Contig 013326:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041N05Sequence660013326 (4)gb|AAT39931.2|8e-68Homeobox-leucine zipper protein HAT7 , putative [Solanum demissum]598013326 (4)ref|XP_002520111.1|6e-15homeobox protein, putative [Ricinus communis] gb|EEF42166.1| homeobox protein, p
JMSF018H17Sequence463013326 (4)ref|XP_009763971.1|2e-04PREDICTED: homeobox-leucine zipper protein ATHB-13 [Nicotiana sylvestris]782013326 (4)ref|XP_002520111.1|4e-70homeobox protein, putative [Ricinus communis] gb|EEF42166.1| homeobox protein, p

Alignment

This contig is upended


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rJMFF041N05-                     AATTAAGCATATATATTGATCGTAAAATTTCATAACTTCACAAAAAAAG
                      ____________________________________________________________
consensus                        AATTAAGCATATATATTGATCGTAAAATTTCATAACTTCACAAAAAAAG
 
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rJMFF041N05-          AAAAAAAAGAAAAACAAAGTATATAGTGGTTCTTGCTACTAACTTAAGTTTATACAGAAA
rJMSF018H17-                                                                CAGAAA
                      ____________________________________________________________
consensus             AAAAAAAAGAAAAACAAAGTATATAGTGGTTCTTGCTACTAACTTAAGTTTATACAGAAA
 
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rJMFF041N05-          TCAATCAACTAAGCTTCCTTCCTAGCTAGCTAGGATAGGCACCAACCAAATTAAAAGAAA
rJMSF018H17-          TTAATCAACTAAGCTTCCTTCCTAGCTAGCTAGGATAGGCACCAACCAAATTAAAAGAAA
                      ____________________________________________________________
consensus             TTAATCAACTAAGCTTCCTTCCTAGCTAGCTAGGATAGGCACCAACCAAATTAAAAGAAA
 
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rJMFF041N05-          GAACCTCAAACCCCAAATAAATCTTTTATATATATGTAGTAAAATATATCTGATCACAAC
rJMSF018H17-          GAACCTCAAACCCCAAATAAATCTTTTATATATATGTAGTAAAATATATCTGATCACAAC
                      ____________________________________________________________
consensus             GAACCTCAAACCCCAAATAAATCTTTTATATATATGTAGTAAAATATATCTGATCACAAC
 
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rJMFF041N05-          GTAACATAAGTACGTAGTGGATATGATATGATATGATCCACATACAGAAATGAAGATCAA
rJMSF018H17-          GTAACATAAGTACGTAGTGGATATGATATGATATGATCCACATACAGAAATGAAGATCAA
                      ____________________________________________________________
consensus             GTAACATAAGTACGTAGTGGATATGATATGATATGATCCACATACAGAAATGAAGATCAA
 
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rJMFF041N05-          TTGAAATGGTGTTGATCCAACCAGGGCCAGAATCCAGAGTGATCATCTCCCCCACAGAAC
rJMSF018H17-          TTGAAATGGTGTTGATCCAACCAGGGCCAGAATCCAGAGTGATCATCTCCCCCACAGAAC
                      ____________________________________________________________
consensus             TTGAAATGGTGTTGATCCAACCAGGGCCAGAATCCAGAGTGATCATCTCCCCCACAGAAC
 
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rJMFF041N05-          ATGTTGGATAGGCTCTCTTCCTTCACAGTTGGGTCCATTTTGAGGCAATGATGGATAAGA
rJMSF018H17-          ATGTTGGATAGGCTCTCTTCCTTCACAGTTGGGTCCATTTTGAGGCAATGATGGATAAGA
                      ____________________________________________________________
consensus             ATGTTGGATAGGCTCTCTTCCTTCACAGTTGGGTCCATTTTGAGGCAATGATGGATAAGA
 
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rJMFF041N05-          TCCGAGTGTCTTGACGATGATGAAGAATTATTATTGTGAAAGAGATGGGGCATTGATATC
rJMSF018H17-          TCCGAGTGTCTTGACGATGATGAAGAATTATTATTGTGAAAGAGATGGGGCATTGATATC
                      ____________________________________________________________
consensus             TCCGAGTGTCTTGACGATGATGAAGAATTATTATTGTGAAAGAGATGGGGCATTGATATC
 
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rJMFF041N05-          CCTGCAGCTGGGAACAGAGATGATGTTGTAGTAGTAGTAGTAGTTGTTGGATGGCTATCA
rJMSF018H17-          CCTGCAGCTGGGAACAGAGATGATGTTGTAGTAGTAGTAGTAGTTGTTGGATGGCTATCA
                      ____________________________________________________________
consensus             CCTGCAGCTGGGAACAGAGATGATGTTGTAGTAGTAGTAGTAGTTGTTGGATGGCTATCA
 
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rJMFF041N05-          ATGGCAGCTGTGCTCCTTGAGATAATGTCTAGCTTCATTATTTCCGCACAACTGTTCTCA
rJMSF018H17-          ATGGCAGCTGTGCTCCTTGAGATAATGTCTAGCTTCATTATTTCTGCACAACTGTTCTCA
                      ____________________________________________________________
consensus             ATGGCAGCTGTGCTCCTTGAGATAATGTCTAGCTTCATTATTTCTGCACAACTGTTCTCA
 
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rJMFF041N05-          CTTCTACTG                                                   
rJMSF018H17-          CTTCTACTGTTACTGCATGAACCTTCTGTCTCTTTGTTCAGATTTATGGATTCTGTGGGT
                      ____________________________________________________________
consensus             CTTCTACTGTTACTGCATGAACCTTCTGTCTCTTTGTTCAGATTTATGGATTCTGTGGGT
 
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rJMSF018H17-          TGAATGCTATCCCTACACCTACTATTCTTCACTCCCATTATCTGGGCATGAAGCTTTTGA
JMFF041N05+                                               ATTACCTGGGCATGAAGCTTTTGA
                      ____________________________________________________________
consensus             TGAATGCTATCCCTACACCTACTATTCTTCACTCCCATTATCTGGGCATGAAGCTTTTGA
 
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rJMSF018H17-          TTATGAGCAAGAAGAGCATCATTTTCAGCCTTGACAGCGTCGAACTGTCTCTTGAGGGAT
JMFF041N05+           TTATGAGCAAGAAGAGCATCATTTTCAGCCTTGACAGCGTCGAACTGTCTCTTGAGGGAT
                      ____________________________________________________________
consensus             TTATGAGCAAGAAGAGCATCATTTTCAGCCTTGACAGCGTCGAACTGTCTCTTGAGGGAT
 
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rJMSF018H17-          TCATAGTCCCTTTCCAGCTGCTTAGTCTTCCACCGAGCTCGCCTGTTCTGGAACCAAATC
JMFF041N05+           TCATAGTCCCTTTCCAGCTGCTTAGTCTTCCACCGAGCTCGCCTGTTCTGGAACCAAATC
                      ____________________________________________________________
consensus             TCATAGTCCCTTTCCAGCTGCTTAGTCTTCCACCGAGCTCGCCTGTTCTGGAACCAAATC
 
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rJMSF018H17-          GCGATCTGTCTTGGCTGCAAACCCAGAGCTCTAGCCAGCTGCATTTTCCTCTCTGG    
JMFF041N05+           GCGATCTGTCTTGGCTGCAAACCCAGAGCTCTAGCCAGCTGCATTTTCCTCTCTGGTTCC
                      ____________________________________________________________
consensus             GCGATCTGTCTTGGCTGCAAACCCAGAGCTCTAGCCAGCTGCATTTTCCTCTCTGGTTCC
 
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JMFF041N05+           AGCTTGTTTCCCACCTCGAAGCTCTTCTCCAGAGCCTTCACTTGTTCCGTGTTCAGTCTC
                      ____________________________________________________________
consensus             AGCTTGTTTCCCACCTCGAAGCTCTTCTCCAGAGCCTTCACTTGTTCCGTGTTCAGTCTC
 
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JMFF041N05+           CTTTTCTTGTTGTTCTCTCCTGCCTGCACTGACCCTTCTTCCTCATCTGACACCTCTTCC
                      ____________________________________________________________
consensus             CTTTTCTTGTTGTTCTCTCCTGCCTGCACTGACCCTTCTTCCTCATCTGACACCTCTTCC
 
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JMFF041N05+           TGCACATCTCCATGTGACAATGCCTCTTCACAACACTTCATTGATCTCTTCCCACCAAGA
                      ____________________________________________________________
consensus             TGCACATCTCCATGTGACAATGCCTCTTCACAACACTTCATTGATCTCTTCCCACCAAGA
 
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JMFF041N05+           AATGAACTCCCACCCACTACTCCATGGAAGTTCTGAGGAGGAGGAGGAATAGTGCATGAA
JMSF018H17+                            TACTCCATGGAAGTTCTGAGGAGGAGGAGGAATAGTGCATGAA
                      ____________________________________________________________
consensus             AATGAACTCCCACCCACTACTCCATGGAAGTTCTGAGGAGGAGGAGGAATAGTGCATGAA
 
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JMFF041N05+           GGAAAGAGGGGAGAGAGAGCGGTGGAGGGTTGATGATGATGATGATCATTGGGATCATGA
JMSF018H17+           GGAAAGAGGGGAGAGAGAGCGGTGGAGGGTTGATGATGATGATGATCATTGGGATCATGA
                      ____________________________________________________________
consensus             GGAAAGAGGGGAGAGAGAGCGGTGGAGGGTTGATGATGATGATGATCATTGGGATCATGA
 
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JMFF041N05+           TGAGGGGTTTGAAGCATAAAATTGGTGGGGAAGAAATCCATTCCGATGCAAGAAGTCATG
JMSF018H17+           TGAGGGGTTTGAAGCATAAAATTGGTGGGGAAGAAATCCATTCCGATGCAAGAAGTCATG
                      ____________________________________________________________
consensus             TGAGGGGTTTGAAGCATAAAATTGGTGGGGAAGAAATCCATTCCGATGCAAGAAGTCATG
 
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JMFF041N05+           ACCTGACCTAATACACTAGCTTAGCTTTTGGATTCTTGCTGCCTGCCTTTTGTTCATACT
JMSF018H17+           ACCTGACCTAATACACTAGCTTAGCTTTTGGATTCTTGCTGCCTGCCTTTTGTTCATACT
                      ____________________________________________________________
consensus             ACCTGACCTAATACACTAGCTTAGCTTTTGGATTCTTGCTGCCTGCCTTTTGTTCATACT
 
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JMFF041N05+           TAATTACA                                                    
JMSF018H17+           TAATTACAACATATGAAGAAGAAGAAGAAGAAGAAGATCAGATCAGATCAGATCTATATA
                      ____________________________________________________________
consensus             TAATTACAACATATGAAGAAGAAGAAGAAGAAGAAGATCAGATCAGATCAGATCTATATA
 
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JMSF018H17+           TGAGTAGTACACTACAGTCGAAATATATATTTATATATTCTAATTTTTATGGACGAAAAA
                      ____________________________________________________________
consensus             TGAGTAGTACACTACAGTCGAAATATATATTTATATATTCTAATTTTTATGGACGAAAAA
 
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JMSF018H17+           TTGGATCGGAGAACAGTAGTTATTTTCAAGAATATTCGTGTGGGTTCAAGAAAGAGAAAA
                      ____________________________________________________________
consensus             TTGGATCGGAGAACAGTAGTTATTTTCAAGAATATTCGTGTGGGTTCAAGAAAGAGAAAA
 
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JMSF018H17+           TAATAATAATAATTATAACGGTGTGAATTCTGCAAGGGGATGGTTTGTGGATTCAACTTC
                      ____________________________________________________________
consensus             TAATAATAATAATTATAACGGTGTGAATTCTGCAAGGGGATGGTTTGTGGATTCAACTTC