| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011A17 | Sequence | 576 | 013276 (6) | ref|XP_006340083.1| | 3e-68 | PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum] | 702 | 012545 (8) | ref|XP_009607855.1| | 4e-52 | PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif |
| JMFF016I17 | Sequence | 540 | 013276 (6) | ref|XP_011080276.1| | 4e-75 | PREDICTED: signal recognition particle subunit SRP72-like [Sesamum indicum] | 786 | 012545 (8) | ref|XP_009607855.1| | 1e-71 | PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif |
| JMSF005N21 | Sequence | 299 | 013276 (6) | ref|XP_006340083.1| | 2e-27 | PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum] | 420 | 012545 (8) | ref|XP_004250878.1| | 4e-26 | PREDICTED: signal recognition particle subunit SRP72 [Solanum lycopersicum] |
| JMSF008G04 | Sequence | 374 | 013276 (6) | ref|XP_009789058.1| | 6e-65 | PREDICTED: LOW QUALITY PROTEIN: signal recognition particle subunit SRP72-like | 789 | 012545 (8) | ref|XP_009607855.1| | 3e-87 | PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif |
| JMSF011G24 | Sequence | 230 | 013276 (6) | ref|XP_006340083.1| | 6e-13 | PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum] | 786 | 012545 (8) | ref|XP_009607855.1| | 6e-64 | PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif |
| JMSF050B04 | Sequence | 647 | 013276 (6) | ref|XP_011080276.1| | 3e-99 | PREDICTED: signal recognition particle subunit SRP72-like [Sesamum indicum] | 773 | 012545 (8) | ref|XP_009607855.1| | 2e-71 | PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif |
This contig is upended
. : . : . : . : . : . :
JMSF008G04+ CTGGAAGCGCAATGGTCCATCAT
____________________________________________________________
consensus CTGGAAGCGCAATGGTCCATCAT
. : . : . : . : . : . :
JMSF008G04+ TTTTCTCTATTAGCTTATCGATCTTCCTCAGACTATCAGAAACATCTTTAGGTCCCTTCA
____________________________________________________________
consensus TTTTCTCTATTAGCTTATCGATCTTCCTCAGACTATCAGAAACATCTTTAGGTCCCTTCA
. : . : . : . : . : . :
JMSF008G04+ AAGCAATAAGGTTATTTATTGCGACTGCAAGTGAAGAGTCATCCGCCAAATTTCGTTTGA
____________________________________________________________
consensus AAGCAATAAGGTTATTTATTGCGACTGCAAGTGAAGAGTCATCCGCCAAATTTCGTTTGA
. : . : . : . : . : . :
JMSF008G04+ TAAGACCAATATAAGATTCAAGCGCTTCTTGTCTGTTTCCAAGAATCTGCTGAACAAATG
____________________________________________________________
consensus TAAGACCAATATAAGATTCAAGCGCTTCTTGTCTGTTTCCAAGAATCTGCTGAACAAATG
. : . : . : . : . : . :
JMSF008G04+ CCAATTGAACAGCTATAGGTGCCAATTCCAATTCAATATCTTCATCAGCTAGATTCTCTT
____________________________________________________________
consensus CCAATTGAACAGCTATAGGTGCCAATTCCAATTCAATATCTTCATCAGCTAGATTCTCTT
. : . : . : . : . : . :
JMSF008G04+ CCATTAGTGATTCCTGACCAATTCTTCGTGCTGACAGTAGCAGTTGCTCAGCATCCTTGT
JMSF050B04+ TTCTTCGTGCTGACAGTAGCAGTTGCTCAGCATCCTTGT
____________________________________________________________
consensus CCATTAGTGATTCCTGACCAATTCTTCGTGCTGACAGTAGCAGTTGCTCAGCATCCTTGT
. : . : . : . : . : . :
JMSF008G04+ ATTTCTGTCTTTCAATTAATGAGCACGCAGTGTTAAATGCCAACTCAAAAC
JMSF050B04+ ATTTCTGTCTTTCAATTAATGAGCACGCAGTGTTAAATGCCAACTCAAAACTGCTAGTTG
____________________________________________________________
consensus ATTTCTGTCTTTCAATTAATGAGCACGCAGTGTTAAATGCCAACTCAAAACTGCTAGTTG
. : . : . : . : . : . :
JMSF050B04+ GCTTAACTCTGAGAGAGTCCAAAATTCCCTGCACTTCAGGAGCCCTT-CCAGCAGAAACC
JMFF016I17+ CCCTGCACTTCAGGAGCCCTT-CCAGCAGAAACC
JMFF011A17+ CCCTGCACTTCAGGAGCCCTTCCCAGCAGAAACC
____________________________________________________________
consensus GCTTAACTCTGAGAGAGTCCAAAATTCCCTGCACTTCAGGAGCCCTT-CCAGCAGAAACC
. : . : . : . : . : . :
JMSF050B04+ AAGACAGCAACAATATTTATCTCCAGTGAGTCTATCTTGGACCTCTGGAGTTTATGATAA
JMFF016I17+ AAGACAGCAACAATATTTATCTCCAGTGAGTCTATCTTGGACCTCTGGAGTTTATGATAA
JMFF011A17+ AAGACAGCAACAATATTTATCTCCAGTGAGTCTATCTTGGACCTCTGGAGTTTATGATAA
____________________________________________________________
consensus AAGACAGCAACAATATTTATCTCCAGTGAGTCTATCTTGGACCTCTGGAGTTTATGATAA
. : . : . : . : . : . :
JMSF050B04+ ATATCAACACACTCATCTGCTTTTCCCATACGATATAAAATCTGACATTCCAATAGCATT
JMFF016I17+ ATATCAACACACTCATCTGCTTTTCCCATACGATATAAAATCTGACATTCCAATAGCATT
JMFF011A17+ ATATCAACACACTCATCTGCTTTTCCCATACGATATAAAATCTGACATTCCAATAGCATT
____________________________________________________________
consensus ATATCAACACACTCATCTGCTTTTCCCATACGATATAAAATCTGACATTCCAATAGCATT
. : . : . : . : . : . :
JMSF050B04+ TTTTCAGAATTTTCCTCTTGCCCCTTCAGAGTCTCCAGAGCTTCATCCAACTTGTTTTGT
JMFF016I17+ TTTTCAGAATTTTCCTCTTGCCCCTTCAGAGTCTCCAGAGCTTCATCCAACTTGTTTTGT
JMFF011A17+ TTTTCAGAATTTTCCTCTTGCCCCTTCAGAGTCTCCAGAGCTTCATCCAACTTGTTTTGT
____________________________________________________________
consensus TTTTCAGAATTTTCCTCTTGCCCCTTCAGAGTCTCCAGAGCTTCATCCAACTTGTTTTGT
. : . : . : . : . : . :
JMSF050B04+ CGATATAAGCAATATGCCTTGAAGAAAGTGAAATCTATAGAAGTCTTCTTGGAACTATCC
JMFF016I17+ CGATATAAGCAATATGCCTTGAAGAAAGTGAAATCTATAGAAGTCTTCTTGGAACTATCC
JMSF005N21+ TGAAATCTATAGAAGTCTTCTNGGAACTATCC
JMFF011A17+ CGATATAAGCAATATGCCTTGAAGAAAGTGAAATCTATAGAAGTCTTCTTGGAACTATCC
____________________________________________________________
consensus CGATATAAGCAATATGCCTTGAAGAAAGTGAAATCTATAGAAGTCTTCTTGGAACTATCC
. : . : . : . : . : . :
JMSF050B04+ TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
JMFF016I17+ TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
JMSF005N21+ TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
JMFF011A17+ TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
____________________________________________________________
consensus TGGATACTCGCAAGAGCTCCATCTACGTTGTCATCTTTTATTAATGCCACTATTTTACAC
. : . : . : . : . : . :
JMSF050B04+ CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
JMFF016I17+ CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
JMSF005N21+ CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
JMFF011A17+ CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
JMSF011G24+ CCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
____________________________________________________________
consensus CGAATTGCATCCTCATCCCCAGGCGCAGCAGCAAGGATTTGATCCGCAACTTTGACGGCT
. : . : . : . : . : . :
JMSF050B04+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
JMFF016I17+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
JMSF005N21+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
JMFF011A17+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
JMSF011G24+ TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
____________________________________________________________
consensus TGTTGGTATTCCGATCGCTGGATGTGCCGATTAAGAGTGGTGAACAGATCCTCCAAGGAG
. : . : . : . : . : . :
JMSF050B04+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
JMFF016I17+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
JMSF005N21+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
JMFF011A17+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
JMSF011G24+ ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
____________________________________________________________
consensus ACGGCCGGCGCAGCCGCCGTCGACGGCTTCGGTTTCGGTTTGGGAGCCATCGGAAAACAG
. : . : . : . : . : . :
JMSF050B04+ CAGTCTC
JMFF016I17+ CAGTCTCT
JMSF005N21+ CAGTCTCTGAATTCAGCGCAGCCCTT
JMFF011A17+ CAGTCTCTGAATTCAGCGCAGCCCTTGTCCAAGCATATACT
JMSF011G24+ CAGTCTCTGAATTCAGCGCAGCCCTTGTCCAAGCATATACTAGTCCGCTACCAGAGAGAG
____________________________________________________________
consensus CAGTCTCTGAATTCAGCGCAGCCCTTGTCCAAGCATATACTAGTCCGCTACCAGAGAGAG