| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN037B06 | Sequence | 554 | 013365 (4) | ref|XP_002318714.1| | 6e-102 | hypothetical protein POPTR_0012s09720g [Populus trichocarpa] gb|EEE96934.1| hypo | |||||
| JMFN044K14 | Sequence | 613 | 013365 (4) | ref|XP_002318714.1| | 3e-123 | hypothetical protein POPTR_0012s09720g [Populus trichocarpa] gb|EEE96934.1| hypo | |||||
| JMSF023E23 | Sequence | 631 | 013365 (4) | ref|XP_002318714.1| | 1e-124 | hypothetical protein POPTR_0012s09720g [Populus trichocarpa] gb|EEE96934.1| hypo | 695 | 023529 | ref|XP_008392834.1| | 5e-05 | PREDICTED: adenylate kinase B-like [Malus domestica] ref|XP_008351746.1| PREDICT |
| JMSF024N08 | Sequence | 648 | 013365 (4) | ref|XP_002318714.1| | 2e-131 | hypothetical protein POPTR_0012s09720g [Populus trichocarpa] gb|EEE96934.1| hypo | 738 | 021466 | ref|XP_006342464.1| | 4e-70 | PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFN044K14+ TGAGAGGTTCTCCAGTGACATCATCAACT
JMSF024N08+ AACAGCAGCAGTATCATCTTTACGTTGAATGAGAGGTTCTCCAGTGACATCATCAACT
JMSF023E23+ TGAGAGGTTCTCCAGTGACATCATCAACT
____________________________________________________________
consensus AACAGCAGCAGTATCATCTTTACGTTGAATGAGAGGTTCTCCAGTGACATCATCAACT
. : . : . : . : . : . :
JMFN044K14+ CCAGAAACTTTAGGGGGTGCAAACTTTGTGTGGTAGGTTCTTCCACTGNAGGGGTGGATC
JMFN037B06+ TGCAAACTTTGTGTGGTAGGTTCTTCCACTTGAGGGG-GGATC
JMSF024N08+ CCAGAAACTTTAGGGGGTGCAAACTTTGTGTGGTAGGTTCTTCCACTTGAGGGGTGGATC
JMSF023E23+ CCAGAAACTTTAGGGGGTGCAAACTTTGTGTGGTAGGTTCTTCCACTTGAGGGGTGGATC
____________________________________________________________
consensus CCAGAAACTTTAGGGGGTGCAAACTTTGTGTGGTAGGTTCTTCCACTTGAGGGGTGGATC
. : . : . : . : . : . :
JMFN044K14+ CAGCGACCAGTAATCCTCTCTTCCAAGATAGCATCATCAATTGCAAAATTCAACACCTTA
JMFN037B06+ CAGCGACCAGTAATCCTCTCTTCCAAGATAGCATCATCAATTGCAAAATTCAACACCTTA
JMSF024N08+ CAGCGACCAGTAATCCTCTCTTCCAAGATAGCATCATCAATTGCAAAATTCAACACCTTA
JMSF023E23+ CAGCGACCAGTAATCCTCTCTTCCAAGATAGCATCATCAATTGCAAAATTCAACACCTTA
____________________________________________________________
consensus CAGCGACCAGTAATCCTCTCTTCCAAGATAGCATCATCAATTGCAAAATTCAACACCTTA
. : . : . : . : . : . :
JMFN044K14+ TCCACCTTGGCACCCTGCTTCTGAAGCATTTCATCTAGCTTCTCTGCTTGAACCACTGTC
JMFN037B06+ TCCACCTTGGCACCCTGCTTCTGAAGCATTTCATCTAGCTTCTCTGCTTGAACCACTGTC
JMSF024N08+ TCCACCTTGGCACCCTGCTTCTGAAGCATTTCATCTAGCTTCTCTGCTTGAACCACTGTC
JMSF023E23+ TCCACCTTGGCACCCTGCTTCTGAAGCATTTCATCTAGCTTCTCTGCTTGAACCACTGTC
____________________________________________________________
consensus TCCACCTTGGCACCCTGCTTCTGAAGCATTTCATCTAGCTTCTCTGCTTGAACCACTGTC
. : . : . : . : . : . :
JMFN044K14+ CTGGGAAACCCATCAAGAATGAACCCCTTTTGACATGAGGGTTTCTTCATAGCTTCATCA
JMFN037B06+ CTGGGAAACCCATCAAGAATGAACCCCTTTTGACATGAGGGTTTCTTCATAGCTTCATCA
JMSF024N08+ CTGGGAAACCCATCAAGAATGAACCCCTTTTGACATGAGGGTTTCTTCATAGCTTCATCA
JMSF023E23+ CTGGGAAACCCATCAAGAATGAACCCCTTTTGACATGAGGGTTTCTTCATAGCTTCATCA
____________________________________________________________
consensus CTGGGAAACCCATCAAGAATGAACCCCTTTTGACATGAGGGTTTCTTCATAGCTTCATCA
. : . : . : . : . : . :
JMFN044K14+ ATGATACCAACAACTAAGTCATCAGAGACTAGTTCACCCTTGTCCATGGCTTCCTTGGCC
JMFN037B06+ ATGATACCAACAACTAAGTCATCAGAGACTAGTTCACCCTTGTCCATGGCTTCCTTGGCC
JMSF024N08+ ATGATACCAACAACTAAGTCATCAGAGACTAGTTCACCCTTGTCCATGGCTTCCTTGGCC
JMSF023E23+ ATGATACCAACAACTAAGTCATCAGAGACTAGTTCACCCTTGTCCATGGCTTCCTTGGCC
____________________________________________________________
consensus ATGATACCAACAACTAAGTCATCAGAGACTAGTTCACCCTTGTCCATGGCTTCCTTGGCC
. : . : . : . : . : . :
JMFN044K14+ TTGATGCCAAGAGGAGTTTTGGCAGCAACAGCAGCTCTCAACATGTCACCAGTGGCCAAA
JMFN037B06+ TTGATGCCAAGAGGAGTTTTGGCAGCAACAGCAGCTCTCAACATGTCACCAGTGGCCAAA
JMSF024N08+ TTGATGCCAAGAGGAGTTTTGGCAGCAACAGCAGCTCTCAACATGTCACCAGTGGCCAAA
JMSF023E23+ TTGATGCCAAGAGGAGTTTTGGCAGCAACAGCAGCTCTCAACATGTCACCAGTGGCCAAA
____________________________________________________________
consensus TTGATGCCAAGAGGAGTTTTGGCAGCAACAGCAGCTCTCAACATGTCACCAGTGGCCAAA
. : . : . : . : . : . :
JMFN044K14+ TGGCATAAACAGTAGTCATCCTTAATGATGGGGGACTGTGTACCTTTCCCAGATCCAGGT
JMFN037B06+ TGGCATAAACAGTAGTCATCCTTAATGATGGGGGACTGTGTACCTTTCCCAGATCCAGGT
JMSF024N08+ TGGCATAAACAGTAGTCATCCTTAATGATGGGGGACTGTGTACCTTTCCCAGATCCAGGT
JMSF023E23+ TGGCATAAACAGTAGTCATCCTTAATGATGGGGGACTGTGTACCTTTCCCAGATCCAGGT
____________________________________________________________
consensus TGGCATAAACAGTAGTCATCCTTAATGATGGGGGACTGTGTACCTTTCCCAGATCCAGGT
. : . : . : . : . : . :
JMFN044K14+ GGACCGATGAGAATGAGGCGCTTGTCAGGCTTGGAGGAACACTTGAGCCGGCGGAGGAGC
JMFN037B06+ GGACCGATGAGAGTGAGGCGCTTGTCAGGCTTGGAGGAACACTTGAGCCGGCGGAGGAGC
JMSF024N08+ GGACCGATGAGAATGAGGCGCTTGTCAGGCTTGGAGGAACACTTGAGCCGGCGGAGGAGC
JMSF023E23+ GGACCGATGAGAATGAGGCGCTTGTCAGGCTTGGAGGAACACTTGAGCCGGCGGAGGAGC
____________________________________________________________
consensus GGACCGATGAGAATGAGGCGCTTGTCAGGCTTGGAGGAACACTTGAGCCGGCGGAGGAGC
. : . : . : . : . : . :
JMFN044K14+ TCCGTCATGATGGACTCAGTCGGGACGTCCTCCAGCGACACCGTCGAAGCTGCCATGTCT
JMFN037B06+ TCCGTCATGATGGACTCAGTCGGGACGTCCTCCAGCGACACCGTCGAAGCTGCCATGTCT
JMSF024N08+ TCCGTCATGATGGACTCAGTCGGGACGTCCTCCAGCGACACCGTCGAAGCTGCCATGTCT
JMSF023E23+ TCCGTCATGATGGACTCAGTCGGGACGTCCTCCAGCGACACCGTCGAAGCTGCCATGTCT
____________________________________________________________
consensus TCCGTCATGATGGACTCAGTCGGGACGTCCTCCAGCGACACCGTCGAAGCTGCCATGTCT
. : . : . : . : . : . :
JMFN044K14+ CCGCCGCTTGGTGTTGTTAGGGGTTCGGTGTTTCCGATGGTTTT
JMFN037B06+ CCGCCGCTTGGTGTTGTTAGGGGTTCGGTGTT
JMSF024N08+ CCGCCGCTTGGTGTTGTTAGGGGTTCGGTGTTTCCGATGGTTTT
JMSF023E23+ CCGCCGCTTGGTGTTGTTAGGGGTTCGGTGTTTCCGATGGTTTTGACGCAAACGAGAACC
____________________________________________________________
consensus CCGCCGCTTGGTGTTGTTAGGGGTTCGGTGTTTCCGATGGTTTTGACGCAAACGAGAACC