Contig 013271:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049D19Sequence634013271 (5)599013997 (6)dbj|BAP19108.1|7e-102elongation factor 1 gamma-like protein, partial [Ipomoea nil]
JMSF001J22Sequence252013271 (5)
JMSF010N16Sequence111013271 (5)
JMSF010O16Sequence205013271 (5)
JMSF050F04Sequence258013271 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF049D19+ AAATCATCAATAAATCAA
                      ____________________________________________________________
consensus AAATCATCAATAAATCAA
 
. : . : . : . : . : . :
JMFF049D19+ TAGTTTTTTTTAATGCTCATGTCTTTCAAGCATAAAATTATGTAAGCAACAAAAATATTC
                      ____________________________________________________________
consensus TAGTTTTTTTTAATGCTCATGTCTTTCAAGCATAAAATTATGTAAGCAACAAAAATATTC
 
. : . : . : . : . : . :
JMFF049D19+ ATTTGAAGCCTGNAAGGGAAAATTTGCTCTCCAAAAAATCCTAAATATAAAATATACAAA
                      ____________________________________________________________
consensus ATTTGAAGCCTGNAAGGGAAAATTTGCTCTCCAAAAAATCCTAAATATAAAATATACAAA
 
. : . : . : . : . : . :
JMFF049D19+ TTTAGAAAAAGAAAAATAATAAAGTTACTATGGCACTGCATTCTCCCATTCCTGAACACA
                      ____________________________________________________________
consensus TTTAGAAAAAGAAAAATAATAAAGTTACTATGGCACTGCATTCTCCCATTCCTGAACACA
 
. : . : . : . : . : . :
rJMSF010N16+ AA
JMFF049D19+ CAAAATTGAGCCACTGCCCATTTTACAGCAGGAGAGTCCATACACACTCCACTGTAAAAA
                      ____________________________________________________________
consensus CAAAATTGAGCCACTGCCCATTTTACAGCAGGAGAGTCCATACACACTCCACTGTAAAAA
 
. : . : . : . : . : . :
rJMSF010N16+ ACCAGAAAAAAACAAAGCATGCNCACNCATAAAACTNGCATNGTGTATGGAAAGAACAAG
JMFF049D19+ ACCAGAAAAAAACAAAGCATGCACACACATAAAACTAGCATCGTGTATGGAAAGAACAAG
                      ____________________________________________________________
consensus ACCAGAAAAAAACAAAGCATGCACACACATAAAACTAGCATCGTGTATGGAAAGAACAAG
 
. : . : . : . : . : . :
rJMSF010N16+ TGCAGCATCTGATCAAGAAAT
JMFF049D19+ TGCAGCATCTGATCAAGAAATACAAGACACTCATAAAAGAAAATTTACAAAAATACAGAT
                      ____________________________________________________________
consensus TGCAGCATCTGATCAAGAAATACAAGACACTCATAAAAGAAAATTTACAAAAATACAGAT
 
. : . : . : . : . : . :
JMSF001J22+ TGTAGCCCCCCAAGTTTA
JMFF049D19+ TACAGCATTTCTCATAACCAGATTXXXXXXXXXXXXXXXXXXTGTAGCCCCCCAAGTTTA
JMSF050F04+ TGTAGCCCCCCAAGTTTA
                      ____________________________________________________________
consensus TACAGCATTTCTCATAACCAGATTNNNNNNNNNNNNNNNNNNTGTAGCCCCCCAAGTTTA
 
. : . : . : . : . : . :
JMSF001J22+ AGGTATAATGATCAACAATTCAATGCATCTTCTTGAAGCAAATGTACAAAGCATTAAAAA
JMFF049D19+ AGGTATAATGATCAACAATTCAATGCATCTTCTTGAAGCAAATGTACAAAGCATTAAAAA
JMSF050F04+ AGGTATAATGATCAACAATTCAATGCATCTTCTTGAAGCAAATGTACAAAGCATTAAAAA
JMSF010O16+ AAGCAAATGTACAAAGCATTAAAAA
                      ____________________________________________________________
consensus AGGTATAATGATCAACAATTCAATGCATCTTCTTGAAGCAAATGTACAAAGCATTAAAAA
 
. : . : . : . : . : . :
JMSF001J22+ TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
JMFF049D19+ TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
JMSF050F04+ TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
JMSF010O16+ TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
                      ____________________________________________________________
consensus TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
 
. : . : . : . : . : . :
JMSF001J22+ GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
JMFF049D19+ GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
JMSF050F04+ GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
JMSF010O16+ GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
                      ____________________________________________________________
consensus GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
 
. : . : . : . : . : . :
JMSF001J22+ AC
JMFF049D19+ ACCCAAAACTGCTACT
JMSF050F04+ ACCCAAAACTGCTACT
JMSF010O16+ ACCCAAAACTGCTACTGATCAAGAATCAAGTATAAAAGAGAAGATCTTAAGGATTCACTC
                      ____________________________________________________________
consensus ACCCAAAACTGCTACTGATCAAGAATCAAGTATAAAAGAGAAGATCTTAAGGATTCACTC