Contig 013343:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006H11Sequence272003547 (3)ref|XP_007134951.1|1e-04hypothetical protein PHAVU_010G089400g [Phaseolus vulgaris] gb|ESW06945.1| hypot147013343 (3)gb|AAF78518.1|AF195221_12e-13chlorophyll a/b-binding protein [Pyrus pyrifolia]
JMSF009J03Sequence256013343 (3)ref|XP_011096520.1|2e-13PREDICTED: chlorophyll a-b binding protein 21, chloroplastic [Sesamum indicum]768003790 (15)ref|XP_008439658.1|7e-165PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo]
JMSF021C17Sequence668013343 (3)ref|XP_004170962.1|9e-105PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like 767003790 (15)ref|XP_004134603.1|4e-170PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like

Alignment

This contig is upended


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rJMSF006H11-                                                             CTCCCATCN
JMSF021C17+                                                              CTCCCATCA
                      ____________________________________________________________
consensus                                                                CTCCCATCA
 
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rJMSF006H11-          ACACAACTTGGCATGCCCAGNATGGCCAAGATGCTCTNTGCGTGGATCAAGCTTGGGTTG
JMSF021C17+           ACACAACTTGGCATGCCCAG-ATGGCCAAGATGCTCTGTGCGTGGATCAAGCTTGGGTTG
                      ____________________________________________________________
consensus             ACACAACTTGGCATGCCCAGNATGGCCAAGATGCTCTGTGCGTGGATCAAGCTTGGGTTG
 
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rJMSF006H11-          CCCAAGTANTCAAGACCTCCCTCGCTGAANATCTGAGCTCCGGNCTTGAACCACACTGCC
JMSF021C17+           CCCAAGTAGTCAAGACCTCCCTCGCTGAAGATCTGAGCTCCGGCCTTGAACCACACTGCC
                      ____________________________________________________________
consensus             CCCAAGTAGTCAAGACCTCCCTCGCTGAAGATCTGAGCTCCGGCCTTGAACCACACTGCC
 
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rJMSF006H11-          TCGCCGAACTTCACGCCG                                          
JMSF021C17+           TCGCCGAACTTCACGCCGTTGCGGGACAACAGCTCCGGGAAAACGCATCCAAGGGCTCCC
                      ____________________________________________________________
consensus             TCGCCGAACTTCACGCCGTTGCGGGACAACAGCTCCGGGAAAACGCATCCAAGGGCTCCC
 
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JMSF021C17+           AGCATCGCCCATCTGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCTGGG
                      ____________________________________________________________
consensus             AGCATCGCCCATCTGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCTGGG
 
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JMSF021C17+           TCAGCAGAGAGGCCAGCAGTGTCCCATCCGTAGTCGCCGGGGAACTCTCCGGTCAGGTAG
                      ____________________________________________________________
consensus             TCAGCAGAGAGGCCAGCAGTGTCCCATCCGTAGTCGCCGGGGAACTCTCCGGTCAGGTAG
 
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JMSF009J03+                                                             GTACCATGGG
JMSF021C17+           CTTGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACACGGTCTGGGCCGTACCATGGG
                      ____________________________________________________________
consensus             CTTGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACACGGTCTGGGCCGTACCATGGG
 
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JMSF009J03+           CTGCCGGATGAAACAGGTTTAGCAGCGCCCTTCCTCATGGTAAACTTGGCGTTTCCGGTG
JMSF021C17+           CTGCCGGATGAAACAGGTTTAGCAGCGCCCTTCCTCATGGTAAACTTGGCGTTTCCGGTG
                      ____________________________________________________________
consensus             CTGCCGGATGAAACAGGTTTAGCAGCGCCCTTCCTCATGGTAAACTTGGCGTTTCCGGTG
 
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JMSF009J03+           ATTTCTGGTGTGGAAGGCGAGAGCTTCACTGCCTTTCCGGCGAAAGAAGGGGAAGAGAGA
JMSF021C17+           ATTTCTGGTGTGGAAGGCGAGAGCTTCACTGCCTTTCCGGCGAAAGAAGGGGAAGAGAGA
                      ____________________________________________________________
consensus             ATTTCTGGTGTGGAAGGCGAGAGCTTCACTGCCTTTCCGGCGAAAGAAGGGGAAGAGAGA
 
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JMSF009J03+           GCCATTGTAGCAGCTGCCATTGTACTTCTTTAGAAGTGAAATGCAAAGACTACACAATTG
JMSF021C17+           GCCATTGTAGCAGCTGCCATTGTACTTCTTTAGAAGTGAAATGCAAAGACTACACAATTG
                      ____________________________________________________________
consensus             GCCATTGTAGCAGCTGCCATTGTACTTCTTTAGAAGTGAAATGCAAAGACTACACAATTG
 
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JMSF009J03+           AAGGTGACAACAACTGCAAGAAGTGTGAAGATCGAGCTCCTTTAATTTGTGGCTTGATGT
JMSF021C17+           AAGGTGACAACAACTGCAAGAAGTGTGAAGATCGAGCTCCTTTAATTTGTGGCTTGATGT
                      ____________________________________________________________
consensus             AAGGTGACAACAACTGCAAGAAGTGTGAAGATCGAGCTCCTTTAATTTGTGGCTTGATGT
 
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JMSF009J03+           GTTTC                                                       
JMSF021C17+           GTTTCATGCTTCTTTTCACTACAGCCTATATATGCGACATGGATGCCCAATTGAAGGTCC
                      ____________________________________________________________
consensus             GTTTCATGCTTCTTTTCACTACAGCCTATATATGCGACATGGATGCCCAATTGAAGGTCC