Contig 013323:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+                          CTTCAAGTAATCCATAACTTCTGGTGTGATTTTAGAATCATCAAT
                      ____________________________________________________________
consensus                            CTTCAAGTAATCCATAACTTCTGGTGTGATTTTAGAATCATCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           GAATAACTTTGCTCCATCAATCTCCACTATCAAGTATGCATACATGACAGGTGAATGTCG
                      ____________________________________________________________
consensus             GAATAACTTTGCTCCATCAATCTCCACTATCAAGTATGCATACATGACAGGTGAATGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           AACATCACTACCCCTCAAGTTCAATAACCAGGCAATTTCATCAAGCATGGAAATAACAAT
                      ____________________________________________________________
consensus             AACATCACTACCCCTCAAGTTCAATAACCAGGCAATTTCATCAAGCATGGAAATAACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           TGCTGATGAACCAGCATTAATTAAGTCAGACCTCAAGGAAAATAACTTTGAAGACACATC
                      ____________________________________________________________
consensus             TGCTGATGAACCAGCATTAATTAAGTCAGACCTCAAGGAAAATAACTTTGAAGACACATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           TGCACCAGCATATTTCAGGTCATGCACTCTAATTGGTTTCTTAGGAGGCTGTGGTCTTGA
                      ____________________________________________________________
consensus             TGCACCAGCATATTTCAGGTCATGCACTCTAATTGGTTTCTTAGGAGGCTGTGGTCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           TTCTTTCCATATTTCATCAACAAGGTTTAAATTGGACAAGAAGACTAATTCATGATTTCC
JMSF043O18+                 CCATATTTCATCANCAAGGTTTAAATTGGACAAGAAGACTAATTCATGATTTCC
                      ____________________________________________________________
consensus             TTCTTTCCATATTTCATCAACAAGGTTTAAATTGGACAAGAAGACTAATTCATGATTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           TTTAGATATGTCCTCTTTCAGTTCTTCTGCAGCATCTGATGAAAACAAAAA-------AG
JMSF043O18+           TTTAGATATGTCCTCTTTCAGTTCTTCTGCAGCATCTGATGAAAACAAAAACTGCTCCAG
                      ____________________________________________________________
consensus             TTTAGATATGTCCTCTTTCAGTTCTTCTGCAGCATCTGATGAAAACAAAAACTGCTCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           GATCAATTCCAATCCTGGAACCAGGTGAGAGAACACTGTTGAGCCACTCACTGGGAGTGG
JMSF043O18+           GATCAATTCCAATCCTGGAACCAGGTGAGAGAACACTGTTGAGCCACTCACTGGGAGTGG
                      ____________________________________________________________
consensus             GATCAATTCCAATCCTGGAACCAGGTGAGAGAACACTGTTGAGCCACTCACTGGGAGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           GTACCCCCCAATTACCTGATCGCATGAGAATCCAGCTAGAGCTCAGCTGCTTCTCAGCCT
JMSF043O18+           GTACCCCCCAATTACCTGATCGCATGAGAATCCAGCTAGAGCTCAGCTGCTTCTCAGCCT
                      ____________________________________________________________
consensus             GTACCCCCCAATTACCTGATCGCATGAGAATCCAGCTAGAGCTCAGCTGCTTCTCAGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           GCAGAAAGTAGCGCCCATCTGTCCACAAGGCTGCTTTATCCTTTGTGACAACTGCAGTTC
JMSF043O18+           GCAGAAAGTAGCGCCCATCTGTCCACAAGGCTGCTTTATCCTTTGTGACAACTGCAGTTC
                      ____________________________________________________________
consensus             GCAGAAAGTAGCGCCCATCTGTCCACAAGGCTGCTTTATCCTTTGTGACAACTGCAGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025D24+           CTGCACTTCCAGTGAACCCTGATATATATGCTCTCC                        
JMSF043O18+           CTGCACTTCCAGTGAACCCTGATATATATGCTCTCCGCATATAACAATCAGCAATGAATT
                      ____________________________________________________________
consensus             CTGCACTTCCAGTGAACCCTGATATATATGCTCTCCGCATATAACAATCAGCAATGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O18+           CACTCTGGTGGGCGTCCTGTGAAGGTATGATGTAGGCGTCAATGTTAATATCAGGCCTCG
                      ____________________________________________________________
consensus             CACTCTGGTGGGCGTCCTGTGAAGGTATGATGTAGGCGTCAATGTTAATATCAGGCCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043O18+           AAAAGAGCTGGCGGAGGGCGCGAAGCCTGTCTTCCTGGTCGAGACCGCGAGGCTTTTTCT
                      ____________________________________________________________
consensus             AAAAGAGCTGGCGGAGGGCGCGAAGCCTGTCTTCCTGGTCGAGACCGCGAGGCTTTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048P06+                         GGCTTGGCAGCGATGTTGCTGGAGTTTCGTACGATGAGGACGCGGC
JMSF043O18+           GGAACTCTGAGGATGGCTTGGCAGCGATGTTGCTGGAGTTTCGTACGATGAGGACGCGGC
JMSF018A15+              ACTCTGAGGATGGCTTGGCAGCGATGTTGCTGGAGTTTCGTACGATGAGGACGCGGC
                      ____________________________________________________________
consensus             GGAACTCTGAGGATGGCTTGGCAGCGATGTTGCTGGAGTTTCGTACGATGAGGACGCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048P06+           AATTTGCTGAGCTNGAGGGAAATTTGAGGGGATAGTGGAGTTTNCGAGGAATCGGAAGNG
JMSF043O18+           AATTTGCTGAGCTGGAGGGAAATTTGAGGGGATAGTGGAGTTTGCGAGGAATCGGAAGGG
JMSF018A15+           AATTTGCTGAGCTGGAGGGAAATTTGAGGGGATAGTGGAGTTTGCGAGGAATCGGAAGGG
                      ____________________________________________________________
consensus             AATTTGCTGAGCTGGAGGGAAATTTGAGGGGATAGTGGAGTTTGCGAGGAATCGGAAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048P06+           AGNTCAATGGGAANCGGGANTGGCGAGTGTNATANTGGAGGGTAGAGGAGCGGCGGAGCA
JMSF043O18+           AGATCAATGGGAAGCGGGAGTGGCGAGTGTGATAGTGGAGGGTAGAGGAGCGGCGGAGCA
JMSF018A15+           AGATCAATGGGAAGCGGGAGTGGCGAGTGTGATAGTGGAGGGTAGAGGAGCGGCGGAGCA
                      ____________________________________________________________
consensus             AGATCAATGGGAAGCGGGAGTGGCGAGTGTGATAGTGGAGGGTAGAGGAGCGGCGGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048P06+           TGGTGGTGGAGAGAGACATCGTAGCAGCGGTCACCNCCGTGGTCATCGGAGAAATAGAAT
JMSF043O18+           TGGTGGTGGAGAGAGACATCGTAGCAGCGGTCACCGCCGTGGTCATCGGAGAAATAGAAT
JMSF018A15+           TGGTGGTGGAGAGAGACATCGTAGCAGCGGTCACCGCCGTGGTCATCGGAGAAATAGAAT
                      ____________________________________________________________
consensus             TGGTGGTGGAGAGAGACATCGTAGCAGCGGTCACCGCCGTGGTCATCGGAGAAATAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048P06+           GAGACAGCGAGATAAGGTCATAAGGTATG                               
JMSF043O18+           GAGACAGCGAGATAAGGTCATAAGGTATG                               
JMSF018A15+           GAGACAGCGAGATAAGGTCATAAGGTATGTGGTTTTCCTGAATCTTGCTTTCACGCTTTC
                      ____________________________________________________________
consensus             GAGACAGCGAGATAAGGTCATAAGGTATGTGGTTTTCCTGAATCTTGCTTTCACGCTTTC