| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031A23 | Sequence | 649 | 013333 (7) | ref|XP_009765293.1| | 1e-90 | PREDICTED: stem-specific protein TSJT1-like [Nicotiana sylvestris] | 772 | 013333 (7) | ref|XP_009765293.1| | 2e-109 | PREDICTED: stem-specific protein TSJT1-like [Nicotiana sylvestris] |
| JMFF050C03 | Sequence | 153 | 013333 (7) | 163 | 013333 (7) | ||||||
| JMFS159C07 | Sequence | 506 | 013333 (7) | ref|XP_009765293.1| | 1e-66 | PREDICTED: stem-specific protein TSJT1-like [Nicotiana sylvestris] | |||||
| JMSF018B03 | Sequence | 261 | 013333 (7) | ref|XP_009597194.1| | 2e-09 | PREDICTED: stem-specific protein TSJT1-like [Nicotiana tomentosiformis] | 827 | 015012 | ref|XP_011096244.1| | 6e-24 | PREDICTED: stem-specific protein TSJT1-like [Sesamum indicum] ref|XP_011096245.1 |
| JMSF019J19 | Sequence | 481 | 013333 (7) | ref|XP_009765293.1| | 1e-49 | PREDICTED: stem-specific protein TSJT1-like [Nicotiana sylvestris] | 788 | 009954 (5) | dbj|BAA13440.1| | 8e-99 | calcium dependent protein kinase [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
rJMFF031A23- ATTGAT
____________________________________________________________
consensus ATTGAT
. : . : . : . : . : . :
rJMFF031A23- TACATTCAAAGAAACAAAAGTACATTTTGTGAAACAAGTACTATAAACCTCAATCAAAAC
____________________________________________________________
consensus TACATTCAAAGAAACAAAAGTACATTTTGTGAAACAAGTACTATAAACCTCAATCAAAAC
. : . : . : . : . : . :
rJMFF031A23- AAAAGAATCAAAGGAAACACTACCTAATCAAACTCAAAACAGAATTTTTGTTGTTGCTGC
____________________________________________________________
consensus AAAAGAATCAAAGGAAACACTACCTAATCAAACTCAAAACAGAATTTTTGTTGTTGCTGC
. : . : . : . : . : . :
rJMFF031A23- ATGCCATCAAAGAGTCCAGTTAGCTTCACTTCCAACCCTTGGCATTATTGTGTTAACTAC
____________________________________________________________
consensus ATGCCATCAAAGAGTCCAGTTAGCTTCACTTCCAACCCTTGGCATTATTGTGTTAACTAC
. : . : . : . : . : . :
rJMFF031A23- CTTGGAGTAATGATCAACTTTGAAGTCAGCTCCACACATTGCTCCTTCACTGTCAACTCT
____________________________________________________________
consensus CTTGGAGTAATGATCAACTTTGAAGTCAGCTCCACACATTGCTCCTTCACTGTCAACTCT
. : . : . : . : . : . :
rJMFF031A23- TGCCATTGCCTTCATCTGCTTCATTGGATGCTCAAAGCTCATCAACCCTCTTTCACTGTG
____________________________________________________________
consensus TGCCATTGCCTTCATCTGCTTCATTGGATGCTCAAAGCTCATCAACCCTCTTTCACTGTG
. : . : . : . : . : . :
rJMFF031A23- ATACATGCAACCATGGGGGAATGGGGCGAATGACTTGGCGCAACTTGCTTTCATGAGTGC
JMFF031A23+ TTGGCGCAACTTGCTTTCATGAGTGC
____________________________________________________________
consensus ATACATGCAACCATGGGGGAATGGGGCGAATGACTTGGCGCAACTTGCTTTCATGAGTGC
. : . : . : . : . : . :
rJMFF031A23- CACATTGTCAGAGATCATTATAGATCCATCCTCTGCAATGCCCCAGTAGAGCTTCACTGA
JMFF031A23+ CACATNGTCAGAGATCATTATAGATCCATCCTCTGCAATGCCCCAGTAGAGCTTCACTGA
____________________________________________________________
consensus CACATTGTCAGAGATCATTATAGATCCATCCTCTGCAATGCCCCAGTAGAGCTTCACTGA
. : . : . : . : . : . :
rJMFF031A23- TTCATTAGCACCTAGAGCAGCAAAAACTGTTCCAGCTTTGTGATCAAAAATCACAAACCC
JMFF031A23+ TTCATTAGCACCTAGAGCAGCAAAAACTGTTCCAGCTTTGTGATCAAAAATCACAAACCC
JMFS159C07+ AAACCC
____________________________________________________________
consensus TTCATTAGCACCTAGAGCAGCAAAAACTGTTCCAGCTTTGTGATCAAAAATCACAAACCC
. : . : . : . : . : . :
rJMFF031A23- AAAGCTGCCTTCCAGATCCTTGAGGACTTGATGGGCAGGGTAGGGGCCTCTATCTCGGAG
JMFF031A23+ AAAGCTGCCTTCCAGATCCTTGAGGACTTGATGGGCAGGGTAGGGGCCTCTATCTCGGAG
JMFS159C07+ AAAGCTGCCTTCCAGATCCTTAAGGACTTGATGTGCAGGGAAGGGGCCTCTATCTCTGAG
____________________________________________________________
consensus AAAGCTGCCTTCCAGATCCTTGAGGACTTGATGGGCAGGGTAGGGGCCTCTATCTCGGAG
. : . : . : . : . : . :
rJMFF031A23- GGTCTGATATGCTTGGGTCACAAGCATGGCCTCATTGGCCCCCTTTGATAACCCATATTG
JMFF031A23+ GGTCTGATATGCTTGGGTCACAAGCATGGCCTCATTGGCCCCCTTTGATAACCCATATTG
JMFS159C07+ AGTCCTATATGCTTCAGTCACAAGCATGGCCTCATTAGCCCCCTTGGATAGCCCATATTG
JMSF019J19+ ATATGCTTCAGTCACAAGCATGGCCTCATTAGCCCCCTTGGATAGCCCATATTG
____________________________________________________________
consensus GGTCTGATATGCTTGGGTCACAAGCATGGCCTCATTGGCCCCCTTTGATAACCCATATTG
. : . : . : . : . : . :
rJMFF031A23- CCTGTTGAGTGAACACAGATTGTGCAGGCTCCCCAAGAAGATGCAGTACATGTCATTCAC
JMFF031A23+ CCTGTTGAGTGAACACAGATTGTGCAGGCTCCCCAAGAAGATGCAGTACATGTCATTCAC
JMFS159C07+ CCTGTTGAGTGAACACAGATTGTGCAGGCTCCCCAGGAAGATGCAGTATATGTCATTCAC
JMSF019J19+ CCTGTTGAGTGAACACAGATTGTGCAGGCTCCCCAGGAAGATGCAGTATATGTCATTCAC
____________________________________________________________
consensus CCTGTTGAGTGAACACAGATTGTGCAGGCTCCCCAAGAAGATGCAGTACATGTCATTCAC
. : . : . : . : . : . :
rJMFF031A23- CCCACAGAACAACCTCTGCTG
JMFF031A23+ CCCACAGAACAACCTCTGCTGTACGAGGTTTGAACAAGGTTGAGCAGAGGAATATGCCAG
JMFS159C07+ CCCACAGAACAGCCTCTGCTGCTTCAGATTTGAGCAAGCTTGAGCA---GAATAGGCCAG
JMSF019J19+ CCCACAGAACAGCCTCTGCTGCTTCAGATTTGAGCAAGCTTGAGCA---GAATAGGCCAG
____________________________________________________________
consensus CCCACAGAACAACCTCTGCTGCTTCAGATTTGAGCAAGCTTGAGCA---GAATAGGCCAG
. : . : . : . : . : . :
JMFF031A23+ AAATGCCTTATCACCAAATCCTAGAGAAAACCCATTGCTGGGATTCGCAGATAAGAAATT
JMFS159C07+ AAATGCCTTTTCACCAAATCCCAGAGAAAACCCATTGCTCTTATTTGCAGACAAGAAATT
JMSF018B03+ GCAGACAAGAAATT
JMSF019J19+ AAATGCCTTTTCACCAAATCCCAGAGAAAACCCATTGCTCTTATTTGCAGACAAGAAATT
____________________________________________________________
consensus AAATGCCTTTTCACCAAATCCCAGAGAAAACCCATTGCTCTTATTTGCAGACAAGAAATT
. : . : . : . : . : . :
JMFF031A23+ GTTGATAGCCTCTTGAGGTGGGACAACCTTCATAGATGACCCCAATGAGGCTGGGCTACT
JMFS159C07+ GGTGATGGCCTCTTGTGGTGGCACAAGCTCCATAGATGCCTGCGATGGGGCTGGGCTGTT
JMSF018B03+ GGTGATGGCCTCTTGTGGTGGCACAAGCTCCATAGATGCCTGCGATGGGGCTGGGCTGTT
JMSF019J19+ GGTGATGGCCTCTTGTGGTGGCACAAGCTCCATAGATGCCTGCGATGGGGCTGGGCTGTT
____________________________________________________________
consensus GGTGATGGCCTCTTGTGGTGGCACAAGCTCCATAGATGCCTGCGATGGGGCTGGGCTGTT
. : . : . : . : . : . :
JMFF031A23+ TAGCTCCTTTGGTGGATTCACCAACTCTTTCTGGAAAATTGCCAACATTTTCTTCTTCTT
JMFS159C07+ CAGCTCCTTTGGTGGATCCACCAATCCTTTCTGGAAAATTGCCAACATTTTCTTCTTCTT
JMSF018B03+ CAGCTCCTTTGGTGGATCCACCAATCCTTTCTGGAAAATTGCCAACATTTTCTTCTTCTT
JMFF050C03+ CCAATCCTTTCTGGAAAATTGCCAACATTT--TTCTTCTT
rJMFF050C03- GGATCCACCAATCCTTTCTGGAAAATTGCCAACATTT--TTCTTCTT
JMSF019J19+ CAGCTCCTTTGGTGGATCCACCAATCCTTTCTGGAAAATTGCCAACATTTTCTTCTTCTT
____________________________________________________________
consensus CAGCTCCTTTGGTGGATCCACCAATCCTTTCTGGAAAATTGCCAACATTTTCTTCTTCTT
. : . : . : . : . : . :
JMFS159C07+ CTTCTTCTCCTTCTTGTTCTTGCAATTCAAATGAGAAAACTTAACGCTCTGAAAGGAAAC
JMSF018B03+ CTTCTTCTCCTTCTTGTTCTTGCAATTCAAATGAGAAAACTTAACGCTCTGAAAGGAAAC
JMFF050C03+ CTTCTTCTCCTTCTTGTTCTTGCAATTCAAATGAGAAAACTTAACGCTCTGAAAGGAAAC
rJMFF050C03- CTTCTTCTCCTTCTTGTTCTTGCAATTCAAATGAGAAAACTTAACGCTCTGAAAGGAAAC
JMSF019J19+ CTTCTTCTCCTTCTTGTTCTTGCAATTCAAATGAGAAAACTTAACGCTCTGAAAGGAAAC
____________________________________________________________
consensus CTTCTTCTCCTTCTTGTTCTTGCAATTCAAATGAGAAAACTTAACGCTCTGAAAGGAAAC
. : . : . : . : . : . :
JMFS159C07+ AAAAGAAACGTGTGTTTGTCTTC
JMSF018B03+ AAAAGAAACGTGTGTCTGTCTTCTTTGTGAATTGTGATTTGTGATGACTGAATAT
JMFF050C03+ AAAAGAAACGTGTGTTTGTCTTCTTTGTGAATTGTGATTTGTGATGACTGAATAT
rJMFF050C03- AAAAGAAACGTGTGTTTGTCTTCTTTGTGAATTGTGATTTGTGATGACTGAATAT
JMSF019J19+ AAAAGAAACGTGTGTTTGTCTTCTTTGTGAATTGTGATTTGTGATGACTGAATATGGTCC
____________________________________________________________
consensus AAAAGAAACGTGTGTTTGTCTTCTTTGTGAATTGTGATTTGTGATGACTGAATATGGTCC