Contig 013280:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011M09Sequence257013280 (2)ref|XP_010647277.1|9e-17PREDICTED: BTB/POZ domain-containing protein DOT3-like [Vitis vinifera]781020320ref|XP_009623089.1|2e-110PREDICTED: putative BTB/POZ domain-containing protein DOT3 [Nicotiana tomentosi
JMSF038I12Sequence739013280 (2)emb|CBI25777.3|3e-13unnamed protein product [Vitis vinifera]798012700 (4)ref|XP_006344890.1|315PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF038I12+                             ACCGNGTCGATTACACCAGATACAACCACCCTTGTATGCTAT
                      ____________________________________________________________
consensus                               ACCGNGTCGATTACACCAGATACAACCACCCTTGTATGCTAT
 
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JMSF038I12+           TTGGGTTGTACTTAGTATTATATATGGAGACACTCTATGTCGCACGGTCAACTCTTGGTT
                      ____________________________________________________________
consensus             TTGGGTTGTACTTAGTATTATATATGGAGACACTCTATGTCGCACGGTCAACTCTTGGTT
 
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JMSF038I12+           CCTGATTTTCTGAATGGTAGATTGTGAGCAAAAGACACAGGAAATTCTAAGATGCTGATT
                      ____________________________________________________________
consensus             CCTGATTTTCTGAATGGTAGATTGTGAGCAAAAGACACAGGAAATTCTAAGATGCTGATT
 
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JMSF038I12+           TACACCGTGTCGATTTACACCAGATACAATCACCCTTGTATGCTATTTGTGATAGATTGT
                      ____________________________________________________________
consensus             TACACCGTGTCGATTTACACCAGATACAATCACCCTTGTATGCTATTTGTGATAGATTGT
 
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JMSF038I12+           GGACAAAGACACATAATCAAACCCTTGCAATTACAGTATGAGAGTAACATCTAATGTGAT
                      ____________________________________________________________
consensus             GGACAAAGACACATAATCAAACCCTTGCAATTACAGTATGAGAGTAACATCTAATGTGAT
 
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JMSF038I12+           GGGCTCTTTGTGAGCACCAAGCACTGGTTCTCCCACCTAATATACGGCTAAGTCACCATG
                      ____________________________________________________________
consensus             GGGCTCTTTGTGAGCACCAAGCACTGGTTCTCCCACCTAATATACGGCTAAGTCACCATG
 
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JMSF038I12+           ATTTACTCATCCAGTATCCCGTGAGACCAGGATATGGGGGCCTAGGGACAAGGGAATTTC
                      ____________________________________________________________
consensus             ATTTACTCATCCAGTATCCCGTGAGACCAGGATATGGGGGCCTAGGGACAAGGGAATTTC
 
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JMSF038I12+           GCCTTTTATGGGTAGGAATACATAATACCCATTACAATTGGGCATACTAGGATTGAAATA
                      ____________________________________________________________
consensus             GCCTTTTATGGGTAGGAATACATAATACCCATTACAATTGGGCATACTAGGATTGAAATA
 
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JMSF038I12+           TTGTATGGCTATCTAGTCATTACACATGAAGAAGCAACATAGTGCATACCTTGTGAACAT
JMSF011M09+                                                            CTTGTGAACAT
                      ____________________________________________________________
consensus             TTGTATGGCTATCTAGTCATTACACATGAAGAAGCAACATAGTGCATACCTTGTGAACAT
 
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JMSF038I12+           GAAAAGTGACATCTTGAACCTGAATGGAGAGATCAGTTGGAATCTGACAATTGGCATACC
JMSF011M09+           GAAAAGTGACATCTTGAACCTGAATGGAGAGATCAGTTGGAATCTGACAATTGGCATACC
                      ____________________________________________________________
consensus             GAAAAGTGACATCTTGAACCTGAATGGAGAGATCAGTTGGAATCTGACAATTGGCATACC
 
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JMSF038I12+           ATGATTGTTCTCTTCTCTCAAAGCTGTCTGCTGTTGTGATGAACTTAGGGGGGAAAAGTA
JMSF011M09+           ATGATTGTTCTCTTCTCTCAAAGCTGTCTGCTGTTGTGATGAACTTAGGGGGGAAAAGTA
                      ____________________________________________________________
consensus             ATGATTGTTCTCTTCTCTCAAAGCTGTCTGCTGTTGTGATGAACTTAGGGGGGAAAAGTA
 
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JMSF038I12+           TGGTTTGGATGGGAGGTCCCCCAGCATCATCAGAATCACTCCCAAAGCTCTCTGACCTTT
JMSF011M09+           TGGTTTGGATGGGAGGTCCCCCAGCATCATCAGAATCACTCCCAAAGCTCTCTGACCTTT
                      ____________________________________________________________
consensus             TGGTTTGGATGGGAGGTCCCCCAGCATCATCAGAATCACTCCCAAAGCTCTCTGACCTTT
 
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JMSF038I12+           CCAACTTGATGCACTTCTTCATTCTGACTTGTCTCT                        
JMSF011M09+           CCAACTTGATGCACTTCTTCATTCTGACTTGTCTCTACCTCATACCTGAGATCGAAGATC
                      ____________________________________________________________
consensus             CCAACTTGATGCACTTCTTCATTCTGACTTGTCTCTACCTCATACCTGAGATCGAAGATC