| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012B22 | Sequence | 467 | 013285 (3) | 689 | 013285 (3) | ref|XP_009794942.1| | 1e-07 | PREDICTED: photosystem I reaction center subunit psaK, chloroplastic-like [Nico | |||
| JMSF026G20 | Sequence | 680 | 013285 (3) | ref|XP_009794942.1| | 1e-07 | PREDICTED: photosystem I reaction center subunit psaK, chloroplastic-like [Nico | 726 | 018228 | ref|XP_009794942.1| | 3e-07 | PREDICTED: photosystem I reaction center subunit psaK, chloroplastic-like [Nico |
This contig is upended
. : . : . : . : . : . :
rJMSF012B22- CNACTATGTANCGNTTGTGANTTGGTTAAACGTGCCAATAAATGTTTGATTAAGTAGTT
JMSF026G20+ TGCCAATAAATGTTTGATTAATTAGTT
____________________________________________________________
consensus CNACTATGTANCGNTTGTGANTTGGTTAAACGTGCCAATAAATGTTTGATTAATTAGTT
. : . : . : . : . : . :
rJMSF012B22- TTTTGNANTGGTTTTTTGCTCTAAAATGCTAAAATTTAAAAAGTTGCTTACAACAGCTTT
JMSF026G20+ TTTNGTAATAGTTTTTTGCTCTAAAATGCTAAAATTTAAAAAGTTGCTTACAACAGCTTT
____________________________________________________________
consensus TTTTGTAATGGTTTTTTGCTCTAAAATGCTAAAATTTAAAAAGTTGCTTACAACAGCTTT
. : . : . : . : . : . :
rJMSF012B22- TTCAATCAGTTTTTAGAAAATAATGTTGTATGTAATCAGTTATCAGCTTACTGCTAATTT
JMSF026G20+ TTCAATCAGTTTTTAGAAAATAATGTTGTATGTAATCAGTTATCAGCTTACTGCTAATTT
____________________________________________________________
consensus TTCAATCAGTTTTTAGAAAATAATGTTGTATGTAATCAGTTATCAGCTTACTGCTAATTT
. : . : . : . : . : . :
rJMSF012B22- ACTAAACATCTTTTTACAATCAGCTAGTGCTATTAAGTAGTCAAACTCATTAACCTAATC
JMSF026G20+ ACTAAACATCTTTTTACAATCAGCTAGTGCTATTAAGTAGTCAAACTCATTAACCTAATC
____________________________________________________________
consensus ACTAAACATCTTTTTACAATCAGCTAGTGCTATTAAGTAGTCAAACTCATTAACCTAATC
. : . : . : . : . : . :
rJMSF012B22- AGCTATCAGCTATTTACCAAACACACCTAAAAGTGTGTTTTACTCTCGAGAAAATTACTT
JMSF026G20+ AGCTATCAGCTATTTACCAAACACACCTAAAAGTGTGTTTTACTCTCGAGAAAATTACTT
____________________________________________________________
consensus AGCTATCAGCTATTTACCAAACACACCTAAAAGTGTGTTTTACTCTCGAGAAAATTACTT
. : . : . : . : . : . :
rJMSF012B22- ACCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCTCCCCTG
JMSF026G20+ ACCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCTCCCCTG
____________________________________________________________
consensus ACCAAATTTGTGGGTGAGCCAATGAAATCACAACGAGCTCCCAAAGCACCTCCTCCCCTG
. : . : . : . : . : . :
rJMSF012B22- CGCTTCATTGGTTGTAGGGCAACCTGAACATTAAAAATTTTGAAATCAAACCCTTATAGA
JMSF026G20+ CGCTTCATTGGTTGTAGGGCAACCTGAACATTAAAAATTTTGAAATCAAACCCTTATAGA
JMSF012B22+ GGGCANCCTGACCATTAAAAATTTTGAAATCAAACCCTTATAGA
____________________________________________________________
consensus CGCTTCATTGGTTGTAGGGCAACCTGAACATTAAAAATTTTGAAATCAAACCCTTATAGA
. : . : . : . : . : . :
rJMSF012B22- AAACTTTAATTCTCCAAAGTATTTAAAAAAAATAAAAAAGTGTTAACCAAATCCGAGAGA
JMSF026G20+ AAACTTTAATTCTCCAAAGTATTTAAAAAAAATAAAAAAGTGTTAACCAAATCCGAGAGA
JMSF012B22+ AAACTTTAATTCTCCAAAGTATTTAAAAAAAATAAAAAAGTGTTAACCAAATCCGAGAGA
____________________________________________________________
consensus AAACTTTAATTCTCCAAAGTATTTAAAAAAAATAAAAAAGTGTTAACCAAATCCGAGAGA
. : . : . : . : . : . :
rJMSF012B22- CTATTTTCTGTATACTTATATACACTCCTATGATGAATTAATATCCCTAATTACAATCGA
JMSF026G20+ CTATTTTCTGTATACTTATATACACTCCTATGATGAATTAATATCCCTAATTACAATCGA
JMSF012B22+ CTATTTTCTGTATACTTATATACACTCCTATGATGAATTAATATCCCTAATTACAATCGA
____________________________________________________________
consensus CTATTTTCTGTATACTTATATACACTCCTATGATGAATTAATATCCCTAATTACAATCGA
. : . : . : . : . : . :
rJMSF012B22- TAAGTACATCCACTACAACAAATTACAACACTTCGAGATAAACGGCACCAATGACCTTAC
JMSF026G20+ TAAGTACATCCACTACAACAAATTACAACACTTCGAGATAAACGGCACCAATGACCTTAC
JMSF012B22+ TAAGTACATCCACTACAACAAATTACAACACTTCGAGATAAACGGCACCAATGACCTTAC
____________________________________________________________
consensus TAAGTACATCCACTACAACAAATTACAACACTTCGAGATAAACGGCACCAATGACCTTAC
. : . : . : . : . : . :
rJMSF012B22- AAAACAGAGACGATTACCTTTAAGTTTTACAATATACATTAAGGTTATAAGGTAAGATAT
JMSF026G20+ AAAACAGAGACGATTACCTTTAAGTTTTACAATATACATTAAGGTTATAAGGTAAGATAT
JMSF012B22+ AAAACAGAGACGATTACCTTTAAGTTTTACAATATACATTAAGGTTATAAGGTAAGATAT
____________________________________________________________
consensus AAAACAGAGACGATTACCTTTAAGTTTTACAATATACATTAAGGTTATAAGGTAAGATAT
. : . : . : . : . : . :
rJMSF012B22- AGAGTGTATAAAAGAAAGGGAACTGAC
JMSF026G20+ AGAGTGTATAAAAGAAAGGGAACTGAC
JMSF012B22+ AGAGTGTATAAAAGAAAGGGAACTGACCAAACTCCTCGAGGGAGAAGTTGATGGGGCTGT
____________________________________________________________
consensus AGAGTGTATAAAAGAAAGGGAACTGACCAAACTCCTCGAGGGAGAAGTTGATGGGGCTGT
. : . : . : . : . : . :
JMSF012B22+ GATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTTCCT
____________________________________________________________
consensus GATGGCTTTAAGGCCATTAAACTGGGGAAGAGAAGTCATCATGCTGGCTGCCATTTTCCT
. : . : . : . : . : . :
JMSF012B22+ TAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTGGTTTAAGTTTTGGTC
____________________________________________________________
consensus TAATTTCAAACAAAAAACCTGTGAGATCTTCTAAGTGTTGTTCTGGTTTAAGTTTTGGTC