCCTCCAACCCTTCTTTTGAAAGGCGAAGTTTTGTGTGACCGGGATCGG
JMFF034L20+           TTTTCTCAATGGCCTCCAACCCTTCTTTTGAAAGGCGAAGTTTTGTGTGACCGGGATCGG
JMSF023F21+           TTTTCTCAATGGCCTCCAACCCTTCTTTTGAAAGGCGAAGTTTTGTGTGACCGGGATCGG
                      ____________________________________________________________
consensus             TTTTCTCAATGGCCTCCAACCCTTCTTTTGAAAGGCGAAGTTTTGTGTGACCGGGATCGG
 
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JMSF035F19+           GCTCTACAATAGGAAATGCTTGATTAAAATTGGTGTCAATGGAGAAGGACCCAGATGCGA
JMFF034L20+           GCTCTACAATAGGAAACGCTTGATTAAAATTGGTGTCAATGGAGAAGGACCCAGATGCGA
JMSF023F21+           GCTCTACAATAGGAAACGCTTGATTAAAATTGGTGTCAATGGAGAAGGACCCAGATGCGA
                      ____________________________________________________________
consensus             GCTCTACAATAGGAAACGCTTGATTAAAATTGGTGTCAATGGAGAAGGACCCAGATGCGA
 
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JMSF035F19+           GAAGGCAAAGAAAAATGGAGCATAGAATAATCCGACCCGAAATCTTCATCCTTGATCTAG
JMFF034L20+           GAAGGCAAAGAAAAATGGAGCATAGAATAATCCGACCCGAAATCTTCATCCTTGATCTAG
JMSF023F21+           GAAGGCAAAGAAAAATGGAGCATAGAATAATCCGACCCGAAATCTTCATCCTTGATCTAG
                      ____________________________________________________________
consensus             GAAGGCAAAGAAAAATGGAGCATAGAATAATCCGACCCGAAATCTTCATCCTTGATCTAG
 
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JMSF035F19+           GAAGGTTGTAAAGCTAGAACATAGAAGTGAGCGTGGAGAGTATAATAGGCAAAGAAACCA
JMFF034L20+           GAAGGTTGTAAAGCTAGAACATAGAAGTGAGCGTGGAGAGTATAATAGGCAAAGAAACCA
JMSF023F21+           GAAGGTTGTAAAGCTAGAACATAGAAGTGAGCGTGGAGAGTATAATAGGCAAAGAAACCA
                      ____________________________________________________________
consensus             GAAGGTTGTAAAGCTAGAACATAGAAGTGAGCGTGGAGAGTATAATAGGCAAAGAAACCA
 
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JMSF035F19+           TTTAAACGACAAGAGGAGGAATGAAGAGAGAAAACAATAAACCGCTTTTGGAATGTGCGA
JMFF034L20+           TTTAAACGACAAGAGGAGGAATGAAGAGAGAAAACAATAAACCGCTTTTGGAATGTGCGA
JMSF023F21+           TTTAAACGACAAGAGGAGGAATGAAGAGAGAAAACAATAAACCGCTTTTGGAATGTGCGA
                      ____________________________________________________________
consensus             TTTAAACGACAAGAGGAGGAATGAAGAGAGAAAACAATAAACCGCTTTTGGAATGTGCGA
 
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JMSF035F19+           AGAGAACAGTGGGATCTAAATTC                                     
JMFF034L20+           AGAGAACAGT                                                  
JMSF023F21+           AGAGAACAGTGGGATCTAAATTCTAAAGCCTAAACTGAAGAAAGAAAGAAAATAGGAAGA
                      ____________________________________________________________
consensus             AGAGAACAGTGGGATCTAAATTCTAAAGCCTAAACTGAAGAAAGAAAGAAAATAGGAAGA
 
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JMSF023F21+           AGAAGCCATGACCGTGACCGAGGGTGCAGGTTAAGGATCGCGGACCACTAGCGAGAGCCC
                      ____________________________________________________________
consensus             AGAAGCCATGACCGTGACCGAGGGTGCAGGTTAAGGATCGCGGACCACTAGCGAGAGCCC