Contig 013351:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021N08Sequence675013351 (2)ref|XP_007039117.1|1e-40F-box family protein, putative isoform 1 [Theobroma cacao] gb|EOY23618.1| F-box 765013351 (2)emb|CBI23042.3|3e-23unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF021N08-                                                      ACACATAAGAGATACA
                      ____________________________________________________________
consensus                                                         ACACATAAGAGATACA
 
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rJMSF021N08-          CACTACATATATATAACAAACAAATTACAAGAGGTTTAAGATCAATGTATGTATGAAAAG
                      ____________________________________________________________
consensus             CACTACATATATATAACAAACAAATTACAAGAGGTTTAAGATCAATGTATGTATGAAAAG
 
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rJMSF021N08-          AAAACATGCACAGATAATCCTAAACCTGTTAGCAGTTCATATCAAACCAAATCATAACAA
                      ____________________________________________________________
consensus             AAAACATGCACAGATAATCCTAAACCTGTTAGCAGTTCATATCAAACCAAATCATAACAA
 
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rJMSF021N08-          CAACCTAAGCTACACATATATATAGAGAACACCAAACAAAAACCACCTTTTCTTTTTGTT
                      ____________________________________________________________
consensus             CAACCTAAGCTACACATATATATAGAGAACACCAAACAAAAACCACCTTTTCTTTTTGTT
 
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rJMSF021N08-          TTTTTGTTATCCAGACATGCATACAGTGCTTGGTTTTACCATCCGCCGCCGCCGCCTCCG
                      ____________________________________________________________
consensus             TTTTTGTTATCCAGACATGCATACAGTGCTTGGTTTTACCATCCGCCGCCGCCGCCTCCG
 
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rJMSF021N08-          GCGGCGCTGCCACCGTGGGTTCCATTCCAATACCCGTTACTTTCTCCTTGGGCTCTATAC
                      ____________________________________________________________
consensus             GCGGCGCTGCCACCGTGGGTTCCATTCCAATACCCGTTACTTTCTCCTTGGGCTCTATAC
 
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rJMSF021N08-          TGGTCAAACCCGGATTTCAAATCCTCAAGATTGGGGAAAAAGACTCGAGCCGCCCCACTC
                      ____________________________________________________________
consensus             TGGTCAAACCCGGATTTCAAATCCTCAAGATTGGGGAAAAAGACTCGAGCCGCCCCACTC
 
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rJMSF021N08-          TCCTCCACTTGATGATTCCCAAACCCATTATTCCCAAACCCGTCTAGGGCGGCGGGTTTC
                      ____________________________________________________________
consensus             TCCTCCACTTGATGATTCCCAAACCCATTATTCCCAAACCCGTCTAGGGCGGCGGGTTTC
 
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rJMSF021N08-          ACATCATGCAACGGGAACAGCAACCCAGAAGAGAACACCGCCGTGGACGGGTCAGAACCG
JMSF021N08+                                                            GGTCAGAACCG
                      ____________________________________________________________
consensus             ACATCATGCAACGGGAACAGCAACCCAGAAGAGAACACCGCCGTGGACGGGTCAGAACCG
 
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rJMSF021N08-          GGTATAGGAATGTGAAACGGGTTGAGATGATGCAAGATTCCAGAATTGGGTGGTGGGTAG
JMSF021N08+           GGTATAGGAATGTGAAACGGGTTGAGATGATGCAAGATTCCAGAATTGGGTGGTGGGTAG
                      ____________________________________________________________
consensus             GGTATAGGAATGTGAAACGGGTTGAGATGATGCAAGATTCCAGAATTGGGTGGTGGGTAG
 
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rJMSF021N08-          GCCAAATTGAGGTCCTGCCCGGCATTATTAGGGTTTAGAAGAAAGCACGGCGATGGAGCG
JMSF021N08+           GCCAAATTGAGGTCCTGCCCGGCATTATTAGGGTTTAGAAGAAAGCACGGCGATGGAGCG
                      ____________________________________________________________
consensus             GCCAAATTGAGGTCCTGCCCGGCATTATTAGGGTTTAGAAGAAAGCACGGCGATGGAGCG
 
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rJMSF021N08-          GAATGATCTGGAAGCTTCTTGGAAGCCGAGGAGGAAGAAGATAAGGAAGAAGAAGAAGAA
JMSF021N08+           GAATGATCTGGAAGCTTCTTGGAAGCCGAGGAGGAAGAAGATAAGGAAGAAGAAGAAGAA
                      ____________________________________________________________
consensus             GAATGATCTGGAAGCTTCTTGGAAGCCGAGGAGGAAGAAGATAAGGAAGAAGAAGAAGAA
 
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rJMSF021N08-          GAAAAAGAAGAAGAAGATCTTCGGTTCTTCCGTGAACCACCCCCCACGGGAACATTCCTC
JMSF021N08+           GAAAAAGAAGAAGAAGATCTTCGGTTCTTCCGTGAACCACCCCCCACGGGAACATTCCTC
                      ____________________________________________________________
consensus             GAAAAAGAAGAAGAAGATCTTCGGTTCTTCCGTGAACCACCCCCCACGGGAACATTCCTC
 
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rJMSF021N08-          ATGGAACCCCCTTCAGTCCAGTACCTTCG                               
JMSF021N08+           ATGGAACCCCCTTCAGTCCAGTACCTTCGACAAGTCTTACAAAAGTACCTGGGCTGAGAA
                      ____________________________________________________________
consensus             ATGGAACCCCCTTCAGTCCAGTACCTTCGACAAGTCTTACAAAAGTACCTGGGCTGAGAA
 
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JMSF021N08+           AGACTGTAATTGTTGTAGTAACAGAATTTGGTGTTTGTGGAATTGCAGCGAGGACAGTTC
                      ____________________________________________________________
consensus             AGACTGTAATTGTTGTAGTAACAGAATTTGGTGTTTGTGGAATTGCAGCGAGGACAGTTC
 
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JMSF021N08+           AATGCTTTTTCCTTTTCTGGCCTGGGTTTCTTCTCTCCTCTTGTTGTTTCCACAACATTC
                      ____________________________________________________________
consensus             AATGCTTTTTCCTTTTCTGGCCTGGGTTTCTTCTCTCCTCTTGTTGTTTCCACAACATTC
 
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JMSF021N08+           TCCACAACCCCAATACCCTGTGGCCACTGATGAGCAGTATCCATCTGAACAAAAGAGTGA
                      ____________________________________________________________
consensus             TCCACAACCCCAATACCCTGTGGCCACTGATGAGCAGTATCCATCTGAACAAAAGAGTGA
 
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JMSF021N08+           CAAAAGTGGAGAAAAAGAAAAGAAAAAAAGCTAACGATCTGAAAAAAGCAAAGAGTGTTG
                      ____________________________________________________________
consensus             CAAAAGTGGAGAAAAAGAAAAGAAAAAAAGCTAACGATCTGAAAAAAGCAAAGAGTGTTG
 
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JMSF021N08+           AAGCTAGCTTGGTAAATAATAGGAGGAATAGAGGAGAACAAAAACTATGTATCCCACTTA
                      ____________________________________________________________
consensus             AAGCTAGCTTGGTAAATAATAGGAGGAATAGAGGAGAACAAAAACTATGTATCCCACTTA
 
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JMSF021N08+           GCTTTCAACCAATTCAAGAAAGAAATTAAAGCAGCTGATGAAAGGCAGCCCAGAACTCCC
                      ____________________________________________________________
consensus             GCTTTCAACCAATTCAAGAAAGAAATTAAAGCAGCTGATGAAAGGCAGCCCAGAACTCCC