Contig 013347:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023A21Sequence415013347 (8)ref|XP_009604633.1|2e-63PREDICTED: chromophore lyase CRL, chloroplastic isoform X2 [Nicotiana tomentosi
JMFF024K07Sequence456013347 (8)ref|XP_009604633.1|2e-70PREDICTED: chromophore lyase CRL, chloroplastic isoform X2 [Nicotiana tomentosi737013347 (8)ref|XP_010322633.1|8e-144PREDICTED: chromophore lyase CRL, chloroplastic isoform X4 [Solanum lycopersicu
JMFF048G20Sequence252013347 (8)ref|XP_009604632.1|1e-08PREDICTED: chromophore lyase CRL, chloroplastic isoform X1 [Nicotiana tomentosi292013347 (8)ref|XP_009771376.1|111PREDICTED: chromophore lyase CRL, chloroplastic [Nicotiana sylvestris]
JMFN013G07Sequence627013347 (8)ref|XP_009604633.1|1e-101PREDICTED: chromophore lyase CRL, chloroplastic isoform X2 [Nicotiana tomentosi
JMSF021H04Sequence690013347 (8)ref|XP_009604632.1|2e-113PREDICTED: chromophore lyase CRL, chloroplastic isoform X1 [Nicotiana tomentosi747013347 (8)ref|XP_009604633.1|3e-150PREDICTED: chromophore lyase CRL, chloroplastic isoform X2 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMFF048G20-                                                      GCGTAAATCAACGGAA
                      ____________________________________________________________
consensus                                                         GCGTAAATCAACGGAA
 
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rJMFF048G20-          AATATATATTGATAGACTCGATATGGGAGTTTGAAATTTACATTACAATACTACAGAACA
rJMFF024K07-                  TTGATAGACTCGATATGGGAGTTTGAAATTTACATTACAATACTACAGAACA
rJMSF021H04-                                  GGGAGTTTGAAATTTACATTACAATACTACAGAACA
                      ____________________________________________________________
consensus             AATATATATTGATAGACTCGATATGGGAGTTTGAAATTTACATTACAATACTACAGAACA
 
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rJMFF048G20-          AAGTATCAATCTTGAATAACAAATGAACCCTCTATTCTTTTCTCTATGGATGGGGAAGAC
rJMFF024K07-          AAGTATCAATCTTGAATAACAAATGAACCCTCTATTCTTTTCTCTATGGATGGGGAAGAC
rJMSF021H04-          AAGTATCAATCTTGAATAACAAATGAACCCTCTATTCTTTTCTCTATGGATGGGGAAGAC
                      ____________________________________________________________
consensus             AAGTATCAATCTTGAATAACAAATGAACCCTCTATTCTTTTCTCTATGGATGGGGAAGAC
 
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rJMFF048G20-          AACATCAAAGCGGAAAGGTCATCAAAACTAGAAGCTGGTGCAGGTTTGAACTCATATGGA
rJMFF024K07-          AACATCAAAGCGGAAAGGTCATCAAAACTAGAAGCTGGTGCAGGTTTGAACTCATATGGA
rJMSF021H04-          AACATCAAAGCGGAAAGGTCATCAAAACTAGAAGCTGGTGCAGGTTTGAACTCATATGGA
                      ____________________________________________________________
consensus             AACATCAAAGCGGAAAGGTCATCAAAACTAGAAGCTGGTGCAGGTTTGAACTCATATGGA
 
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rJMFF048G20-          CCTCCCTTTACACCCCAGACCTGATTTCCACTCTCATCGTAGCCTCTATCCCAGGAATGT
rJMFF024K07-          CCTCCCTTTACACCCCAGACCTGATTTCCACTCTCATCGTAGCCTCTATCCCAGGAATGT
rJMSF021H04-          CCTCCCTTTACACCCCAGACCTGATTTCCACTCTCATCGTAGCCTCTATCCCAGGAATGT
                      ____________________________________________________________
consensus             CCTCCCTTTACACCCCAGACCTGATTTCCACTCTCATCGTAGCCTCTATCCCAGGAATGT
 
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rJMFF048G20-          ATCTCATTATTCTTCACCACTGCAAGTTCTGACGTA                        
rJMFF024K07-          ATCTCATTATTCTTCAGCACTGCAAGTTCTGACGTACAATATGATGCACCGTTCCATGTA
rJMSF021H04-          ATCTCATTATTCTTCAGCACTGCAAGTTCTGACGTACAATATGATGCACCGTTCCATGTA
                      ____________________________________________________________
consensus             ATCTCATTATTCTTCAGCACTGCAAGTTCTGACGTACAATATGATGCACCGTTCCATGTA
 
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rJMFF024K07-          TTAGGAAATCCATCTGCAGGTGTAGATCCTTCATATAAGCATCGCTTCCCACGCTCACAG
rJMSF021H04-          TTAGGAAATCCATCTGCAGGTGTAGATCCTTCATATAAGCATCGCTTCCCACGCTCACAG
JMSF021H04+                                         TCATATAAGCATCGCTTCCCACGCTCACAG
                      ____________________________________________________________
consensus             TTAGGAAATCCATCTGCAGGTGTAGATCCTTCATATAAGCATCGCTTCCCACGCTCACAG
 
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rJMFF024K07-          CGTTTCAGATGAATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
rJMSF021H04-          CGTTTCAGATGAATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
JMFN013G07+                       ATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
JMSF021H04+           CGTTTCAGATGAATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
                      ____________________________________________________________
consensus             CGTTTCAGATGAATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
 
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rJMFF024K07-          GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
rJMSF021H04-          GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
JMFN013G07+           GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
JMSF021H04+           GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
                      ____________________________________________________________
consensus             GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
 
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rJMFF024K07-          TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
rJMSF021H04-          TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
JMFF023A21+                                                            CAATGCAAAAT
JMFF024K07+                          ACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
JMFN013G07+           TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
JMSF021H04+           TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
                      ____________________________________________________________
consensus             TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
 
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rJMFF024K07-          CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
rJMSF021H04-          CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
JMFF023A21+           CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
JMFF024K07+           CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
JMFN013G07+           CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
JMSF021H04+           CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
                      ____________________________________________________________
consensus             CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
 
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rJMFF024K07-          GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
rJMSF021H04-          GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
JMFF023A21+           GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
JMFF024K07+           GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
JMFN013G07+           GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
JMSF021H04+           GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
                      ____________________________________________________________
consensus             GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
 
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rJMFF024K07-          GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
rJMSF021H04-          GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
JMFF023A21+           GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
JMFF024K07+           GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
JMFN013G07+           GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
JMSF021H04+           GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
                      ____________________________________________________________
consensus             GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
 
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rJMFF024K07-          CCAGCATGGTCCCAACGGGTGGTGG                                   
rJMSF021H04-          CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGT         
JMFF023A21+           CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
JMFF024K07+           CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
JMFN013G07+           CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
JMFF048G20+                                                      CGAGAAGTGCCCCTCCG
JMSF021H04+           CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
                      ____________________________________________________________
consensus             CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
 
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JMFF023A21+           ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
JMFF024K07+           ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
JMFN013G07+           ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
JMFF048G20+           ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
JMSF021H04+           ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
                      ____________________________________________________________
consensus             ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
 
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JMFF023A21+           TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
JMFF024K07+           TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
JMFN013G07+           TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
JMFF048G20+           TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
JMSF021H04+           TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
                      ____________________________________________________________
consensus             TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
 
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JMFF023A21+           ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAACCAAC                
JMFF024K07+           ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTAT         
JMFN013G07+           ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTATACACTCTTC
JMFF048G20+           ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTATACACTCTTC
JMSF021H04+           ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTATACACTCTTC
                      ____________________________________________________________
consensus             ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTATACACTCTTC
 
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JMFN013G07+           AACTCCAGAATTGCAAATTATATTTTCTCCTTCCGTGCG                     
JMFF048G20+           AACTCCAGAATTGCAAATTATATTTTCTCCTTCCGTGCGCCCTATCTCACT         
JMSF021H04+           AACTCCAGAATTGCAAATTATATTTTCTCCTTCCGTGCGCCCTATCTCACTCTTCGTGTC
                      ____________________________________________________________
consensus             AACTCCAGAATTGCAAATTATATTTTCTCCTTCCGTGCGCCCTATCTCACTCTTCGTGTC