Contig 013276:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011A17Sequence576013276 (6)ref|XP_006340083.1|3e-68PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]702012545 (8)ref|XP_009607855.1|4e-52PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMFF016I17Sequence540013276 (6)ref|XP_011080276.1|4e-75PREDICTED: signal recognition particle subunit SRP72-like [Sesamum indicum]786012545 (8)ref|XP_009607855.1|1e-71PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMSF005N21Sequence299013276 (6)ref|XP_006340083.1|2e-27PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]420012545 (8)ref|XP_004250878.1|4e-26PREDICTED: signal recognition particle subunit SRP72 [Solanum lycopersicum]
JMSF008G04Sequence374013276 (6)ref|XP_009789058.1|6e-65PREDICTED: LOW QUALITY PROTEIN: signal recognition particle subunit SRP72-like 789012545 (8)ref|XP_009607855.1|3e-87PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMSF011G24Sequence230013276 (6)ref|XP_006340083.1|6e-13PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]786012545 (8)ref|XP_009607855.1|6e-64PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMSF050B04Sequence647013276 (6)ref|XP_011080276.1|3e-99PREDICTED: signal recognition particle subunit SRP72-like [Sesamum indicum]773012545 (8)ref|XP_009607855.1|2e-71PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF008G04+ CTGGAAGCGCAATGGTCCATCAT
                      ____________________________________________________________
consensus CTGGAAGCGCAATGGTCCATCAT
 
. : . : . : . : . : . :
JMSF008G04+ TTTTCTCTATTAGCTTATCGATCTTCCTCAGACTATCAGAAACATCTTTAGGTCCCTTCA
                      ____________________________________________________________
consensus TTTTCTCTATTAGCTTATCGATCTTCCTCAGACTATCAGAAACATCTTTAGGTCCCTTCA
 
. : . : . : . : . : . :
JMSF008G04+ AAGCAATAAGGTTATTTATTGCGACTGCAAGTGAAGAGTCATCCGCCAAATTTCGTTTGA
                      ____________________________________________________________
consensus AAGCAATAAGGTTATTTATTGCGACTGCAAGTGAAGAGTCATCCGCCAAATTTCGTTTGA
 
. : . : . : . : . : . :
JMSF008G04+ TAAGACCAATATAAGATTCAAGCGCTTCTTGTCTGTTTCCAAGAATCTGCTGAACAAATG
                      ____________________________________________________________
consensus TAAGACCAATATAAGATTCAAGCGCTTCTTGTCTGTTTCCAAGAATCTGCTGAACAAATG
 
. : . : . : . : . : . :
JMSF008G04+ CCAATTGAACAGCTATAGGTGCCAATTCCAATTCAATATCTTCATCAGCTAGATTCTCTT
                      ____________________________________________________________
consensus CCAATTGAACAGCTATAGGTGCCAATTCCAATTCAATATCTTCATCAGCTAGATTCTCTT
 
. : . : . : . : . : . :
JMSF008G04+ CCATTAGTGATTCCTGACCAATTCTTCGTGCTGACAGTAGCAGTTGCTCAGCATCCTTGT
JMSF050B04+ TTCTTCGTGCTGACAGTAGCAGTTGCTCAGCATCCTTGT
                      ____________________________________________________________
consensus CCATTAGTGATTCCTGACCAATTCTTCGTGCTGACAGTAGCAGTTGCTCAGCATCCTTGT
 
. : . : . : . : . : . :
JMSF008G04+ ATTTCTGTCTTTCAATTAATGAGCACGCAGTGTTAAATGCCAACTCAAAAC
JMSF050B04+ ATTTCTGTCTTTCAATTAATGAGCACGCAGTGTTAAATGCCAACTCAAAACTGCTAGTTG
                      ____________________________________________________________
consensus ATTTCTGTCTTTCAATTAATGAGCACGCAGTGTTAAATGCCAACTCAAAACTGCTAGTTG
 
. : . : . : . : . : . :
JMSF050B04+ GCTTAACTCTGAGAGAGTCCAAAATTCCCTGCACTTCAGGAGCCCTT-CCAGCAGAAACC
JMFF016I17+ CCCTGCACTTCAGGAGCCCTT-CCAGCAGAAACC
JMFF011A17+ CCCTGCACTTCAGGAGCCCTTCCCAGCAGAAACC
                      ____________________________________________________________
consensus GCTTAACTCTGAGAGAGTCCAAAATTCCCTGCACTTCAGGAGCCCTT-CCAGCAGAAACC
 
. : . : . : . : . : . :
JMSF050B04+ AAGACAGCAACAATATTTATCTCCAGTGAGTCTATCTTGGACCTCTGGAGTTTATGATAA
JMFF016I17+ AAGACAGCAACAATATTTATCTCCAGTGAGTCTATCTTGGACCTCTGGAGTTTATGATAA
JMFF011A17+ AAGACAGCAACAATATTTATCTCCAGTGAGTCTATCTTGGACCTCTGGAGTTTATGATAA
                      ____________________________________________________________
consensus AAGACAGCAACAATATTTATCTCCAGTGAGTCTATCTTGGACCTCTGGAGTTTATGATAA
 
. : . : . : . : . : . :
JMSF050B04+ ATATCAACACACTCATCTGCTTTTCCCATACGATATAAAATCTGACATTCCAATAGCATT
JMFF016I17+ ATATCAACACACTCATCTGCTTTTCCCATACGATATAAAATCTGACATTCCAATAGCATT
JMFF011A17+ ATATCAACACACTCATCTGCTTTTCCCATACGATATAAAATCTGACATTCCAATAGCATT
                      ____________________________________________________________
consensus ATATCAACACACTCATCTGCTTTTCCCATACGATATAAAATCTGACATTCCAATAGCATT
 
. : . : . : . : . : . :
JMSF050B04+ TTTTCAGAATTTTCCTCTTGCCCCTTCAGAGTCTCCAGAGCTTCATCCAACTTGTTTTGT
JMFF016I17+ TTTTCAGAATTTTCCTCTTGCCCCTTCAGAGTCTCCAGAGCTTCATCCAACTTGTTTTGT
JMFF011A17+ TTTTCAGAATTTTCCTCTTGCCCCTTCAGAGTCTCCAGAGCTTCATCCAACTTGTTTTGT
                      ____________________________________________________________
consensus TTTTCAGAATTTTCCTCTTGCCCCTTCAGAGTCTCCAGAGCTTCATCCAACTTGTTTTGT
 
. : . : . : . : . : . :
JMSF050B04+ CGATATAAGCAATATGCCTTGAAGAAAGTGAAATCTATAGAAGTCTTCTTGGAACTATCC
JMFF016I17+ CGATATAAGCAATATGCCTTGAAGAAAGTGAAATCTATAGAAGTCTTCTTGGAACTATCC
JMSF005N21+ TGAAATCTATAGAAGTCTTCTNGGAACTATCC
JMFF011A17+ CGATATAAGCAATATGCCTTGAAGAAAGTGAAATCTATAGAAGTCTTCTTGGAACTATCC
                      ____________________________________________________________
consensus CGATATAAGCAATATGCCTTGAAGAAAGTGAAATCTATAGAAGTCTTCTTGGAACTATCC
 
. : . : . : . : . : . :
JMSF050B04+ TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
JMFF016I17+ TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
JMSF005N21+ TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
JMFF011A17+ TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
                      ____________________________________________________________
consensus TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
 
. : . : . : . : . : . :
JMSF050B04+ CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
JMFF016I17+ CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
JMSF005N21+ CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
JMFF011A17+ CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
JMSF011G24+ CCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
                      ____________________________________________________________
consensus CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
 
. : . : . : . : . : . :
JMSF050B04+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
JMFF016I17+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
JMSF005N21+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
JMFF011A17+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
JMSF011G24+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
                      ____________________________________________________________
consensus TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
 
. : . : . : . : . : . :
JMSF050B04+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
JMFF016I17+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
JMSF005N21+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
JMFF011A17+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
JMSF011G24+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
                      ____________________________________________________________
consensus ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
 
. : . : . : . : . : . :
JMSF050B04+ CAGTCTC
JMFF016I17+ CAGTCTCT
JMSF005N21+ CAGTCTCTGAATTCAGCGCAGCCCTT
JMFF011A17+ CAGTCTCTGAATTCAGCGCAGCCCTTGTCCAAGCATATACT
JMSF011G24+ CAGTCTCTGAATTCAGCGCAGCCCTTGTCCAAGCATATACTAGTCCGCTACCAGAGAGAG
                      ____________________________________________________________
consensus CAGTCTCTGAATTCAGCGCAGCCCTTGTCCAAGCATATACTAGTCCGCTACCAGAGAGAG