Contig 013308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016B11Sequence441013308 (2)ref|XP_009798569.1|6e-50PREDICTED: mortality factor 4-like protein 1 isoform X4 [Nicotiana sylvestris]557013308 (2)ref|XP_009798569.1|2e-49PREDICTED: mortality factor 4-like protein 1 isoform X4 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF016B11-                                                     GTACAAAACTTTCATGA
                      ____________________________________________________________
consensus                                                        GTACAAAACTTTCATGA
 
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rJMSF016B11-          TACAGGCAATATAATCAGCAGCTACAGTTCAATTTGCACAGAGCATTAAGATTTATACAG
                      ____________________________________________________________
consensus             TACAGGCAATATAATCAGCAGCTACAGTTCAATTTGCACAGAGCATTAAGATTTATACAG
 
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rJMSF016B11-          CAGTTAACACTATTGTTACAGGGAAACAGGGATTGGCTCTTCCTCCAAGCAGCTGCAGCT
JMSF016B11+                                                  TTCCTCCAAGCAGCTGCAGCT
                      ____________________________________________________________
consensus             CAGTTAACACTATTGTTACAGGGAAACAGGGATTGGCTCTTCCTCCAAGCAGCTGCAGCT
 
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rJMSF016B11-          GCGGCTCTCTTAACCCATACATATGTGTGTCCCGGATGAATACTAGTGCAAAGGAAAAAA
JMSF016B11+           GCGGCTCTCTTAACCCATACATATGTGTGTCCCGGATGAATACTAGTGCAAAGGAAAAAA
                      ____________________________________________________________
consensus             GCGGCTCTCTTAACCCATACATATGTGTGTCCCGGATGAATACTAGTGCAAAGGAAAAAA
 
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rJMSF016B11-          GAAAATGGCAGTAGCATGTTCAAGTAAGCGATGTTTGGATGAACAGATAGATAGTGTTGG
JMSF016B11+           GAAAATGGCAGTAGCATGTTCAAGTAAGCGATGTTTGGATGAACAGATAGATAGTGTTGG
                      ____________________________________________________________
consensus             GAAAATGGCAGTAGCATGTTCAAGTAAGCGATGTTTGGATGAACAGATAGATAGTGTTGG
 
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rJMSF016B11-          GTGTTCAACTGTCTTTCACCTTGCCAGATCCATCAGAAGCTTTAGCAGTTTCATAAGTAG
JMSF016B11+           GTGTTCAACTGTCTTTCACCTTGCCAGATCCATCAGAAGCTTTAGCAGTTTCATAAGTAG
                      ____________________________________________________________
consensus             GTGTTCAACTGTCTTTCACCTTGCCAGATCCATCAGAAGCTTTAGCAGTTTCATAAGTAG
 
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rJMSF016B11-          AAACAAAAAACGCACCCTGATTTTTCTGCACAAATTTTAGAAAATCCAACAATTTCTGCT
JMSF016B11+           AAACAAAAAACGCACCCTGATTTTTCTGCACAAATTTTAGAAAATCCAACAATTTCTGCT
                      ____________________________________________________________
consensus             AAACAAAAAACGCACCCTGATTTTTCTGCACAAATTTTAGAAAATCCAACAATTTCTGCT
 
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rJMSF016B11-          GCAAGCGGATCAATGTCTCCTCTTCAATTTTCACGTAAGAAAGCAATTCAGGCAACTTAA
JMSF016B11+           GCAAGCGGATCAATGTCTCCTCTTCAATTTTCACGTAAGAAAGCAATTCAGGCAACTTAA
                      ____________________________________________________________
consensus             GCAAGCGGATCAATGTCTCCTCTTCAATTTTCACGTAAGAAAGCAATTCAGGCAACTTAA
 
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rJMSF016B11-          CAAAAAGACGCAAAAGATGTTCAGCACCATATACACTTGATGGAGAGACATTATCTGAAA
JMSF016B11+           CAAAAAGACGCAAAAGATGTTCAGCACCATATACACTTGATGGAGAGACATTATCTGAAA
                      ____________________________________________________________
consensus             CAAAAAGACGCAAAAGATGTTCAGCACCATATACACTTGATGGAGAGACATTATCTGAAA
 
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rJMSF016B11-          CTGCTTCATGATACTGTTGGCGCTCCTTTTTATACAAAAG                    
JMSF016B11+           CTGCTTCATGATACTGTTGGCGCTCCTTTTTATACAAAAGCAGAACCGGCAAGGCTTTGT
                      ____________________________________________________________
consensus             CTGCTTCATGATACTGTTGGCGCTCCTTTTTATACAAAAGCAGAACCGGCAAGGCTTTGT