Contig 013277:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011H22Sequence264013277 (2)ref|XP_006365568.1|2e-34PREDICTED: mitochondrial inner membrane protease subunit 1-like [Solanum tubero786013277 (2)ref|XP_009596099.1|8e-89PREDICTED: mitochondrial inner membrane protease subunit 1-like [Nicotiana tome

Alignment

This contig is upended


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rJMSF011H22-                                                             GTCTTTTCC
                      ____________________________________________________________
consensus                                                                GTCTTTTCC
 
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rJMSF011H22-          CACTTTCAAGTCCTAAAATCCTACCCTGGTATATGAAACGTTTCATTTGGAAAAGATGTT
                      ____________________________________________________________
consensus             CACTTTCAAGTCCTAAAATCCTACCCTGGTATATGAAACGTTTCATTTGGAAAAGATGTT
 
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rJMSF011H22-          GCGAGATAAACTACTCCAGCTTCTCAAAATAGCACACACAACGCCCTAGCAAACAAGCAA
                      ____________________________________________________________
consensus             GCGAGATAAACTACTCCAGCTTCTCAAAATAGCACACACAACGCCCTAGCAAACAAGCAA
 
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rJMSF011H22-          TCTGAGCAGCGAATGTCTAGAGAGTTACTTGGCTTGGGGCCTCTGCAGCAGCAAATCATT
                      ____________________________________________________________
consensus             TCTGAGCAGCGAATGTCTAGAGAGTTACTTGGCTTGGGGCCTCTGCAGCAGCAAATCATT
 
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rJMSF011H22-          TGTGTCGAGATTTCTAGGAATTGTTTAAAAGATTCAAACTTTACAAGGTGGAAGCTTCTG
                      ____________________________________________________________
consensus             TGTGTCGAGATTTCTAGGAATTGTTTAAAAGATTCAAACTTTACAAGGTGGAAGCTTCTG
 
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rJMSF011H22-          AAATCAAATTACTTTACTTCCCTTCTCACAGATCCAAAATCCTCCGGAGGCCAGACAATC
                      ____________________________________________________________
consensus             AAATCAAATTACTTTACTTCCCTTCTCACAGATCCAAAATCCTCCGGAGGCCAGACAATC
 
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rJMSF011H22-          CAAATGATTCTGCCCTGAACAAGTCCATATGGAACTGGCCCAAATTTCCTTGAATCAGTT
                      ____________________________________________________________
consensus             CAAATGATTCTGCCCTGAACAAGTCCATATGGAACTGGCCCAAATTTCCTTGAATCAGTT
 
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rJMSF011H22-          GTATTATACTTGAAATCTCCTTCTATCCAAACATGCCCTTTTGGTACCACAATAGTGTCT
                      ____________________________________________________________
consensus             GTATTATACTTGAAATCTCCTTCTATCCAAACATGCCCTTTTGGTACCACAATAGTGTCT
 
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rJMSF011H22-          TCTTTCTCGCTATTCTTCGGGTCCGCAACAAATTTAACAGTATCACCAGCAACGCCCACC
                      ____________________________________________________________
consensus             TCTTTCTCGCTATTCTTCGGGTCCGCAACAAATTTAACAGTATCACCAGCAACGCCCACC
 
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rJMSF011H22-          ACTCGCTTGCTGATAATCTTCCTAGGGTTTTCGGGGCTCCGAACCAGGACCACATCTCCG
JMSF011H22+                                               CTCCGAACCAGGACCACATCTCCG
                      ____________________________________________________________
consensus             ACTCGCTTGCTGATAATCTTCCTAGGGTTTTCGGGGCTCCGAACCAGGACCACATCTCCG
 
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rJMSF011H22-          GGCACTACTTTGCCGAACCGGGTCGATAGCCGTTCCGCCAAGACAAAGTCTCCGGTCAAA
JMSF011H22+           GGCACTACTTTGCCGAACCGGGTCGATAGCCGTTCCGCCAAGACAAAGTCTCCGGTCAAA
                      ____________________________________________________________
consensus             GGCACTACTTTGCCGAACCGGGTCGATAGCCGTTCCGCCAAGACAAAGTCTCCGGTCAAA
 
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rJMSF011H22-          TTGAACGTCGGGAGCATACTGGGCCCTCTGGTCATAGCGAAGGTACAAACATAGGTGTTG
JMSF011H22+           TTGAACGTCGGGAGCATACTGGGCCCTCTGGTCATAGCGAAGGTACAAACATAGGTGTTG
                      ____________________________________________________________
consensus             TTGAACGTCGGGAGCATACTGGGCCCTCTGGTCATAGCGAAGGTACAAACATAGGTGTTG
 
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rJMSF011H22-          GTGATGTGAATTGCACAGAAGAATTTGGCAACACGGAAAGATTGAAGGAAAGCTTCTTTG
JMSF011H22+           GTGATGTGAATTGCACAGAAGAATTTGGCAACACGGAAAGATTGAAGGAAAGCTTCTTTG
                      ____________________________________________________________
consensus             GTGATGTGAATTGCACAGAAGAATTTGGCAACACGGAAAGATTGAAGGAAAGCTTCTTTG
 
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rJMSF011H22-          ATGAGAGGAGTCCATTTCTGCAGA-TTTCTACGCCCATTCTCGCTCTCTCATCTGCTT  
JMSF011H22+           ATGAGAGGAGTCCATTTCTGCAGATTTTCTACGCCCATTCTCGCTCTCTCATCTGCTTCG
                      ____________________________________________________________
consensus             ATGAGAGGAGTCCATTTCTGCAGATTTTCTACGCCCATTCTCGCTCTCTCATCTGCTTCG