Contig 013364:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016L15Sequence512013364 (3)ref|XP_009779634.1|2e-26PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Nicotiana sylvestr787008518 (3)ref|XP_004237858.1|4e-73PREDICTED: alkylated DNA repair protein alkB homolog 8 [Solanum lycopersicum]
JMSF021N12Sequence652013364 (3)ref|XP_009779634.1|2e-59PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Nicotiana sylvestr742008518 (3)ref|XP_004237858.1|7e-59PREDICTED: alkylated DNA repair protein alkB homolog 8 [Solanum lycopersicum]
JMSF023C07Sequence655013364 (3)ref|XP_009779634.1|3e-60PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Nicotiana sylvestr810008518 (3)ref|XP_004237858.1|2e-78PREDICTED: alkylated DNA repair protein alkB homolog 8 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF021N12+                 TCTGCAACTAACACCTCGTGTCCCCTATCCGCACATATATTGATAAGTGGAGCA
JMSF023C07+                ATCTGCAACTAACACCTCGTGTCCCCTATCCGCACATATATTGATAAGTGGAGCA
                      ____________________________________________________________
consensus                  ATCTGCAACTAACACCTCGTGTCCCCTATCCGCACATATATTGATAAGTGGAGCA
 
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JMSF021N12+           CTAATATCACATCCAATAAATAAACAATTTGGATTCAACCCTAAATATTTGCCATTTCCA
JMSF023C07+           CTAATATCACATCCAATAAATAAACAATTTGGATTCAACCCTAAATATTTGCCATTTCCA
                      ____________________________________________________________
consensus             CTAATATCACATCCAATAAATAAACAATTTGGATTCAACCCTAAATATTTGCCATTTCCA
 
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JMSF021N12+           CAGCCCGCATCCAAAATAAGTGAACCCACAGGCAATGAATTCAAGAAAGCAGAAACTTTC
JMSF016L15+                                      ACAGGCAATGAATTCAAGAAAGCAGAAACTTTC
JMSF023C07+           CAGCCCGCATCCAAAATAAGTGAACCCACAGGCAATGAATTCAAGAAAGCAGAAACTTTC
                      ____________________________________________________________
consensus             CAGCCCGCATCCAAAATAAGTGAACCCACAGGCAATGAATTCAAGAAAGCAGAAACTTTC
 
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JMSF021N12+           GGCCACTTGGCAAACCTAGTGGAACTGAAATGGGGAGCAATTGCATCATAAACTCGATGA
JMSF016L15+           GGCCACTNGGCAAACCTAGTGGAACTGAAATGGGGAGCAATTGCATCATAAACTCGATGA
JMSF023C07+           GGCCACTTGGCAAACCTAGTGGAACTGAAATGGGGAGCAATTGCATCATAAACTCGATGA
                      ____________________________________________________________
consensus             GGCCACTTGGCAAACCTAGTGGAACTGAAATGGGGAGCAATTGCATCATAAACTCGATGA
 
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JMSF021N12+           ACATACTTTTTTTCAATTTCCGGGGTCGATTGAACATTTGAGGAAGTATCTTTCTTATCC
JMSF016L15+           ACATACTTTTTTTCAATTTCCGGGGTCGATTGAACATTTGAGGAAGTATCTTTCTTATCC
JMSF023C07+           ACATACTTTTTTTCAATTTCCGGGGTCGATTGAACATTTGAGGAAGTATCTTTCTTATCC
                      ____________________________________________________________
consensus             ACATACTTTTTTTCAATTTCCGGGGTCGATTGAACATTTGAGGAAGTATCTTTCTTATCC
 
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JMSF021N12+           GAGCTCACAGAAACTGGTCGTAGCACACAAGACTCTCTGTCAGATTCAGAAGCATACAAT
JMSF016L15+           GAGCTCACAGAAACTGGTCGTAGCACACAAGACTCTCTGTCAGATTCAGAAGCATACAAT
JMSF023C07+           GAGCTCACAGAAACTGGTCGTAGCACACAAGACTCTCTGTCAGATTCAGAAGCATACAAT
                      ____________________________________________________________
consensus             GAGCTCACAGAAACTGGTCGTAGCACACAAGACTCTCTGTCAGATTCAGAAGCATACAAT
 
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JMSF021N12+           CTAGAACCACCATCAATTCCAACTTCTCTCATTGTTCTAAAACAGCCTTGATTGCCAATG
JMSF016L15+           CTAGAACCACCATCAATTCCAACTTCTCTCATTGTTCTAAAACAGCCTTGATTGCCAATG
JMSF023C07+           CTAGAACCACCATCAATTCCAACTTCTCTCATTGTTCTAAAACAGCCTTGATTGCCAATG
                      ____________________________________________________________
consensus             CTAGAACCACCATCAATTCCAACTTCTCTCATTGTTCTAAAACAGCCTTGATTGCCAATG
 
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JMSF021N12+           GTATTATTACCAACAATGATAGGCCGCCCAATGTCACAAAACCCTCCTCTCGAATACAAT
JMSF016L15+           GTATTATTACCAACAATGATAGGCCGCCCAATGTCACAAAACCCTCCTCTCGAATACAAT
JMSF023C07+           GTATTATTACCAACAATGATAGGCCGCCCAATGTCACAAAACCCTCCTCTCGAATACAAT
                      ____________________________________________________________
consensus             GTATTATTACCAACAATGATAGGCCGCCCAATGTCACAAAACCCTCCTCTCGAATACAAT
 
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JMSF021N12+           GCTATAGATCGTAAAGCACCTATAAGCATAACAACTATACAAGTATCTCCATATAGAGAC
JMSF016L15+           GCTATAGATCGTAAAGCACCTATAAGCATAACAACTATACAAGTATCTCCATATAGAGAC
JMSF023C07+           GCTATAGATCGTAAAGCACCTATAAGCATAACAACTATACAAGTATCTCCATATAGAGAC
                      ____________________________________________________________
consensus             GCTATAGATCGTAAAGCACCTATAAGCATAACAACTATACAAGTATCTCCATATAGAGAC
 
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JMSF021N12+           AGTCTCAGGCTTTCAGCGGTCCTTCACTACGA-TTTGAGGCAAGTGGGGTCATCATCCAC
JMSF016L15+           AGTCTCAGGCTTTCAGCGGTCCTTCACTACGATTTTGAGGCAAGTGGGGTCATCATCCAC
JMSF023C07+           AGTCTCAGGCTTTCAGCGGTCCTTCACTACGATTTTGAGGCAAGTGGGGTCATCATCCAC
                      ____________________________________________________________
consensus             AGTCTCAGGCTTTCAGCGGTCCTTCACTACGATTTTGAGGCAAGTGGGGTCATCATCCAC
 
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JMSF021N12+           TACTAAACCTGTTTCTGGGAGTTACTCCGTAGATCAGTGAGAGACATTATAGGGACC   
JMSF016L15+           TACTAAACCTGTTTCTGGGAGTTACTCCGTAGATCAGTGAGAGACATTATAGGGACC   
JMSF023C07+           TACTAAACCTGTTTCTGGGAGTTACTCCGTAGATCAGTGAGAGACATTATAGGGACCTCT
                      ____________________________________________________________
consensus             TACTAAACCTGTTTCTGGGAGTTACTCCGTAGATCAGTGAGAGACATTATAGGGACCTCT