| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS169E09 | Sequence | 615 | 013274 (9) | ref|XP_009766934.1| | 2e-61 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Nicotia | |||||
| JMSF011E07 | Sequence | 328 | 013274 (9) | 760 | 013274 (9) | ref|XP_006354192.1| | 2e-111 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic-like [So | |||
| JMSF028J23 | Sequence | 645 | 013274 (9) | ref|XP_009766934.1| | 3e-67 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Nicotia | 724 | 013274 (9) | ref|XP_009766934.1| | 3e-91 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Nicotia |
| JMSF043E09 | Sequence | 742 | 013274 (9) | ref|XP_009766934.1| | 2e-91 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Nicotia | 824 | 013274 (9) | ref|XP_006354192.1| | 5e-112 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic-like [So |
| JMSF050A18 | Sequence | 641 | 013274 (9) | ref|XP_009766934.1| | 5e-66 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Nicotia | 730 | 013274 (9) | ref|XP_009766934.1| | 2e-102 | PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Nicotia |
This contig is upended
. : . : . : . : . : . :
rJMSF028J23- TAGTTTTTGAGCATCAAAGTATGTTTCTCATTGAAATTCTAGCTTGTAAAATGGG
rJMSF050A18- TTTTGAGCATCAAAGTATGTTTCTCATTGAAATTCTAGCTTGTAAAATGGG
rJMSF011E07- TTTTGAGCATCAAAGTATGTTTCTCATTGAAATTCTAGCTTGTAAAATGGG
rJMSF043E09- AAGTATGTTTCTCATTGAAATTCTAGCTTGTAAAATGGG
____________________________________________________________
consensus TAGTTTTTGAGCATCAAAGTATGTTTCTCATTGAAATTCTAGCTTGTAAAATGGG
. : . : . : . : . : . :
rJMSF028J23- TAATAAGAATGACTATTACATGCACTTGTGTTCTTAATGTAAACAACTATCATAAATAGG
rJMSF050A18- TAATAAGAATGACTATTACATGCACTTGTGTTCTTAATGTAAACAACTATCATAAATAGG
rJMSF011E07- TAATAAGAATGACTATTACATGCACTTGTGTTCTTAATGTAAACAACTATCATAAATAGG
rJMSF043E09- TAATAAGAATGACTATTACATGCACTTGTGTTCTTAATGTAAACAACTATCATAAATAGG
____________________________________________________________
consensus TAATAAGAATGACTATTACATGCACTTGTGTTCTTAATGTAAACAACTATCATAAATAGG
. : . : . : . : . : . :
rJMSF028J23- ATTCTTAGCTTGCTGGAGTTGCCTTATCATTTCTGGTTTGATCCATCAACGCGCACGTGA
rJMSF050A18- ATTCTTAGCTTGCTGGAGTTGCCTTATCATTTCTGGTTTGATCCATCAACGCGCACGTGA
rJMSF011E07- ATTCTTAGCTTGCTGGAGTTGCCTTATCATTTCTGGTTTGATCCATCAACGCGCACGTGA
rJMSF043E09- ATTCTTAGCTTGCTGGAGTTGCCTTATCATTTCTGGTTTGATCCATCAACGCGCACGTGA
____________________________________________________________
consensus ATTCTTAGCTTGCTGGAGTTGCCTTATCATTTCTGGTTTGATCCATCAACGCGCACGTGA
. : . : . : . : . : . :
rJMSF028J23- ACGAACACAATTTTGTTGTATCCACGCGAAATTCTGATCTTCTCATCAACATATAGTAAC
rJMSF050A18- ACGAACACAATTTTGTTGTATCCACGCGAAATTCTGATCTTCTCATCAACATATAGTAAC
rJMSF011E07- ACGAACACAATTTTGTTGTATCCACGCGAAATTCTGATCTTCTCATCAACATATAGTAAC
rJMSF043E09- ACGAACACAATTTTGTTGTATCCACGCGAAATTCTGATCTTCTCATCAACATATAGTAAC
____________________________________________________________
consensus ACGAACACAATTTTGTTGTATCCACGCGAAATTCTGATCTTCTCATCAACATATAGTAAC
. : . : . : . : . : . :
rJMSF028J23- TCCAAGACGAAGTTGCTTCTCAGTTCGGTAGGAAGTCCATAAGGCCCAGCTATGATGGCT
rJMSF050A18- TCCAAGACGAAGTTGCTTCTCAGTTCGGTAGGAAGTCCATAAGGCCCAGCTATGATGGCT
rJMSF011E07- TCCAAGACGAAGTTGCTTCTCAGTTCGGTAGGAAGTCCATAAGGCCCAGCTATGATGGCT
rJMSF043E09- TCCAAGACGAAGTTGCTTCTCAGTTCGGTAGGAAGTCCATAAGGCCCAGCTATGATGGCT
____________________________________________________________
consensus TCCAAGACGAAGTTGCTTCTCAGTTCGGTAGGAAGTCCATAAGGCCCAGCTATGATGGCT
. : . : . : . : . : . :
rJMSF028J23- CCATCATCCATTGCGAGATCGTATGTGTTGCCACCCGATTTAGAGTATGTGCCAGTCATG
rJMSF050A18- CCATCATCCATTGCGAGATCGTATGTGTTGCCACCCGATTTAGAGTATGTGCCAGTCATG
rJMSF011E07- CCATCATCCATTGCGAGATCGTATGTGTTGCCACCCGATTTAGAGTATGTGCCAGTCATG
rJMSF043E09- CCATCATCCATTGCGAGATCGTATGTGTTGCCACCCGATTTAGAGTATGTGCCAGTCATG
____________________________________________________________
consensus CCATCATCCATTGCGAGATCGTATGTGTTGCCACCCGATTTAGAGTATGTGCCAGTCATG
. : . : . : . : . : . :
rJMSF028J23- GAGAATTTGCAGCCAAGGAATAAGTTCACGACAAACTTGAGTTGGCCGTTTGGTTTGACA
rJMSF050A18- GAGAATTTGCAGCCAAGGAATAAGTTCACGACAAACTTGAGTTGGCCGTTTGGTTTGACA
rJMSF011E07- GAGAATTTGCAGCCAAGGAATAAGTTCACGACAAACTTGAGTTGGCCGTTTGGTTTGACA
rJMSF043E09- GAGAATTTGCAGCCAAGGAATAAGTTCACGACAAACTTGAGTTGGCCGTTTGGTTTGACA
____________________________________________________________
consensus GAGAATTTGCAGCCAAGGAATAAGTTCACGACAAACTTGAGTTGGCCGTTTGGTTTGACA
. : . : . : . : . : . :
rJMSF028J23- ATCTGCATTCCCATTAGACCATTTGAAGCATTCTCTATCCAACTATCAGTTTCAACCTGG
rJMSF050A18- ATCTGCATTCCCATTAGACCATTTGAAGCATTCTCTATCCAACTATCAGTTTCAACCTGG
rJMSF011E07- ATCTGCATTCCCATTAGACCATTTGAAGCATTCTCTATCCAACTATCAGTTTCAACCTGG
rJMSF043E09- ATCTGCATTCCCATTAGACCATTTGAAGCATTCTCTATCCAACTATCAGTTTCAACCTGG
____________________________________________________________
consensus ATCTGCATTCCCATTAGACCATTTGAAGCATTCTCTATCCAACTATCAGTTTCAACCTGG
. : . : . : . : . : . :
rJMSF028J23- GAGCTCCATATCATTTGCCATTCTCCTTCAATAAGCTCCAGTTCACTGTTTCCATCCTTT
rJMSF050A18- GAGCTCCATATCATTTGCCATTCTCCTTCAATAAGCTCCAGTTCACTGTTTCCATCCTTT
rJMSF011E07- GAGCTCCATATCATTTGCCATTCTCCTTCAATAAGCTCCAGTTCACTGTTTCCATCCTTT
rJMSF043E09- GAGCTCCATATCATTTGCCATTCTCCTTCAATAAGCTCCAGTTCACTGTTTCCATCCTTT
____________________________________________________________
consensus GAGCTCCATATCATTTGCCATTCTCCTTCAATAAGCTCCAGTTCACTGTTTCCATCCTTT
. : . : . : . : . : . :
rJMSF028J23- TGATTGGATGAGATGAACTCATCGATTGCCTCGGCTACCCTTTTGCCTTTGGATATGACA
rJMSF050A18- TGATTGGATGAGATGAACTCATCGATTGCCTCGGCTACCCTTTTGCCTTTGGATATGACA
rJMSF011E07- TGATTGGATGAGATGAACTCATCGATTGCCTCGGCTACCCTTTTGCCTTTGGATATGACA
rJMSF043E09- TGATTGGATGAGATGAACTCATCGATTGCCTCGGCTACCCTTTTGCCTTTGGATATGACA
____________________________________________________________
consensus TGATTGGATGAGATGAACTCATCGATTGCCTCGGCTACCCTTTTGCCTTTGGATATGACA
. : . : . : . : . : . :
rJMSF028J23- GACAGAAATCTTTGCCTTGGGTCTGTTTCTTTTTGGAGAACAAATGTGGTTCCTTTATTC
rJMSF050A18- GACAGAAATCTTTGCCTTGGGTCTGTTTCTTTTTGGAGAACAAATGTGGTTCCTTTATTC
rJMSF011E07- GACAGAAATCTTTGCCTTGGGTCTGTTTCTTTTTGGAGAACAAATGTGGTTCCTTTATTC
rJMSF043E09- GACAGAAATCTTTGCCTTGGGTCTGTTTCTTTTTGGAGAACAAATGTGGTTCCTTTATTC
____________________________________________________________
consensus GACAGAAATCTTTGCCTTGGGTCTGTTTCTTTTTGGAGAACAAATGTGGTTCCTTTATTC
. : . : . : . : . : . :
rJMSF028J23- CCTCTTGAAATGCGAAGGTTTCCAGTTTGTGAC-AATATGTCGTGTCTAGCCAGCCCTTA
rJMSF050A18- CCTCTTGAAATGCGAAGGTTTCCAGTTTGTGACAAATATGTCGTGTCTAGCCAGCCCTTA
rJMSF011E07- CCTCTTGAAATGCGAAGGTTTCCAGTTTGTGACAAATATGTCGTGTCTAGCCAGCCCTTA
rJMSF043E09- CCTCTTGAAATGCGAAGGTTTCCAGTTTGTGACAAATATGTCGTGTCTAGCCAGCCCTTA
____________________________________________________________
consensus CCTCTTGAAATGCGAAGGTTTCCAGTTTGTGACAAATATGTCGTGTCTAGCCAGCCCTTA
. : . : . : . : . : . :
rJMSF011E07- GCTTCATCCCCAAGAAGTCTGAAAGGTACTGGATATGGAACCTTGAA
rJMSF043E09- GCTTCATCCCCAAGAAGTCTGAAAGGTACTGGATATGGAACCTTGAAAGGGCAGAAACTT
JMSF043E09+ CCCCAAGAAGTCTGAAAGGTACTGGATATGGAACCTTG-AAGGGCAGAAACTT
____________________________________________________________
consensus GCTTCATCCCCAAGAAGTCTGAAAGGTACTGGATATGGAACCTTGAAAGGGCAGAAACTT
. : . : . : . : . : . :
rJMSF043E09- GAAAGAGAAAGCAGCTTTATCAAACTGGAAAAGAATCCTTTCTCCATC
JMSF043E09+ GAAAGAGAAAGCAGCTTTATCAAACTGGAAAAGAATCCTTTCTCCATCTTTTACTGCTGC
JMSF050A18+ ACTGCTGC
JMSF028J23+ ACTGCTGC
____________________________________________________________
consensus GAAAGAGAAAGCAGCTTTATCAAACTGGAAAAGAATCCTTTCTCCATCTTTTACTGCTGC
. : . : . : . : . : . :
JMSF043E09+ CGCCGCCTCAACTTTCAGTTCCCCTATTACATCAGAGAATCTCACAATGTTGGACACGCG
JMSF050A18+ CGCCGCCTCAACTTTCAGTTCCCCTATTACATCAGAGAATCTCACAATGTTGGACACGCG
JMFS169E09+ CCCCTATTACATCAGAGAATCTCACAATGTTGGACACGCG
JMSF028J23+ CGCCGCCTCAACTTTCAGTTCCCCTATTACATCAGAGAATCTCACAATGTTGGACACGCG
____________________________________________________________
consensus CGCCGCCTCAACTTTCAGTTCCCCTATTACATCAGAGAATCTCACAATGTTGGACACGCG
. : . : . : . : . : . :
JMSF043E09+ GGGATCATCTGTTTGAAGAAACACCTCTTGGAATACACTGAACGAGTCTACACCAACAAA
JMSF050A18+ GGGATCATCTGTTTGAAGAAACACCTCTTGGAATACACTGAACGAGTCTACACCAACAAA
JMFS169E09+ GGGATCATCTGTTTGAAGAAACACCTCTTGGAATACACTGAACGAGTCTACACCAACAAA
JMSF028J23+ GGGATCATCTGTTTGAAGAAACACCTCTTGGAATACACTGAACGAGTCTACACCAACAAA
____________________________________________________________
consensus GGGATCATCTGTTTGAAGAAACACCTCTTGGAATACACTGAACGAGTCTACACCAACAAA
. : . : . : . : . : . :
JMSF043E09+ TGTCCTCTGTATTGGCGACGCTGTTCCCGGCCTAGTCGTGAACATTAACTGCCATCTGCC
JMSF050A18+ TGTCCTCTGTATTGGCGACGCTGTTCCCGGCCTAGTCGTGAACATTAACTGCCATCTGCC
JMFS169E09+ TGTCCTCTGTATTGGCGACGCTGTTCCCGGCCTAGTCGTGAACATTAACTGCCATCTGCC
JMSF028J23+ TGTCCTCTGTATTGGCGACGCTGTTCCCGGCCTAGTCGTGAACATTAACTGCCATCTGCC
____________________________________________________________
consensus TGTCCTCTGTATTGGCGACGCTGTTCCCGGCCTAGTCGTGAACATTAACTGCCATCTGCC
. : . : . : . : . : . :
JMSF043E09+ CTCAATCAAGCTTGAGCTTGTTGGATTACTAATGCCTTCCAAACCTTCCAGAATCCTCAC
JMSF050A18+ CTCAATCAAGCTTGAGCTTGTTGGATTACTAATGCCTTCCAAACCTTCCAGAATCCTCAC
JMFS169E09+ CTCAATCAAGCTTGAGCTTGTTGGATTACTAATGCCTTCCAAACCTTCCAGAATCCTCAC
JMSF028J23+ CTCAATCAAGCTTGAGCTTGTTGGATTACTAATGCCTTCCAAACCTTCCAGAATCCTCAC
____________________________________________________________
consensus CTCAATCAAGCTTGAGCTTGTTGGATTACTAATGCCTTCCAAACCTTCCAGAATCCTCAC
. : . : . : . : . : . :
JMSF043E09+ AGCTTTTTCAACCTCCTGAAGCTGCTGCGGAGAAGCGGAGCGGCCGCGGCCCTGGATGCC
JMSF050A18+ AGCTTTTTCAACCTCCTGAAGCTGCTGCGGAGAAGCGGAGCGGCCGCGGCCCTGGATGCC
JMFS169E09+ AGCTTTTTCAACCTCCTGAAGCTGCTGCGGAGAAGCGGAGCGGCCGCGGCCCTGGATGCC
JMSF028J23+ AGCTTTTTCAACCTCCTGAAGCTGCTGCGGAGAAGCGGAGCGGCCGCGGCCCTGGATGCC
____________________________________________________________
consensus AGCTTTTTCAACCTCCTGAAGCTGCTGCGGAGAAGCGGAGCGGCCGCGGCCCTGGATGCC
. : . : . : . : . : . :
JMSF043E09+ AATGAGAGCTTCGATCAGTGAATTCTCTTCTTTGGTGAACGGAGAAGAAGAAGACAACGA
JMSF050A18+ AATGAGAGCTTCGATCAGTGAATTCTCTTCTTTGGTGAACGGAGAAGAAGAAGACAACGA
JMFS169E09+ AATGAGAGCTTCGATCAGTGAATTCTCTTCTTTGGTGAACGGAGAAGAAGAAGACAACGA
JMSF028J23+ AATGAGAGCTTCGATCAGTGAATTCTCTTCTTTGGTGAACGGAGAAGAAGAAGACAACGA
JMSF011E07+ TGGTGAACGGAGAAGAAGAAGACAACGA
____________________________________________________________
consensus AATGAGAGCTTCGATCAGTGAATTCTCTTCTTTGGTGAACGGAGAAGAAGAAGACAACGA
. : . : . : . : . : . :
JMSF043E09+ GGAAGGAGCCTCGGGTTGCTGCTGATCGACGAGAGAGCACCTTAGGGATTTCCGATTAGG
JMSF050A18+ GGAAGGAGCCTCGGGTTGCTGCTGATCGACGAGAGAGCACCTTAGGGATTTCCGATTAGG
JMFS169E09+ GGAAGGAGCCTCGGGTTGCTGCTGATCGACGAGAGAGCACCTTAGGGATTTCCGATTAGG
JMSF028J23+ GGAAGGAGCCTCGGGTTGCTGCTGATCGACGAGAGAGCACCTTAGGGATTTCCGATTAGG
JMSF011E07+ GGAAGGAGCCTCGGGTTGCTGCTGATCGACGAGAGAGCACCTTAGGGATTTCCGATTAGG
____________________________________________________________
consensus GGAAGGAGCCTCGGGTTGCTGCTGATCGACGAGAGAGCACCTTAGGGATTTCCGATTAGG
. : . : . : . : . : . :
JMSF043E09+ GTTGTTTTGGGCCACAACTCGCCTCCACGGCCCAGGTTTACTCGGGCTGAGTGTCGGGCC
JMSF050A18+ GTTGTTTTGGGCCACAACTCGCCTCCACGGCCCAGGTTTACTCGGGCTGAGTGTCGGGCC
JMFS169E09+ GTTGTTTTGGGCCACAACTCGCCTCCACGGCCCAGGTTTACTCGGGCTGAGTGTCGGGCC
JMSF028J23+ GTTGTTTTGGGCCACAACTCGCCTCCACGGCCCAGGTTTACTCGGGCTGAGTGTCGGGCC
JMSF011E07+ GTTGTTTTGGGCCACAACTCGCCTCCACGGCCCAGGTTTACTCGGGCTGAGTGTCGGGCC
____________________________________________________________
consensus GTTGTTTTGGGCCACAACTCGCCTCCACGGCCCAGGTTTACTCGGGCTGAGTGTCGGGCC
. : . : . : . : . : . :
JMSF043E09+ TGTCTTGAACCAAAAGGAAAAGCCTGTGTTTGCAATTTCAACTGCCGCCATTGCAGATCT
JMSF050A18+ TGTCTTGAACCAAAAGGAAAAGCCTGTGTTTGCAATTTCAACTGCCGCCATTGCAGATCT
JMFS169E09+ TGTCTTGAACCAAAAGGAAAAGCCTGTGTTTGCAATTTCAACTGCCGCCATTGCAGATCT
JMSF028J23+ TGTCTTGAACCAAAAGGAAAAGCCTGTGTTTGCAATTTCAACTGCCGCCATTGCAGATCT
JMSF011E07+ TGTCTTGAACCAAAAGGAAAAGCCTGTGTTTGCAATTTCAACTGCCGCCATTGCAGATCT
____________________________________________________________
consensus TGTCTTGAACCAAAAGGAAAAGCCTGTGTTTGCAATTTCAACTGCCGCCATTGCAGATCT
. : . : . : . : . : . :
JMSF043E09+ GAAGAGACCACCGGCGGGGAATAGTGGAGGCGGCGGTGACGGTGAAGGGTGGTGGGAGAG
JMSF050A18+ GAAGAGACCACCGGCGGGGAATAGTGGCGGCGGCGGTGACGGTGAAGGGTGGTGGGAGAG
JMFS169E09+ GAAGAGACCACCGGCGGGGAATAGTGGCGGCGGCGGTGACGGTGAAGGGTGGTGGGAGAG
JMSF028J23+ GAAGAGACCACCGGCGGGGAATAGTGGCGGCGGCGGTGACGGTGAAGGGTGGTGGGAGAG
JMSF011E07+ GAAGAGACCACCGGCGGGGAATAGTGGCGGCGGCGGTGACGGTGAAGGGTGGTGGGAGAG
____________________________________________________________
consensus GAAGAGACCACCGGCGGGGAATAGTGGCGGCGGCGGTGACGGTGAAGGGTGGTGGGAGAG
. : . : . : . : . : . :
JMSF043E09+ GCAGAGTGTGTGTCTAGGAATGAACCGTT
JMSF050A18+ GCAGAGTGTGTGTCTAGGAATGAACCGTT
JMFS169E09+ GCAGAGTGTGTGTCTAGGAATGAA
JMSF028J23+ GCAGAGTGTGTGTCTAGGAATGAACCGTT
JMSF011E07+ GCAGAGTGTGTGTCTAGGAATGAACCGTTAACGACAACCTCAACGAACTTGTCAGAATTC
____________________________________________________________
consensus GCAGAGTGTGTGTCTAGGAATGAACCGTTAACGACAACCTCAACGAACTTGTCAGAATTC