Contig 013337:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027A06Sequence490013337 (14)ref|XP_011026951.1|7e-74PREDICTED: 40S ribosomal protein S3a-2 [Populus euphratica]701013337 (14)ref|XP_011090682.1|8e-122PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMFF034E21Sequence572013337 (14)sp|P33444.4|RS3A_CATRO5e-94RecName: Full=40S ribosomal protein S3a; AltName: Full=CYC07 protein [Catharant709013337 (14)ref|XP_011090682.1|4e-130PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMSF004B09Sequence213013337 (14)gb|AFW89326.1|6e-05hypothetical protein ZEAMMB73_166147 [Zea mays]122001387 (33)
JMSF011O18Sequence248013337 (14)gb|ABK56834.1|3e-10RPS3 [Cymbidium hybrid cultivar]784013337 (14)ref|XP_011090682.1|3e-156PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMSF015N15Sequence501013337 (14)dbj|BAA05057.1|1e-72cyc07 [Catharanthus roseus]722013337 (14)ref|XP_011090682.1|7e-137PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMSF020E15Sequence257013337 (14)ref|XP_002283142.1|2e-09PREDICTED: 40S ribosomal protein S3a-1 [Vitis vinifera] sp|A5B4K1.1|RS3A1_VITVI 204013337 (14)ref|XP_002283142.1|1e-09PREDICTED: 40S ribosomal protein S3a-1 [Vitis vinifera] sp|A5B4K1.1|RS3A1_VITVI
JMSF025C18Sequence648013337 (14)sp|P33444.4|RS3A_CATRO6e-111RecName: Full=40S ribosomal protein S3a; AltName: Full=CYC07 protein [Catharant765013337 (14)ref|XP_011090682.1|1e-136PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]
JMSF052O23Sequence610014792ref|NP_001266162.1|2e-105retinoblastoma-related protein 1 [Solanum lycopersicum] gb|AFD98848.1| retinobla922013337 (14)ref|XP_011090682.1|6e-157PREDICTED: 40S ribosomal protein S3a [Sesamum indicum]

Alignment

This contig is upended


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JMSF004B09-                             GAGGGCAAGTTGAGCTGACGGAACTCTTTGCATCTCTCTACG
JMFF027A06-                              AGGGCAAGTTGAGCTGACGGAACTCTTTGCATCTCTCTACG
JMFF034E21-                              AGGGCAAGTTGAGCTGACGGAACTCTTTGCATCTCTCTACG
                      ____________________________________________________________
consensus                               GAGGGCAAGTTGAGCTGACGGAACTCTTTGCATCTCTCTACG
 
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JMSF004B09-           CACCTTAGCTCCAAACCTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMFF027A06-           CACCTTAGCTCCAAACCTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMSF011O18-                           CTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMFF034E21-           CACCTTAGCTCCAAACCTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMSF015N15-                           CTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
JMSF025C18-                           CTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
rJMSF052O23+                                     CCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
                      ____________________________________________________________
consensus             CACCTTAGCTCCAAACCTCGACCATGGCCGTCGGAAAGAACAAGCGGATTTCCAAGGGGA
 
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JMSF004B09-           AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMFF027A06-           AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMSF011O18-           AGAAA-GAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMFF034E21-           AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMSF015N15-           AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
JMSF025C18-           AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
rJMSF011O18+                                                           GTATGACATCA
rJMSF052O23+          AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
                      ____________________________________________________________
consensus             AGAAAGGAGGAAAGAAGAAAGCAGCTGATCCCTTCGCCAAGAAGGACTGGTATGACATCA
 
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JMSF004B09-           AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCC         
JMFF027A06-           AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
JMSF011O18-           AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
JMFF034E21-           AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
JMSF015N15-           AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
JMSF025C18-           AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
rJMSF011O18+          AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
rJMSF052O23+          AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
                      ____________________________________________________________
consensus             AGGCTCCATCAGTTTTCACTGTAAGAAACATCGGAAAGACACTCGTTACCCGAACTCAGG
 
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JMFF027A06-           GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
JMSF011O18-           GAACAAAGATTGCTTCA                                           
JMFF034E21-           GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
JMSF015N15-           GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
JMSF025C18-           GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMSF011O18+          GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMSF015N15+                    TGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMSF025C18+                    TGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMSF052O23+          GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
rJMFF034E21+                                          CGTGTGTTTGAGGTGTCATTGGCTGACN
                      ____________________________________________________________
consensus             GAACAAAGATTGCTTCAGAAGGTCTCAAGCATCGTGTGTTTGAGGTGTCATTGGCTGACC
 
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JMFF027A06-           TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
JMFF034E21-           TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
JMSF015N15-           TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
JMSF025C18-           TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMSF011O18+          TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMSF015N15+          TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMSF025C18+          TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMFF027A06+                GTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMSF052O23+          TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
rJMFF034E21+          TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
                      ____________________________________________________________
consensus             TCCAAGGTGATGAGGACCATGCTTTCAGAAAGATTCGTCTCAGGGCTGAGGATGTTCAGG
 
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JMFF027A06-           GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
JMFF034E21-           GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
JMSF015N15-           GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
JMSF025C18-           GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMSF011O18+          GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMSF015N15+          GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMSF025C18+          GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMFF027A06+          GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMSF052O23+          GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
rJMFF034E21+          GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
                      ____________________________________________________________
consensus             GAAGAAATGTCCTTACAAACTTTTGGGGAATGAACTTCACTACAGATAAATTGAGGTCAT
 
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JMFF027A06-           TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
JMFF034E21-           TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
JMSF015N15-           TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
JMSF025C18-           TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMSF011O18+          TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMSF015N15+          TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMSF025C18+          TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMFF027A06+          TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMSF052O23+          TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
rJMFF034E21+          TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
                      ____________________________________________________________
consensus             TGGTGAAGAAGTGGCAATCACTGATTGAGGCACATGTTGATGTTAAAACAACAGACAGCT
 
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JMFF027A06-           ATACCTTGAGAATGTTTTGCATTGGCTTC                               
JMFF034E21-           ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
JMSF015N15-           ATACCTTGAGAATGNTTTGCATTGGCTTCA                              
JMSF025C18-           ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMSF011O18+          ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMSF015N15+          ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMSF025C18+          ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMFF027A06+          ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMSF052O23+          ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
rJMFF034E21+          ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
                      ____________________________________________________________
consensus             ATACCTTGAGAATGTTTTGCATTGGCTTCACTAAGAAGAGAGTAAACCAGCAAAAGAGAA
 
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JMFF034E21-           CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGG         
JMSF025C18-           CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMSF011O18+          CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMSF015N15+          CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMSF025C18+          CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMFF027A06+          CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMSF052O23+          CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
rJMFF034E21+          CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
                      ____________________________________________________________
consensus             CCTGCTATGCACAATCTAGCCAGATTCGTCAGATTCGCCGCAAGATGCGGGAGATTATGG
 
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JMSF025C18-           TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAG    
rJMSF011O18+          TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMSF015N15+          TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMSF025C18+          TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMFF027A06+          TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMSF052O23+          TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
rJMFF034E21+          TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
                      ____________________________________________________________
consensus             TTAACCATGCTCAGTCATGTGACCTCAAGGACTTGGTTCAGAAGTTCATTCCTGAGTCAA
 
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rJMSF011O18+          TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMSF015N15+          TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMSF025C18+          TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMFF027A06+          TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMSF052O23+          TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
rJMFF034E21+          TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
                      ____________________________________________________________
consensus             TTGGCCGTGATATTGAGAAGGCCACCTCAAGCATCTACCCTTTACAAAATGTGTTCATTC
 
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rJMSF011O18+          GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMSF015N15+          GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMSF025C18+          GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMFF027A06+          GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMSF052O23+          GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
rJMSF020E15+                                                     GTTAATGGAGGTTCACG
rJMFF034E21+          GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
JMSF020E15-                                                      GTTAATGGAGGTTCACG
                      ____________________________________________________________
consensus             GCAAGGTCAAGATCCTAAAGGCTCCCAAGTTTGATCTTGGCAAGTTAATGGAGGTTCACG
 
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rJMSF011O18+          GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
rJMSF015N15+          GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
rJMSF025C18+          GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGC                 
rJMFF027A06+          GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGC                 
rJMSF052O23+          GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
rJMSF020E15+          GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
rJMFF034E21+          GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
JMSF020E15-           GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
                      ____________________________________________________________
consensus             GTGACTACACTGAAGATGTTGGCACAAAGCTGGACAGGCCTGCAGATGAGCCCGTGGCTG
 
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rJMSF011O18+          AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
rJMSF015N15+          AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
rJMSF052O23+          AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
rJMSF020E15+          AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
rJMFF034E21+          AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
JMSF020E15-           AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
                      ____________________________________________________________
consensus             AGGCAACTGAACCTGTTGTTGGAGCTTGATTGTGAATTTTGTGTCTTGTGCGTTTCTTGC
 
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rJMSF011O18+          CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTT        
rJMSF015N15+          CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGAC    
rJMSF052O23+          CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGACAGGC
rJMSF020E15+          CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGAC    
rJMFF034E21+          CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGACAGGC
JMSF020E15-           CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGACAGGC
                      ____________________________________________________________
consensus             CTATTTATATGCTTTAATGGACCTTAGATCTTTGGCGGCTTAGGAAGAGTTTTGACAGGC
 
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rJMSF052O23+          ATATCTTGATACTGAACC                                          
rJMFF034E21+          ATATCTTGATACTGAACCATT                                       
JMSF020E15-           ATATCTTGATACTGAACCATTTGAACTTGATGATGAACCAGTTTATATTTAAAAAAAAAA
                      ____________________________________________________________
consensus             ATATCTTGATACTGAACCATTTGAACTTGATGATGAACCAGTTTATATTTAAAAAAAAAA