Contig 013337:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027A06Sequence490013337 (14)ref|XP_011026951.1|7e-74PREDICTED: 40S ribosomal protein S3a-2 [Populus euphratica]701013337 (14)ref|XP_011090682.1|8e-122PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMFF034E21Sequence572013337 (14)sp|P33444.4|RS3A_CATRO5e-94RecName: Full=40S ribosomal protein S3a; AltName: Full=CYC07 protein [Catharant709013337 (14)ref|XP_011090682.1|4e-130PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMSF004B09Sequence213013337 (14)gb|AFW89326.1|6e-05hypothetical protein ZEAMMB73_166147 [Zea mays]122001387 (33)
JMSF011O18Sequence248013337 (14)gb|ABK56834.1|3e-10RPS3 [Cymbidium hybrid cultivar]784013337 (14)ref|XP_011090682.1|3e-156PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMSF015N15Sequence501013337 (14)dbj|BAA05057.1|1e-72cyc07 [Catharanthus roseus]722013337 (14)ref|XP_011090682.1|7e-137PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMSF020E15Sequence257013337 (14)ref|XP_002283142.1|2e-09PREDICTED: 40S ribosomal protein S3a-1 [Vitis vinifera] sp|A5B4K1.1|RS3A1_VITVI 204013337 (14)ref|XP_002283142.1|1e-09PREDICTED: 40S ribosomal protein S3a-1 [Vitis vinifera] sp|A5B4K1.1|RS3A1_VITVI
JMSF025C18Sequence648013337 (14)sp|P33444.4|RS3A_CATRO6e-111RecName: Full=40S ribosomal protein S3a; AltName: Full=CYC07 protein [Catharant765013337 (14)ref|XP_011090682.1|1e-136PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMSF052O23Sequence610014792ref|NP_001266162.1|2e-105retinoblastoma-related protein 1 [Solanum lycopersicum] gb|AFD98848.1| retinobla922013337 (14)ref|XP_011090682.1|6e-157PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF004B09- GAGGGCAAGTTGAGCTGACGGAACTCTTTGCATCTCTCTACG
JMFF027A06- AGGGCAAGTTGAGCTGACGGAACTCTTTGCATCTCTCTACG
JMFF034E21- AGGGCAAGTTGAGCTGACGGAACTCTTTGCATCTCTCTACG
                      ____________________________________________________________
consensus GAGGGCAAGTTGAGCTGACGGAACTCTTTGCATCTCTCTACG
 
. : . : . : . : . : . :
JMSF004B09- CACCTTAGCTCCAAACCTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMFF027A06- CACCTTAGCTCCAAACCTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMSF011O18- CTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMFF034E21- CACCTTAGCTCCAAACCTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMSF015N15- CTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMSF025C18- CTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
rJMSF052O23+ CCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
                      ____________________________________________________________
consensus CACCTTAGCTCCAAACCTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
 
. : . : . : . : . : . :
JMSF004B09- AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMFF027A06- AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMSF011O18- AGAAA-GAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMFF034E21- AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMSF015N15- AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMSF025C18- AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
rJMSF011O18+ GTATGACATCA
rJMSF052O23+ AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
                      ____________________________________________________________
consensus AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
 
. : . : . : . : . : . :
JMSF004B09- AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCC
JMFF027A06- AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
JMSF011O18- AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
JMFF034E21- AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
JMSF015N15- AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
JMSF025C18- AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
rJMSF011O18+ AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
rJMSF052O23+ AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
                      ____________________________________________________________
consensus AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
 
. : . : . : . : . : . :
JMFF027A06- GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
JMSF011O18- GAACAAAGATTGCTTCA
JMFF034E21- GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
JMSF015N15- GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
JMSF025C18- GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMSF011O18+ GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMSF015N15+ TGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMSF025C18+ TGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMSF052O23+ GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMFF034E21+ CGTGTGTTTGAGGTGTCATTGGCTGACN
                      ____________________________________________________________
consensus GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
 
. : . : . : . : . : . :
JMFF027A06- TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
JMFF034E21- TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
JMSF015N15- TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
JMSF025C18- TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMSF011O18+ TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMSF015N15+ TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMSF025C18+ TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMFF027A06+ GTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMSF052O23+ TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMFF034E21+ TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
                      ____________________________________________________________
consensus TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
 
. : . : . : . : . : . :
JMFF027A06- GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
JMFF034E21- GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
JMSF015N15- GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
JMSF025C18- GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMSF011O18+ GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMSF015N15+ GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMSF025C18+ GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMFF027A06+ GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMSF052O23+ GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMFF034E21+ GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
                      ____________________________________________________________
consensus GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
 
. : . : . : . : . : . :
JMFF027A06- TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
JMFF034E21- TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
JMSF015N15- TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
JMSF025C18- TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMSF011O18+ TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMSF015N15+ TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMSF025C18+ TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMFF027A06+ TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMSF052O23+ TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMFF034E21+ TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
                      ____________________________________________________________
consensus TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
 
. : . : . : . : . : . :
JMFF027A06- ATACCTTGAGAATGTTTTGCATTGGCTTC
JMFF034E21- ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
JMSF015N15- ATACCTTGAGAATGNTTTGCATTGGCTTCA
JMSF025C18- ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMSF011O18+ ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMSF015N15+ ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMSF025C18+ ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMFF027A06+ ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMSF052O23+ ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMFF034E21+ ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
                      ____________________________________________________________
consensus ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
 
. : . : . : . : . : . :
JMFF034E21- CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGG
JMSF025C18- CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMSF011O18+ CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMSF015N15+ CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMSF025C18+ CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMFF027A06+ CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMSF052O23+ CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMFF034E21+ CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
                      ____________________________________________________________
consensus CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
 
. : . : . : . : . : . :
JMSF025C18- TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAG
rJMSF011O18+ TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMSF015N15+ TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMSF025C18+ TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMFF027A06+ TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMSF052O23+ TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMFF034E21+ TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
                      ____________________________________________________________
consensus TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
 
. : . : . : . : . : . :
rJMSF011O18+ TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMSF015N15+ TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMSF025C18+ TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMFF027A06+ TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMSF052O23+ TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMFF034E21+ TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
                      ____________________________________________________________
consensus TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
 
. : . : . : . : . : . :
rJMSF011O18+ GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMSF015N15+ GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMSF025C18+ GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMFF027A06+ GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMSF052O23+ GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMSF020E15+ GTTAATGGAGGTTCACG
rJMFF034E21+ GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
JMSF020E15- GTTAATGGAGGTTCACG
                      ____________________________________________________________
consensus GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
 
. : . : . : . : . : . :
rJMSF011O18+ GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
rJMSF015N15+ GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
rJMSF025C18+ GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGC
rJMFF027A06+ GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGC
rJMSF052O23+ GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
rJMSF020E15+ GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
rJMFF034E21+ GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
JMSF020E15- GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
                      ____________________________________________________________
consensus GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
 
. : . : . : . : . : . :
rJMSF011O18+ AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
rJMSF015N15+ AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
rJMSF052O23+ AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
rJMSF020E15+ AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
rJMFF034E21+ AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
JMSF020E15- AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
                      ____________________________________________________________
consensus AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
 
. : . : . : . : . : . :
rJMSF011O18+ CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTT
rJMSF015N15+ CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGAC
rJMSF052O23+ CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGACAGGC
rJMSF020E15+ CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGAC
rJMFF034E21+ CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGACAGGC
JMSF020E15- CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGACAGGC
                      ____________________________________________________________
consensus CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGACAGGC
 
. : . : . : . : . : . :
rJMSF052O23+ ATATCTTGATACTGAACC
rJMFF034E21+ ATATCTTGATACTGAACCATT
JMSF020E15- ATATCTTGATACTGAACCATTTGAACTTGATGATGAACCAGTTTATATTTAAAAAAAAAA
                      ____________________________________________________________
consensus ATATCTTGATACTGAACCATTTGAACTTGATGATGAACCAGTTTATATTTAAAAAAAAAA