Contig 013275:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004B08Sequence239013275 (4)gb|KGN46630.1|3e-05hypothetical protein Csa_6G116140 [Cucumis sativus]241008654 (3)
JMSF010L03Sequence324013275 (4)ref|XP_009629140.1|1e-36PREDICTED: histone deacetylase 19 [Nicotiana tomentosiformis]750001431 (3)
JMSF011F23Sequence405013275 (4)ref|XP_011083370.1|2e-55PREDICTED: histone deacetylase 19 [Sesamum indicum] ref|XP_011083371.1| PREDICTE582001387 (33)gb|ACB05671.1|5e-52chloroplast ferredoxin [Capsicum annuum]
JMSF037B15Sequence682013275 (4)ref|XP_009629140.1|7e-129PREDICTED: histone deacetylase 19 [Nicotiana tomentosiformis]750001431 (3)

Alignment

This contig is upended


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JMSF037B15+                                               TGATGTATGTCAATGTCTACATAG
                      ____________________________________________________________
consensus                                                 TGATGTATGTCAATGTCTACATAG
 
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JMSF037B15+           AGAACCCGCTCATGCACTTTGAGGAGCTCTAATATGGCAAGCACTATGTCATTCACATAG
                      ____________________________________________________________
consensus             AGAACCCGCTCATGCACTTTGAGGAGCTCTAATATGGCAAGCACTATGTCATTCACATAG
 
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JMSF037B15+           CAAAAACCAGATGCTTCGCATTTCTTGGCATGATGCAATCCACCAGCCCAGTTTATAGCA
                      ____________________________________________________________
consensus             CAAAAACCAGATGCTTCGCATTTCTTGGCATGATGCAATCCACCAGCCCAGTTTATAGCA
 
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JMSF037B15+           ATATCACAATGTCCATGGTTTAATTTCACAGCCCCACCAACAGAACCTCCTGCATAAGTT
                      ____________________________________________________________
consensus             ATATCACAATGTCCATGGTTTAATTTCACAGCCCCACCAACAGAACCTCCTGCATAAGTT
 
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JMSF037B15+           TGACAGAAAGAGTAGAGACCGTCGAAAACAGGGCAGTCCTCACCAACATTAAATCGCTTC
                      ____________________________________________________________
consensus             TGACAGAAAGAGTAGAGACCGTCGAAAACAGGGCAGTCCTCACCAACATTAAATCGCTTC
 
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JMSF037B15+           AACTGCCTCAGATTATCTTGCTGTGTTTCTGGAGTTATGCTTCTCAAGAAAGTAACATAG
JMSF011F23+                                      TCTGGAGTTATGCTTCTCGAGAAAGTAACATAG
                      ____________________________________________________________
consensus             AACTGCCTCAGATTATCTTGCTGTGTTTCTGGAGTTATGCTTCTCGAGAAAGTAACATAG
 
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JMSF010L03+                                                                 ACATGC
JMSF037B15+           TCATCAGCATGAAACCTGCAAAGGTCCTTATCCCTTGCAGGATTAGGCTTGAGGACATGC
JMSF011F23+           TCATCAGCATGAAACCTGCAAAGGTCCTTATCCCTTGCAGGATTAGGCTTGAGGACATGC
                      ____________________________________________________________
consensus             TCATCAGCATGAAACCTGCAAAGGTCCTTATCCCTTGCAGGATTAGGCTTGAGGACATGC
 
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JMSF010L03+           ATATGCTGTAGAAGTCCATAATGTGCAAGAAGAGCATGTGTCATCCGAATTCTGTGTGGC
JMSF037B15+           ATATGCTGTAGAAGTCCATAATGTGCAAGAAGAGCATGTGTCATCCGAATTCTGTGTGGC
JMSF011F23+           ATATGCTGTAGAAGTCCATAATGTGCAAGAAGAGCATGTGTCATCCGAATTCTGTGTGGC
                      ____________________________________________________________
consensus             ATATGCTGTAGAAGTCCATAATGTGCAAGAAGAGCATGTGTCATCCGAATTCTGTGTGGC
 
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JMSF010L03+           TTCATAGGGTGGCCTTGCCCATAATAATAATTCCCAACTTCTGGGTCATAGAAATAACTG
JMSF004B08+                                                      GGTCATAGAAATAACTG
JMSF037B15+           TTCATAGGGTGGCCTTGCCCATAATAATAATTCCCAACTTCTGGGTCATAGAAATAACTG
JMSF011F23+           TTCATAGGGTGGCCTTGCCCATAATAATAATTCCCAACTTCTGGGTCATAGAAATAACTG
                      ____________________________________________________________
consensus             TTCATAGGGTGGCCTTGCCCATAATAATAATTCCCAACTTCTGGGTCATAGAAATAACTG
 
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JMSF010L03+           ACTTTTCGCTTCTTCCCATCTGGTCCAGACGGTAAGGAATTTCCTCCAGTATCCATCACC
JMSF004B08+           ACTTTTCGCTTCTTCCCATCTGGTCCAGACGGTAAGGAATTTCCTCCAGTATCCAT    
JMSF037B15+           ACTTTTCGCTTCTTCCCATCTGGTCCAGACGGTAAGGAATTTCCTCCAGTATCCATCACC
JMSF011F23+           ACTTTTCGCTTCTTCCCATCTGGTCCAGACGGTAAGGAATTTCCTCCAGTATCCATCACC
                      ____________________________________________________________
consensus             ACTTTTCGCTTCTTCCCATCTGGTCCAGACGGTAAGGAATTTCCTCCAGTATCCATCACC
 
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JMSF010L03+           TGGTCTCAGTATAAAGACGGTTCCTGAGCTTAATCTCTAGAATGTTAAAGCAAGTATGGC
JMSF037B15+           TGGTCTCAGTATAAAGACGGTTCCTGAGCTTAATCTCTAGAATGTTAAAGCAAGTATGGC
JMSF011F23+           TGGTCTCAGTATAAAGACGGTTCCTGAGCTTAATCTCTAGAATGTTAAAGCAAGTATGGC
                      ____________________________________________________________
consensus             TGGTCTCAGTATAAAGACGGTTCCTGAGCTTAATCTCTAGAATGTTAAAGCAAGTATGGC
 
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JMSF010L03+           CATCATCCACAACAAACTTTGAGCTAGCTTTGTTCCTCAGAGTGATAAATAGAAGAC   
JMSF037B15+           CATCATCCACAACAAACTTTGAGCTAGCTTTGTTCCTCAGAGTGATAAATAGAAGAC   
JMSF011F23+           CATCATCCACAACAAACTTTGAGCTAGCTTTGTTCCTCAGAGTGATAAATAGAAGACGGC
                      ____________________________________________________________
consensus             CATCATCCACAACAAACTTTGAGCTAGCTTTGTTCCTCAGAGTGATAAATAGAAGACGGC