| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009A09 | Sequence | 548 | 013328 (5) | 697 | 002001 (5) | ref|XP_006359278.1| | 1e-63 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||
| JMFF023N11 | Sequence | 533 | 013328 (5) | 749 | 002001 (5) | ref|XP_006359278.1| | 1e-74 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||
| JMSF018M05 | Sequence | 347 | 013328 (5) | ||||||||
| JMSF019A13 | Sequence | 457 | 013328 (5) | 764 | 002001 (5) | ref|XP_006359278.1| | 6e-95 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||
| JMSF029L03 | Sequence | 638 | 013328 (5) | 732 | 002001 (5) | ref|XP_006359278.1| | 8e-86 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||
This contig is upended
. : . : . : . : . : . :
JMSF029L03+ TCTTCAACAATGTCATCATTGTACAATTCATTTTGGCTCCTGGC
____________________________________________________________
consensus TCTTCAACAATGTCATCATTGTACAATTCATTTTGGCTCCTGGC
. : . : . : . : . : . :
JMFF009A09+ CTAGGACAAGTGAAGGTGGGAAGGATGA
JMFF023N11+ GTGGGAAGGATGA
JMSF029L03+ CTTTGATGAAGATGTTGAGGCTTCGGGTTTTTCTAGGACAAGTGAAGGTGGGAAGGATGA
____________________________________________________________
consensus CTTTGATGAAGATGTTGAGGCTTCGGGTTTTTCTAGGACAAGTGAAGGTGGGAAGGATGA
. : . : . : . : . : . :
JMFF009A09+ TTCATGGGAACATAAGGGAGGAAGGAGAGAATGTGAAGAAGTATAGAAGAATCTAAAGGG
JMFF023N11+ TTCATGGGAACATAAGGGAGGAAGGAGAGAATGTGAAGAAGTATAGAAGAATCTAAAGGG
JMSF029L03+ TTCATGGGAACATAAGGGAGGAAGGAGAGAATGTGAAGAAGTATAGAAGAATCTAAAGGG
____________________________________________________________
consensus TTCATGGGAACATAAGGGAGGAAGGAGAGAATGTGAAGAAGTATAGAAGAATCTAAAGGG
. : . : . : . : . : . :
JMFF009A09+ AAAAGGAAGGTGAAATTTCATGGCATTTTGATTCTGCGAATGATAAAAGAGATGAAATTT
JMFF023N11+ AAAAGGAAGGTGAAATTTCATGGCATTTTGATTCTGCGAATGATAAAAGAGATGAAATTT
JMSF019A13+ TCATGGCATTTTGATTCTGCGAATGATAAAAGAGATGAAATTT
JMSF029L03+ AAAAGGAAGGTGAAATTTCATGGCATTTTGATTCTGCGAATGATAAAAGAGATGAAATTT
____________________________________________________________
consensus AAAAGGAAGGTGAAATTTCATGGCATTTTGATTCTGCGAATGATAAAAGAGATGAAATTT
. : . : . : . : . : . :
JMFF009A09+ GGAGCTCGAGAACGATGAAAAGCAACAGTGATTCATTTCTTCTCCCTATACAATTTCTAT
JMFF023N11+ GGAGCTCGAGAACGATGAAAAGCAACAGTGATTCATTTCTTCTCCCTATACAATTTCTAT
JMSF019A13+ GGAGCTCGAGAACGATGAAAAGCAACAGTGATTCATTTCTTCTCCCTATACAATTTCTAT
JMSF029L03+ GGAGCTCGAGAACGATGAAAAGCAACAGTGATTCATTTCTTCTCCCTATACAATTTCTAT
____________________________________________________________
consensus GGAGCTCGAGAACGATGAAAAGCAACAGTGATTCATTTCTTCTCCCTATACAATTTCTAT
. : . : . : . : . : . :
JMFF009A09+ AATTAGATCAAACTCTATCTTTATAAGGCAGCTCCGTAGAAAAGCGAGTTTTTTCTAAGG
JMFF023N11+ AATTAGATCAAACTCTATCTTTATAAGGCAGCTCCGTAGAAAAGCGAGTTTTTTCTAAGG
JMSF019A13+ AATTAGATCAAACTCTATCTTTATAAGGCAGCTCCGTAGAAAAGCGAGTTTTTTCTAAGG
JMSF029L03+ AATTAGATCAAACTCTATCTTTATAAGGCAGCTCCGTAGAAAAGCGAGTTTTTTCTAAGG
____________________________________________________________
consensus AATTAGATCAAACTCTATCTTTATAAGGCAGCTCCGTAGAAAAGCGAGTTTTTTCTAAGG
. : . : . : . : . : . :
JMFF009A09+ GAAGAACGATGAGTTATTTCAAATTGTCACCAACCTCATTTCACGTAAGAAGGACGAAAT
JMFF023N11+ GAAGAACGATGAGTTATTTCAAATTGTCACCAACCTCATTTCACGTAAGAAGGACGAAAT
JMSF019A13+ GAAGAACGATGAGTTATTTCAAATTGTCACCAACCTCATTTCACGTAAGAAGGACGAAAT
JMSF029L03+ GAAGAACGATGAGTTATTTCAAATTGTCACCAACCTCATTTCACGTAAGAAGGACGAAAT
JMSF018M05+ TTATTTCAAATTGTCACCAACCTCATTTCACGTAAGAANGACGAAAT
____________________________________________________________
consensus GAAGAACGATGAGTTATTTCAAATTGTCACCAACCTCATTTCACGTAAGAAGGACGAAAT
. : . : . : . : . : . :
JMFF009A09+ GGCATCTATTTCTTTCCCCTTCAGTGAGACTTTAGTTGCAACCCTTTTAACTAAAGAGCA
JMFF023N11+ GGCATCTATTTCTTTCCCCTTCAGTGAGACTTTAGTTGCAACCCTTTTAACTAAAGAGCA
JMSF019A13+ GGCATCTATTTCTTTCCCCTTCAGTGAGACTTTAGTTGCAACCCTTTTAACTAAAGAGCA
JMSF029L03+ GGCATCTATTTCTTTCCCCTTCAGTGAGACTTTAGTTGCAACCCTTTTAACTAAAGAGCA
JMSF018M05+ GGCATCTATTTCTTTCCCCNTCAGTGAGACTTTAGTTGCAACCCTTTTAACTAAAGAGCA
____________________________________________________________
consensus GGCATCTATTTCTTTCCCCTTCAGTGAGACTTTAGTTGCAACCCTTTTAACTAAAGAGCA
. : . : . : . : . : . :
JMFF009A09+ TAAATAACTTATAGAATGCCAAGAGCGGAAAATTTATCTACCATTTGAGAAGATTCTACT
JMFF023N11+ TAAATAACTTATAGAATGCCAAGAGCGGAAAATTTATCTACCATTTGAGAAGATTCTACT
JMSF019A13+ TAAATAACTTATAGAATGCCAAGAGCGGAAAATTTATCTACCATTTGAGAAGATTCTACT
JMSF029L03+ TAAATAACTTATAGAATGCCAAGAGCGGAAAATTTATCTACCATTTGAGAAGATTCTACT
JMSF018M05+ TANATAACTTATAGAATGCCAAGAGCGGAAAATTTATCTACCATTTGAGAAGATTCTNCT
____________________________________________________________
consensus TAAATAACTTATAGAATGCCAAGAGCGGAAAATTTATCTACCATTTGAGAAGATTCTACT
. : . : . : . : . : . :
JMFF009A09+ ATGCATAGTCTTCAGTAACAAGAACAACATGAAGAGGACTTCTCCAAAGCAAGATTATCC
JMFF023N11+ ATGCATAGTCTTCAGTAACAAGAACAACATGAAGAGGACTTCTCCAAAGCAAGATTATCC
JMSF019A13+ ATGCATAGTCTTCAGTAACAAGAACAACATGAAGAGGACTTCTCCAAAGCAAGATTATCC
JMSF029L03+ ATGCATAGTCTTCAGTAACAAGAACAACATGAAGAGGACTTCTCCAAAGCAAGATTATCC
JMSF018M05+ GTGCATNGTCTTCAGTAACANGAACAACATGAAGNGGNCTTCTCCAAAGCAAGATNATCC
____________________________________________________________
consensus ATGCATAGTCTTCAGTAACAAGAACAACATGAAGAGGACTTCTCCAAAGCAAGATTATCC
. : . : . : . : . : . :
JMFF009A09+ AATTGTGATTTAGCAGTCTCCGAGAAAAAAAGTTCC
JMFF023N11+ AATTGTGATTTAGCAGTCTCCGAGAAAAAAAGTTCC
JMSF019A13+ AATTGTGATTTAGCAGTCTCCGAGAAAAAAAGTTCCCGACAAACTGAAACTGCC
JMSF029L03+ AATTGTGATTTAGCAGTCTCCGAGAAAAAAAGTTCCCGACAAACTGAAACTGCC
JMSF018M05+ AANTGTGATTTAGCAGTNTCCGAGAAAAAAAGTTCCNGACAAACTGAAACTGCCCATCAT
____________________________________________________________
consensus AATTGTGATTTAGCAGTCTCCGAGAAAAAAAGTTCCCGACAAACTGAAACTGCCCATCAT
. : . : . : . : . : . :
JMSF018M05+ ACGAATCNTTAANTTCNNCTTTACGAAATCAAAGCGTCTCCCAAAAAAATCAAATTTTCC
____________________________________________________________
consensus ACGAATCNTTAANTTCNNCTTTACGAAATCAAAGCGTCTCCCAAAAAAATCAAATTTTCC