Contig 013339:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027D13Sequence518013339 (2)ref|XP_010325528.1|8e-35PREDICTED: DNA repair endonuclease UVH1 [Solanum lycopersicum]666013731 (2)ref|XP_009797539.1|8e-114PREDICTED: DNA repair endonuclease UVH1-like [Nicotiana sylvestris]
JMSF020J11Sequence675013339 (2)ref|XP_010325528.1|5e-71PREDICTED: DNA repair endonuclease UVH1 [Solanum lycopersicum]807013731 (2)ref|XP_009792017.1|1e-151PREDICTED: DNA repair endonuclease UVH1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF020J11+                                                        CGAGNCCAAAGATGA
                      ____________________________________________________________
consensus                                                          CGAGNCCAAAGATGA
 
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JMSF020J11+           AGCTTTCTGAGCCAAAGGCATTTTAAGGTTCGTTCAGCCTTGGCGAAGCCGGAGACCATG
                      ____________________________________________________________
consensus             AGCTTTCTGAGCCAAAGGCATTTTAAGGTTCGTTCAGCCTTGGCGAAGCCGGAGACCATG
 
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JMSF020J11+           GCATGAGGGCGGTCCGAGAAAGCCCTAACATAGAGTGACCGGTTAGTCGAACGGATAATC
                      ____________________________________________________________
consensus             GCATGAGGGCGGTCCGAGAAAGCCCTAACATAGAGTGACCGGTTAGTCGAACGGATAATC
 
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JMFF027D13+                                GAGGTATCAGAGAGGGAGTGAGCGTTGAGGAGGAGGATT
JMSF020J11+           CTAACGATAAAAGCCTCGGTGGAGGTATCAGAGAGGGAGTGAGCGTTGAGGAGGAGGATT
                      ____________________________________________________________
consensus             CTAACGATAAAAGCCTCGGTGGAGGTATCAGAGAGGGAGTGAGCGTTGAGGAGGAGGATT
 
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JMFF027D13+           CCGGCTACGGCGGTAGTAGGCAGCCGGTGAGTGAGGAGGTCAACGATGAGAATACGCGCA
JMSF020J11+           CCGGCTACGGCGGTAGTAGGCAGCCGGTGAGTGAGGAGGTCAACGATGAGAATACGCGCA
                      ____________________________________________________________
consensus             CCGGCTACGGCGGTAGTAGGCAGCCGGTGAGTGAGGAGGTCAACGATGAGAATACGCGCA
 
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JMFF027D13+           GTGATGAAGAACACTCCGCCGGAAGTATAGAGCGACAGGCGCTGGTGCGCGGGGAGGTCG
JMSF020J11+           GTGATGAAGAACACTCCGCCGGAAGTATAGAGCGACAGGCGCTGGTGCGCGGGGAGGTCG
                      ____________________________________________________________
consensus             GTGATGAAGAACACTCCGCCGGAAGTATAGAGCGACAGGCGCTGGTGCGCGGGGAGGTCG
 
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JMFF027D13+           GAGGTAATCTCCGAGGGCAAATTGGGAACTTCACTTGTGCTGGGAACGGAGCTCTCGTAT
JMSF020J11+           GAGGTAATCTCCGAGGGCAAATTGGGAACTTCACTTGTGCTGGGAACGGAGCTCTCGTAT
                      ____________________________________________________________
consensus             GAGGTAATCTCCGAGGGCAAATTGGGAACTTCACTTGTGCTGGGAACGGAGCTCTCGTAT
 
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JMFF027D13+           TGGAGCGCGATCTCGAGATTTCGAACAATGGCGTGTCTCTGAGAAGGAGAGGCGGAGAGG
JMSF020J11+           TGGAGCGCGATCTCGAGATTTCGAACAATGGCGTGTCTCTGAGAAGGAGAGGCGGAGAGG
                      ____________________________________________________________
consensus             TGGAGCGCGATCTCGAGATTTCGAACAATGGCGTGTCTCTGAGAAGGAGAGGCGGAGAGG
 
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JMFF027D13+           ATGAGGAGGGAGCCCTGGGAAGAGTGATGGAGGAGGAGAAGAGAGGAGATGAGCTTGTGG
JMSF020J11+           ATGAGGAGGGAGCCCTGGGAAGAGTGATGGAGGAGGAGAAGAGAGGAGATGAGCTTGTGG
                      ____________________________________________________________
consensus             ATGAGGAGGGAGCCCTGGGAAGAGTGATGGAGGAGGAGAAGAGAGGAGATGAGCTTGTGG
 
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JMFF027D13+           AGGCCTAGGCCGGCGGAGAGGACGACTAAACCGCCGTTTTGGTCTTCGAGGAGTTCCGCT
JMSF020J11+           AGGCCTAGGCCGGCGGAGAGGACGACTAAACCGCCGTTTTGGTCTTCGAGGAGTTCCGCT
                      ____________________________________________________________
consensus             AGGCCTAGGCCGGCGGAGAGGACGACTAAACCGCCGTTTTGGTCTTCGAGGAGTTCCGCT
 
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JMFF027D13+           ACTATGTGCTCGTGAAATTGAACCATTTTCGTTTAAGTCCCAAGCAGAACCACGGTGGCT
JMSF020J11+           ACTATGTGCTCGTGAAATTGAACCATTTTCGTTTAAGTCCCAAGCAGAACCACGGTGGCT
                      ____________________________________________________________
consensus             ACTATGTGCTCGTGAAATTGAACCATTTTCGTTTAAGTCCCAAGCAGAACCACGGTGGCT
 
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JMFF027D13+           CTACGCCGCAGTCACGGGCTCTCGCGGCGGCGATGGAGAGAGAATTTTAGCGGCGCC   
JMSF020J11+           CTACGCCGCAGTCACGGGCTCTCGCGGCGGCGATGGAGAGAGAATTTTAGCGGCGCCGCC
                      ____________________________________________________________
consensus             CTACGCCGCAGTCACGGGCTCTCGCGGCGGCGATGGAGAGAGAATTTTAGCGGCGCCGCC