Contig 013327:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021B17Sequence511013327 (5)ref|XP_009606335.1|1e-66PREDICTED: 3-ketoacyl-CoA synthase 1 [Nicotiana tomentosiformis]698009691 (4)ref|XP_006361008.1|1e-72PREDICTED: 3-ketoacyl-CoA synthase 1-like [Solanum tuberosum]
JMFF038J21Sequence452013327 (5)ref|XP_009606335.1|9e-40PREDICTED: 3-ketoacyl-CoA synthase 1 [Nicotiana tomentosiformis]746009691 (4)ref|XP_006361008.1|1e-79PREDICTED: 3-ketoacyl-CoA synthase 1-like [Solanum tuberosum]
JMFS001H08Sequence475013327 (5)ref|XP_009606335.1|2e-29PREDICTED: 3-ketoacyl-CoA synthase 1 [Nicotiana tomentosiformis]
JMFS106H02Sequence631013327 (5)ref|XP_009606335.1|2e-50PREDICTED: 3-ketoacyl-CoA synthase 1 [Nicotiana tomentosiformis]
JMSF018J22Sequence202013327 (5)707009691 (4)ref|XP_006361008.1|1e-77PREDICTED: 3-ketoacyl-CoA synthase 1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF021B17+                                            TGAGGCAAGTAGGTTTCGTCTCCCAGA
                      ____________________________________________________________
consensus                                              TGAGGCAAGTAGGTTTCGTCTCCCAGA
 
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JMFF021B17+           CCGGACCGGTGAGCTATCTTCTTCTGAAAACCAACAGTATCACCGGAAAACGCGCCGTTT
                      ____________________________________________________________
consensus             CCGGACCGGTGAGCTATCTTCTTCTGAAAACCAACAGTATCACCGGAAAACGCGCCGTTT
 
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JMFF021B17+           TCCTCGGTCATTTTCAAGAACGAGTCGACCGAGATTTTCCGTTCGTCTTCCGGTTTATAA
JMFF038J21+                              ACGAGTCGACCGAGATTTTCCGTTCGTCTTCCGGTTTATAA
JMFS106H02+                      TTTCAAGAACGAGTCGACCGAGATTTTCCGTTCGTCTTCCGGTTTATAA
                      ____________________________________________________________
consensus             TCCTCGGTCATTTTCAAGAACGAGTCGACCGAGATTTTCCGTTCGTCTTCCGGTTTATAA
 
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JMFF021B17+           CAGGCGAAATCCACCAAGTAGACCGGTCTGGGACGGCGGGCCAAATAAATGGCTAGAAAG
JMFF038J21+           CAGGCGAAATCCACCAAGTAGACCGGTCTGGGACGGCGGGCCAAATAAATGGCTAGAAAG
JMFS106H02+           CAGGCGAAATCCACCAAGTAGACCGGTCTGGGACGGCGGGCCAAATAAATGGCTAGAAAG
                      ____________________________________________________________
consensus             CAGGCGAAATCCACCAAGTAGACCGGTCTGGGACGGCGGGCCAAATAAATGGCTAGAAAG
 
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JMFF021B17+           AAGAGCAGAACCACCAGA-CCGGTAACGCCGGTGGCGGTGTCCACAATCAAACTCAGACT
JMFF038J21+           AAGAGCAGAACCACCAGACCCGGTAACGCCGGTGGCGGTGTCCACAATCAAACTCAGACT
JMFS106H02+           AAGAGCAGAACCACCAGA-CCGGTAACGCCGGTGGCGGTGTCCACAATCAAACTCAGACT
                      ____________________________________________________________
consensus             AAGAGCAGAACCACCAGA-CCGGTAACGCCGGTGGCGGTGTCCACAATCAAACTCAGACT
 
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JMFF021B17+           TGGGCTGCTATAAAACTCAGAAAAGCGGCGGAATCTGAGACCGGTGAGTTGAAACGCCGT
JMFF038J21+           TGGGCTGCTATAAAACTCAGAAAAGCGGCGGAATCTGAGACCGGTGAGTTGAAACGCCGT
JMFS106H02+           TGGGCTGCTATAAAACTCAGAAAAGCGGCGGAATCTGAGACCGGTGAGTTGAAACGCCGT
JMFS001H08+                  CTATAAAACTCAGAAAAGCGGCGGAATCTGAGACCGGTGAGTTGAAACGCCGT
                      ____________________________________________________________
consensus             TGGGCTGCTATAAAACTCAGAAAAGCGGCGGAATCTGAGACCGGTGAGTTGAAACGCCGT
 
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JMFF021B17+           GACGCCAAACAGCGCCGCAATCATGGCCAGCGAGGTGACCGGGTAATTGCAAGAATACCC
JMFF038J21+           GACGCCAAACAGCGCCGCAATCATGGCCAGCGAGGTGACCGGGTAATTGCAAGAATACCC
JMFS106H02+           GACGCCAAACAGCGCCGCAATCATGGCCAGCGAGGTGACCGGGTAATTGCAAGAATACCC
JMFS001H08+           GACGCCAAACAGCGCCGCAATCATGGCCAGCGAGGTGACCGGGTAATTGCAAGAATACCC
                      ____________________________________________________________
consensus             GACGCCAAACAGCGCCGCAATCATGGCCAGCGAGGTGACCGGGTAATTGCAAGAATACCC
 
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JMFF021B17+           ATACCCTAATTTCACATACTTTAGCTTCACGGATTGAAGAAAATCCGGCAAGCGTTGCCG
JMFF038J21+           ATACCCTAATTTCACATACTTTAGCTTCACGGATTGAAGAAAATCCGGCAAGCGTTGCCG
JMFS106H02+           ATACCCTAATTTCACATACTTTAGCTTCACGGATTGAAGAAAATCCGGCAAGCGTTGCCG
JMFS001H08+           ATACCCTAATTTCACATACTTTAGCTTCACGGATTGAAGAAAATCCGGCAAGCGTTGCCG
                      ____________________________________________________________
consensus             ATACCCTAATTTCACATACTTTAGCTTCACGGATTGAAGAAAATCCGGCAAGCGTTGCCG
 
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JMFF021B17+           GATCTTGATGACGACGGAGGATGAATCTTTGAAATCCATCTCAGCCGTCAGTCTCTCCTT
JMFF038J21+           GATCTTGATGACGACGGAGGATGAATCTTTGAAATCCATCTCAGCCGTCAGTCTCTCCTT
JMFS106H02+           GATCTTGATGACGACGGAGGATGAATCTTTGAAATCCATCTCAGCCGTCAGTCTCTCCTT
JMFS001H08+           GATCTTGATGACGACGGAGGATGAATCTTTGAAATCCATCTCAGCCGTCAGTCTCTCCTT
                      ____________________________________________________________
consensus             GATCTTGATGACGACGGAGGATGAATCTTTGAAATCCATCTCAGCCGTCAGTCTCTCCTT
 
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JMFF021B17+           CTCC                                                        
JMFF038J21+           CTCCATCTCTATGCTGTCTTTGGCAGCCATATATGATATGAT                  
JMFS106H02+           CTCCATCTCTATGCTGTCTTTGGCAGCCATATATGATATGATATGATAGATATATCTCAG
JMFS001H08+           CTCCATCTCTATGCTGTCTTTGGCAGCCATATATGATATGATATGATAGATATATCTCAG
                      ____________________________________________________________
consensus             CTCCATCTCTATGCTGTCTTTGGCAGCCATATATGATATGATATGATAGATATATCTCAG
 
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JMFS106H02+           CTCCGCTCCTAATAAATATATACAAATATATTTTATACAAATATATATTGCAGATCCAGG
JMFS001H08+           CTCCGCTCCTAATAAATATATACAAATATATTTTATACAAATATATATTGCAGATCCAGG
JMSF018J22+                                                 AAATATATATTGCAGATCCAGG
                      ____________________________________________________________
consensus             CTCCGCTCCTAATAAATATATACAAATATATTTTATACAAATATATATTGCAGATCCAGG
 
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JMFS106H02+           GAAAGAAGGAAGGGAAGTGTGTGGGAGAGGGTATAGTCTCAGAGAAGCTGAACTAATTGA
JMFS001H08+           GAAAGAAGGAAGGGAAGTGTGTGGGAGAGGGTATAGTCTCAGAGAAGCTGAACTAATTGA
JMSF018J22+           GAAAGAAGGAAGGGAAGTGTGTGGGAGAGGGTATAGTCTCAGAGAAGCTGAACTAATTGA
                      ____________________________________________________________
consensus             GAAAGAAGGAAGGGAAGTGTGTGGGAGAGGGTATAGTCTCAGAGAAGCTGAACTAATTGA
 
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JMFS106H02+           TGAAGAAAAAAGAGAAGAAAAGAGAAGAGAAGAAAGAAG                     
JMFS001H08+           TGAAGAAAAAAGAGAAGAAAAGAGAAGAGAAGAAAGAAGGTTT                 
JMSF018J22+           TGAAGAAAAAAGAGAAGAAAAGAGAAGAGAAGAAAGAAGGTTTGAAAAGGGTAGTTGGAG
                      ____________________________________________________________
consensus             TGAAGAAAAAAGAGAAGAAAAGAGAAGAGAAGAAAGAAGGTTTGAAAAGGGTAGTTGGAG
 
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JMSF018J22+           CTTGATGAGAAAATTAAAGCCCCTACTTATATATTACATATGTGCATTGGGAAGCAACTC
                      ____________________________________________________________
consensus             CTTGATGAGAAAATTAAAGCCCCTACTTATATATTACATATGTGCATTGGGAAGCAACTC