Contig 013356:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002K03Sequence338013356 (4)gb|KJB56382.1|1e-43hypothetical protein B456_009G128500 [Gossypium raimondii]667013356 (4)ref|XP_009610444.1|4e-94PREDICTED: protein LURP-one-related 12-like [Nicotiana tomentosiformis]
JMSF022I23Sequence682013356 (4)gb|KJB56382.1|1e-86hypothetical protein B456_009G128500 [Gossypium raimondii]722013356 (4)ref|XP_009610444.1|6e-98PREDICTED: protein LURP-one-related 12-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I23-                                           TATTTCAAATGAGACTATTTTATACAA
                      ____________________________________________________________
consensus                                              TATTTCAAATGAGACTATTTTATACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-                                     TGGTGGGTTCAACACAGGTGGGGTCCACGTCTA
rJMSF022I23-          GATTTATTCCGAAATTTCAAGGAGAAATGGTGGGTTCAACACAGGTGGGGTCCACGTCTA
                      ____________________________________________________________
consensus             GATTTATTCCGAAATTTCAAGGAGAAATGGTGGGTTCAACACAGGTGGGGTCCACGTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          CCCGATTATTATCGTGGTCGTTGAGGAAAGGTTCATCGCCGTCGATCTGGTCCAGCACGA
rJMSF022I23-          CCCGATTATTATCGTGGTCGTTGAGGAAAGGTTCATCGCCGTCGATCTGGTCCAGCACGA
JMSF022I23+                                                GCCGTCGATCTNGTCCAGCACGA
                      ____________________________________________________________
consensus             CCCGATTATTATCGTGGTCGTTGAGGAAAGGTTCATCGCCGTCGATCTGGTCCAGCACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          GGATAAG-CCCCATGGCGAAGGCCCCGTCAAAGCCGGGATTGAGTGTGAGCGAGAACACG
rJMSF022I23-          GGATAAG-CCCCATGGCGAAGGCCCCGTCAAAGCCGGGATTGAGTGTGAGCGAGAACACG
JMSF022I23+           GGATAAGCCCCCATGGCGAAGGCCCCGTCAAAGCCGGGATTGAGTGTGAGCGAGAACACG
                      ____________________________________________________________
consensus             GGATAAG-CCCCATGGCGAAGGCCCCGTCAAAGCCGGGATTGAGTGTGAGCGAGAACACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          TCTTTACCGAGCACCGTCTTGGAGGAAGCGTCAACTTTGCGGCGAATCTCGGCAACCGAT
rJMSF022I23-          TCTTTACCGAGCACCGTCTTGGAGGAAGCGTCAACTTTGCGGCGAATCTCGGCAACCGAT
JMSF022I23+           TCTTTACCGAGCACCGTCTTGGAGGAAGCGTCAACTTTGCGGCGAATCTCGGCAACCGAT
                      ____________________________________________________________
consensus             TCTTTACCGAGCACCGTCTTGGAGGAAGCGTCAACTTTGCGGCGAATCTCGGCAACCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          TGCTTGTCGGCGTCGTAGATGGTGCAGCTCCGCTGCGCGAAGCAGCCTTCGATGTGGTAC
rJMSF022I23-          TGCTTGTCGGCGTCGTAGATGGTGCAGCTCCGCTGCGCGAAGCAGCCTTCGATGTGGTAC
JMSF022I23+           TGCTTGTCGGCGTCGTAGATGGTGCAGCTCCGCTGCGCGAAGCAGCCTTCGATGTGGTAC
                      ____________________________________________________________
consensus             TGCTTGTCGGCGTCGTAGATGGTGCAGCTCCGCTGCGCGAAGCAGCCTTCGATGTGGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          TCTTCGGTTGGAGTGTGGTACACCTCCACCGTCACGCCCGACCGTCCGATTATCGACGAC
rJMSF022I23-          TCTTCGGTTGGAGTGTGGTACACCTCCACCGTCACGCCCGACCGTCCGATTATCGACGAC
JMSF022I23+           TCTTCGGTTGGAGTGTGGTACACCTCCACCGTCACGCCCGACCGTCCGATTATCGACGAC
                      ____________________________________________________________
consensus             TCTTCGGTTGGAGTGTGGTACACCTCCACCGTCACGCCCGACCGTCCGATTATCGACGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          CGCCGCACGCTGAANATTGGCTTCTCCCCCTCCATTCTCTCCCCTAAGTACCCTTCCCAT
rJMSF022I23-          CGCCGCACGCTGAAGATTGGCTTCTCCCCCTCCATTCTCTCCCCTAAGTACCCTTCCCAT
JMSF002K03+                                                       TAAGTACCCTTCCCAT
JMSF022I23+           CGCCGCACGCTGAAGATTGGCTTCTCCCCCTCCATTCTCTCCCCTAAGTACCCTTCCCAT
                      ____________________________________________________________
consensus             CGCCGCACGCTGAAGATTGGCTTCTCCCCCTCCATTCTCTCCCCTAAGTACCCTTCCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          CTGTTATGCAGACTTGGCCTCTTTTTGCGGACGGTGAGGAGGCATTTTCCGGCGGCGTCC
rJMSF022I23-          CTGTTATGCAGACTTGGCCTCTTTTTGCGGACGGTGAGGAGGCATTTTCCGGCGGCGTCC
JMSF002K03+           CTGTTATGCAGACTTGGCCTCTTTTTGCGGACGGTGAGGAGGCATTTTCCGGCGGCGTCC
JMSF022I23+           CTGTTATGCAGACTTGGCCTCTTTTTGCGGACGGTGAGGAGGCATTTTCCGGCGGCGTCC
                      ____________________________________________________________
consensus             CTGTTATGCAGACTTGGCCTCTTTTTGCGGACGGTGAGGAGGCATTTTCCGGCGGCGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          ATGAGGACGACTTCGGTCCGGTCACGGGAGTCGGGGCCGTAGGTGTCGACACGGAAGACA
rJMSF022I23-          ATGAGGACGACTTCGGTCCGGTCACGGGAGTCGGGGCCGTAGGTGTCGACACGGAAGACA
JMSF002K03+           ATGAGGACGACTTCGGTCCGGTCACGGGAGTCGGGGCCGTAGGTGTCGACACGGAAGACA
JMSF022I23+           ATGAGGACGACTTCGGTCCGGTCACGGGAGTCGGGGCCGTAGGTGTCGACACGGAAGACA
                      ____________________________________________________________
consensus             ATGAGGACGACTTCGGTCCGGTCACGGGAGTCGGGGCCGTAGGTGTCGACACGGAAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          AGTTGGCCGGTGCAGTCTTATGCGGAGAAGCCGTCGCCGGNTAANAAAAGGGAAGTTTTG
rJMSF022I23-          AGTTGGCCGGTGCAGTCGTAGGCGGAGAAGCCGTCGCCGGCGAAGAAAAGGGAAGTTTTG
JMSF002K03+           AGTTGGCCGGTGCAGTCGTAGGCGGAGAAGCCGTCGCCGGCGAAGAAAAGGGAAGTTTTG
JMSF022I23+           AGTTGGCCGGTGCAGTCGTAGGCGGAGAAGCCGTCGCCGGCGAAGAAAAGGGAAGTTTTG
                      ____________________________________________________________
consensus             AGTTGGCCGGTGCAGTCGTAGGCGGAGAAGCCGTCGCCGGCGAAGAAAAGGGAAGTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          AGAACAGTGAGATGCTTCTCTTCATTGTATATGTATCCCTCGTCTACAACCGCTCCACTC
rJMSF022I23-          AGAACAGTGAGATGCTTCTCTTCATTGTATATGTATCCCTCGTCTACAACCGCTCCACTC
JMSF002K03+           AGAACAGTGAGATGCTTCTCTTCATTGTATATGTATCCCTCGTCTACAACCGCTCCACTC
JMSF022I23+           AGAACAGTGAGATGCTTCTCTTCATTGTATATGTATCCCTCGTCTACAACCGCTCCACTC
                      ____________________________________________________________
consensus             AGAACAGTGAGATGCTTCTCTTCATTGTATATGTATCCCTCGTCTACAACCGCTCCACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002K03-          TTCATTCTTC-AATTCTCTTCTTCGCGCGCGCTGCA                        
rJMSF022I23-          TTCATTCTTCAAATTCTCTTCTTCGCGCGCGCTGCA                        
JMSF002K03+           TTCATTCTTC-AATTCTCTTCTTCGCGCGCGCTGCAGAAACAGAGAAAACTTTCTATATG
JMSF022I23+           TTCATTCTTC-AATTCTCTTCTTCGCGCGCGCTGCAGAAAAAGAGAAAACTTTCTATATG
                      ____________________________________________________________
consensus             TTCATTCTTC-AATTCTCTTCTTCGCGCGCGCTGCAGAAACAGAGAAAACTTTCTATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002K03+           GCTATGGAGTTGAAGCAAAGCT                                      
JMSF022I23+           GCTATGGAGTTGAAGCAAAGCTGAGAGGGCGGAGGAGGAAGAAGAAGAATATGTAGAGTC
                      ____________________________________________________________
consensus             GCTATGGAGTTGAAGCAAAGCTGAGAGGGCGGAGGAGGAAGAAGAAGAATATGTAGAGTC