| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019F08 | Sequence | 601 | 013358 (8) | ref|XP_009629363.1| | 1e-96 | PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana tomentosiformis] | 733 | 013358 (8) | ref|XP_007049532.1| | 7e-67 | FRIGIDA-like protein isoform 1 [Theobroma cacao] ref|XP_007049533.1| FRIGIDA-lik |
| JMFF046N05 | Sequence | 580 | 013358 (8) | ref|XP_009629363.1| | 9e-96 | PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana tomentosiformis] | 527 | 013358 (8) | ref|XP_009767897.1| | 3e-45 | PREDICTED: FRIGIDA-like protein 3 isoform X1 [Nicotiana sylvestris] ref|XP_00976 |
| JMFN013B22 | Sequence | 555 | 013358 (8) | ref|XP_009629363.1| | 5e-26 | PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana tomentosiformis] | |||||
| JMFN020I19 | Sequence | 586 | 013358 (8) | ref|XP_009629363.1| | 4e-60 | PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana tomentosiformis] | |||||
| JMSF022K17 | Sequence | 641 | 013358 (8) | gb|ABK42079.1| | 7e-117 | hypothetical protein [Capsicum annuum] | 717 | 013358 (8) | ref|XP_009629363.1| | 7e-97 | PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFN013B22+ AAAGAAAAAATA
____________________________________________________________
consensus AAAGAAAAAATA
. : . : . : . : . : . :
JMFN013B22+ ATTAATTTGACCAACAAATAATAGGTAGGATTCGACAGGATAGATAAAATGATTTGGTCC
____________________________________________________________
consensus ATTAATTTGACCAACAAATAATAGGTAGGATTCGACAGGATAGATAAAATGATTTGGTCC
. : . : . : . : . : . :
JMFN013B22+ CACAAGAAACAACATAGAGACTATGGGGTAAAACAGCAAAACAAAAGAAAACACTAGAGA
____________________________________________________________
consensus CACAAGAAACAACATAGAGACTATGGGGTAAAACAGCAAAACAAAAGAAAACACTAGAGA
. : . : . : . : . : . :
JMFN013B22+ GCCAAAATTATACAGAAATATAAACATGAACGGTGGTGCATATTAAAACATTACAGCATT
rJMFF046N05- TTATACAGAAATATAAACATGAACGGTGGTGCATATTAAAACATTACAGCATT
JMFN020I19+ TTATACAGAAATATAAACATGAACGGTGGTGCATATTAAAACATTACAGCATT
rJMFF019F08- TGAACGGTGGTGCATATTAAAACATTACAGCATT
rJMSF022K17- ACATTACAGCATT
____________________________________________________________
consensus GCCAAAATTATACAGAAATATAAACATGAACGGTGGTGCATATTAAAACATTACAGCATT
. : . : . : . : . : . :
JMFN013B22+ AGCTTTTACAATAGACTAGAAATTAACAAGTCGGCAATTTTCAGTAATAAAATTACTCAT
rJMFF046N05- AGCTTTTACAATAGACTAGAAATTAACAAGTCGGCAATTTTCAGTAATAAAATTACTCAT
JMFN020I19+ AGCTTTTACAATAGACTAGAAATTAACAAGTCGGCAATTTTCAGTAATAAAATTACTCAT
rJMFF019F08- AGCTTTTACAATAGACTAGAAATTAACAAGTCGGCAATTTTCAGTAATAAAATTACTCAT
rJMSF022K17- AGCTTTTACAATAGACTAGAAATTAACAAGTCGGCAATTTTCAGTAATAAAATTACTCAT
____________________________________________________________
consensus AGCTTTTACAATAGACTAGAAATTAACAAGTCGGCAATTTTCAGTAATAAAATTACTCAT
. : . : . : . : . : . :
JMFN013B22+ AGGGTTCAAATTAAGCAAACTCAGAGGGGGTTAAGGACTAACAGCTAGAAGGGTAACCAA
rJMFF046N05- AGGGTTCAAATTAAGCAAACTCAGAGGGGGTTAAGGACTAACAGCTAGAAGGGTAACCAA
JMFN020I19+ AGGGTTCAAATTAAGCAAACTCAGAGGGGGTTAAGGACTAACAGCTAGAAGGGTAACCAA
rJMFF019F08- AGGGTTCAAATTAAGCAAACTCAGAGGGGGTTAAGGACTAACAGCTAGAAGGGTAACCAA
JMFF046N05+ CAA
JMFF019F08+ CTAACAGCTAGAAGGGTAACCAA
rJMSF022K17- AGGGTTCAAATTAAGCAAACTCAGAGGGGGTTAAGGACTAACAGCTAGAAGGGTAACCAA
____________________________________________________________
consensus AGGGTTCAAATTAAGCAAACTCAGAGGGGGTTAAGGACTAACAGCTAGAAGGGTAACCAA
. : . : . : . : . : . :
JMFN013B22+ GTTCAGCGCTCTAGTAATTAGTGCAGGTAAGTTGCCTGGTAATGGTAGCCATTTGCAAAG
rJMFF046N05- GTTCAGCGCTCTAGTAATTAGTGCAGGTAAGTTGCCTGGTAATGGTAGCCATTTGCAAAG
JMFN020I19+ GTTCAGCGCTCTAGTAATTAGTGCAGGTAAGTTGCCTGGTAATGGTAGCCATTTGCAAAG
rJMFF019F08- GTTCAGCGCTCTAGTAATTAGTGCAGGTAAGTTGCCTGGTAATGGTAGCCATTTGCAAAG
JMFF046N05+ GTTCAGCGCTCTAGTAATTAGTGCAGGTAAGTTGCCTGGTAATGGTAGCCATTTGCAAAG
JMFF019F08+ GTTCAGCGCTCTAGTAATTAGTGCAGGTAAGTTGCCTGGTAATGGTAGCCATTTGCAAAG
rJMSF022K17- GTTCAGCGCTCTAGTAATTAGTGCAGGTAAGTTGCCTGGTAATGGTAGCCATTTGCAAAG
____________________________________________________________
consensus GTTCAGCGCTCTAGTAATTAGTGCAGGTAAGTTGCCTGGTAATGGTAGCCATTTGCAAAG
. : . : . : . : . : . :
JMFN013B22+ AAGTTGCCATGCCCAGGGAGATTGTAAGCAGGAGTAGCCATGAACGAGGGGATATGGGTG
rJMFF046N05- AAGTTGCCATGCCCAGGGAGATTGTAAGCAGGAGTAGCCATGAACGAGGGGATATGGGTG
JMFN020I19+ AAGTTGCCATGCCCAGGGAGATTGTAAGCAGGAGTAGCCATGAACGAGGGGATATGGGTG
rJMFF019F08- AAGTTGCCATGCCCAGGGAGATTGTAAGCAGGAGTAGCCATGAACGAGGGGATATGGGTG
JMFF046N05+ AAGTTGCCATGCCCAGGGAGATNGTAAGCAGGAGTAGCCATGAACGAGGGGATATGGGTG
JMFF019F08+ AAGTTGCCATGCCCAGGGAGATTGTAAGCAGGAGTAGCCATGAACGAGGGGATATGGGTG
rJMSF022K17- AAGTTGCCATGCCCAGGGAGATTGTAAGCAGGAGTAGCCATGAACGAGGGGATATGGGTG
____________________________________________________________
consensus AAGTTGCCATGCCCAGGGAGATTGTAAGCAGGAGTAGCCATGAACGAGGGGATATGGGTG
. : . : . : . : . : . :
JMFN013B22+ TCGGTTGGTCCAGTGTAGGCATACTGTCTCTCGTACAAGAACGGTGGGTACCTGTCAGTG
rJMFF046N05- TCGGTTGGTCCAGTGTAGGCATACTGTCTCTCGTACAAGAACGGTGGGTACCTGTCAGTG
JMFN020I19+ TCGGTTGGTCCAGTGTAGGCATACTGTCTCTCGTACAAGAACGGTGGGTACCTGTCAGTG
rJMFF019F08- TCGGTTGGTCCAGTGTAGGCATACTGTCTCTCGTACAAGAACGGTGGGTACCTGTCAGTG
JMFF046N05+ TCGGTTGGTCCAGTGTAGGCATACTGTCTCTCGTACAAGAACGGTGGGTACCTGTCAGTG
JMFF019F08+ TCGGTTGGTCCAGTGTAGGCATACTGTCTCTCGTACAAGAACGGTGGGTACCTGTCAGTG
rJMSF022K17- TCGGTTGGTCCAGTGTAGGCATACTGTCTCTCGTACAAGAACGGTGGGTACCTGTCAGTG
____________________________________________________________
consensus TCGGTTGGTCCAGTGTAGGCATACTGTCTCTCGTACAAGAACGGTGGGTACCTGTCAGTG
. : . : . : . : . : . :
JMFN013B22+ GTTCTTGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATG
rJMFF046N05- GTTCTTGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATGGCAAACA
JMFN020I19+ GTTCTTGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATGGCAAACA
rJMFF019F08- GTTCTTGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATGGCAAACA
JMFF046N05+ GTTCTTGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATGGCAAACA
JMFF019F08+ GTTCTTGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATGGCAAACA
rJMSF022K17- GTTCTTGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATGGCAAACA
____________________________________________________________
consensus GTTCTTGCGTAGAAGTTCTTGTCAGTGGCAACGTTAGCAACTCGGGAACCATGGCAAACA
. : . : . : . : . : . :
rJMFF046N05- CCATTTGCACGGGGTC-TTTTGGGTTGAGGTTTTGGAACTTCAGTTGCCCTTTTCTTGTC
JMFN020I19+ CCATTTGCACGGGGTC-TTTTGGGTTGAGGTTTTGGAACTTCAGTTGCCCTTTTCTTGTC
rJMFF019F08- CCATTTGCACGGGGTCTTTTTGGGTTGAGGTTTTGGAACTTCAGTTGCCCTTTTCTTGTC
JMFF046N05+ CCATTTGCACGGGGTC-TTTTGGGTTGAGGTTTTGGAACTTCAGTTGCCCTTTTCTTGTC
JMFF019F08+ CCATTTGCACGGGGTC-TTTTGGGTTGAGGTTTTGGAACTTCAGTTGCCCTTTTCTTGTC
rJMSF022K17- CCATTTGCACGGGGTC-TTTTGGGTTGAGGTTTTGGAACTTCAGTTGCCCTTTTCTTGTC
____________________________________________________________
consensus CCATTTGCACGGGGTC-TTTTGGGTTGAGGTTTTGGAACTTCAGTTGCCCTTTTCTTGTC
. : . : . : . : . : . :
rJMFF046N05- TGCCTTGGCTTTCTCCATCTGG
JMFN020I19+ TGCCTTGGCTTTCTCCATCTGGAGAACTCGTTTTTGGATGGGATCCACAGGATATTGCTC
rJMFF019F08- TGCCTTGGCTTTCTCCATCTGGAGAACTCGTTTTTGGATGGGATCCACAGGATATTGCTC
JMFF046N05+ TGCCTTGGCTTTCTCCATCTGGAGAACTCGTTTTTGGATGGGATCCACAGGATATTGCTC
JMFF019F08+ TGCCTTGGCTTTCTCCATCTGGAGAACTCGTTTTTGGATGGGATCCACAGGATATTGCTC
rJMSF022K17- TGCCTTGGCTTTCTCCATCTGGAGAACTCGTTTTTGGATGGGATCCACAGGATATTGCTC
JMSF022K17+ TGGAGAACTCGTTTTNGGATGGGATCCACAGGATATTGCTC
____________________________________________________________
consensus TGCCTTGGCTTTCTCCATCTGGAGAACTCGTTTTTGGATGGGATCCACAGGATATTGCTC
. : . : . : . : . : . :
JMFN020I19+ CTCAAGATTATGATCCTCGATGCAT
rJMFF019F08- CTCAAGATTATGATCCTCGATGCATTTAATCACAGCCTTCAGTGCATTCAATTCCTTCTC
JMFF046N05+ CTCAAGATTATGATCCTCGATGCATTTAATCACAGCCTTCAGTGCATTCAATTCCTTCTC
JMFF019F08+ CTCAAGATTATGATCCTCGATGCATTTAATCACAGCCTTCAGTGCATTCAATTCCTTCTC
rJMSF022K17- CTCAAGATTATGATCCTCGATGCATTTAATCACAGCCTTCAGTGCATTCAATTCCTTCTC
JMSF022K17+ CTCAAGATTATGATCCTCGATGCATTTAATCACAGCCTTCAGTGCATTCAATTCCTTCTC
____________________________________________________________
consensus CTCAAGATTATGATCCTCGATGCATTTAATCACAGCCTTCAGTGCATTCAATTCCTTCTC
. : . : . : . : . : . :
rJMFF019F08- ATTTATATCATTCTGTGCAGTGGGTGTATTTCCAGATTTTCCAGGAGAAGGAGCCTTGCT
JMFF046N05+ ATTTATATCATTCTGTGCAGTGGGTGTATTTCCAGATTTTCCAGGAGAAGGAGCCTTGCT
JMFF019F08+ ATTTATATCATTCTGTGCAGTGGGTGTATTTCCAGATTTTCCAGGAGAAGGAGCCTTGCT
rJMSF022K17- ATTTATATCATTCTGTACAGTGGGTGTATTTCCAGATTTTCCAGGAGAAGGAGCCTTGCT
JMSF022K17+ ATTTATATCATTCTGTACAGTGGGTGTATTTCCAGATTTTCCAGGAGAAGGAGCCTTGCT
____________________________________________________________
consensus ATTTATATCATTCTGTGCAGTGGGTGTATTTCCAGATTTTCCAGGAGAAGGAGCCTTGCT
. : . : . : . : . : . :
rJMFF019F08- TGCCTCGTTCAGATAAGATTTCAGTAGAGGAACAGGTGGAAATTTCTCTGTCAGCTCAAA
JMFF046N05+ TGCCTCGTTCAGATAAGATTTCAGTAGAGGAACAGGTGGAAATTTCTCTGTCAGCTCAAA
JMFF019F08+ TGCCTCGTTCAGATAAGATTTCAGTAGAGGAACAGGTGGAAATTTCTCTGTCAGCTCAAA
rJMSF022K17- TGCCTCGTTCAGATAAGATTTCAGTAGAGGAACAGGTGGAAATTTCTCTGTCAGCTCAAA
JMSF022K17+ TGCCTCGTTCAGATAAGATTTCAGTAGAGGAACAGGTGGAAATTTCTCTGTCAGCTCAAA
____________________________________________________________
consensus TGCCTCGTTCAGATAAGATTTCAGTAGAGGAACAGGTGGAAATTTCTCTGTCAGCTCAAA
. : . : . : . : . : . :
rJMFF019F08- GGCAAAAGCTAGATTAACAGCATCTATTTGCCTTCCAAT
JMFF046N05+ GGCAAAAGCTAGATTAACAGCATCTATTTGCCTTCCAA
JMFF019F08+ GGCAAAAGCTAGATTAACAGCATCTATTTGCCTTCCAAT
rJMSF022K17- GGCAAAAGCTAGATTAACAGCATCTATTTGCCTTCCAATATT
JMSF022K17+ GGCAAAAGCTAGATTAACAGCATCTATTTGCCTTCCAATATTTACCAAGACATCAATAAC
____________________________________________________________
consensus GGCAAAAGCTAGATTAACAGCATCTATTTGCCTTCCAATATTTACCAAGACATCAATAAC
. : . : . : . : . : . :
JMSF022K17+ ACCTGGCATTTTATCTGAAAGTCCAAGGGAACGGCATAAATCAGCTGTTTGACGACGACG
____________________________________________________________
consensus ACCTGGCATTTTATCTGAAAGTCCAAGGGAACGGCATAAATCAGCTGTTTGACGACGACG
. : . : . : . : . : . :
JMSF022K17+ GGAAACCATGGGTATCAATTTGGTTAAATCCTCCTGGTCAAAATCTGAGTTAATACCAAA
____________________________________________________________
consensus GGAAACCATGGGTATCAATTTGGTTAAATCCTCCTGGTCAAAATCTGAGTTAATACCAAA
. : . : . : . : . : . :
JMSF022K17+ AGTCGCTAGAAGCTGTAAGAATGCATGAGCCTCCAAGGAGTTCCCGTGATTGGCATCAAC
____________________________________________________________
consensus AGTCGCTAGAAGCTGTAAGAATGCATGAGCCTCCAAGGAGTTCCCGTGATTGGCATCAAC
. : . : . : . : . : . :
JMSF022K17+ ATCCAGATCATCCAACTTTGGTTTCCAGTCTTCAGCAATAGTTTTTGCTCGAGCCTTAAC
____________________________________________________________
consensus ATCCAGATCATCCAACTTTGGTTTCCAGTCTTCAGCAATAGTTTTTGCTCGAGCCTTAAC
. : . : . : . : . : . :
JMSF022K17+ ACTTTCAGAGATCACTCTTGGAATAGACTCCATTTTCATGTTTGACAATAAACTGCTGAG
____________________________________________________________
consensus ACTTTCAGAGATCACTCTTGGAATAGACTCCATTTTCATGTTTGACAATAAACTGCTGAG
. : . : . : . : . : . :
JMSF022K17+ GCACTCCATCAACATTATACAGGTTCGCCGAAGACCTAAGAGGTTTGCATCTTTTTTAGC
____________________________________________________________
consensus GCACTCCATCAACATTATACAGGTTCGCCGAAGACCTAAGAGGTTTGCATCTTTTTTAGC