Contig 013271:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049D19+                                                     AAATCATCAATAAATCAA
                      ____________________________________________________________
consensus                                                       AAATCATCAATAAATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049D19+           TAGTTTTTTTTAATGCTCATGTCTTTCAAGCATAAAATTATGTAAGCAACAAAAATATTC
                      ____________________________________________________________
consensus             TAGTTTTTTTTAATGCTCATGTCTTTCAAGCATAAAATTATGTAAGCAACAAAAATATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049D19+           ATTTGAAGCCTGNAAGGGAAAATTTGCTCTCCAAAAAATCCTAAATATAAAATATACAAA
                      ____________________________________________________________
consensus             ATTTGAAGCCTGNAAGGGAAAATTTGCTCTCCAAAAAATCCTAAATATAAAATATACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049D19+           TTTAGAAAAAGAAAAATAATAAAGTTACTATGGCACTGCATTCTCCCATTCCTGAACACA
                      ____________________________________________________________
consensus             TTTAGAAAAAGAAAAATAATAAAGTTACTATGGCACTGCATTCTCCCATTCCTGAACACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010N16+                                                                    AA
JMFF049D19+           CAAAATTGAGCCACTGCCCATTTTACAGCAGGAGAGTCCATACACACTCCACTGTAAAAA
                      ____________________________________________________________
consensus             CAAAATTGAGCCACTGCCCATTTTACAGCAGGAGAGTCCATACACACTCCACTGTAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010N16+          ACCAGAAAAAAACAAAGCATGCNCACNCATAAAACTNGCATNGTGTATGGAAAGAACAAG
JMFF049D19+           ACCAGAAAAAAACAAAGCATGCACACACATAAAACTAGCATCGTGTATGGAAAGAACAAG
                      ____________________________________________________________
consensus             ACCAGAAAAAAACAAAGCATGCACACACATAAAACTAGCATCGTGTATGGAAAGAACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010N16+          TGCAGCATCTGATCAAGAAAT                                       
JMFF049D19+           TGCAGCATCTGATCAAGAAATACAAGACACTCATAAAAGAAAATTTACAAAAATACAGAT
                      ____________________________________________________________
consensus             TGCAGCATCTGATCAAGAAATACAAGACACTCATAAAAGAAAATTTACAAAAATACAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001J22+                                                     TGTAGCCCCCCAAGTTTA
JMFF049D19+           TACAGCATTTCTCATAACCAGATTXXXXXXXXXXXXXXXXXXTGTAGCCCCCCAAGTTTA
JMSF050F04+                                                     TGTAGCCCCCCAAGTTTA
                      ____________________________________________________________
consensus             TACAGCATTTCTCATAACCAGATTNNNNNNNNNNNNNNNNNNTGTAGCCCCCCAAGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001J22+           AGGTATAATGATCAACAATTCAATGCATCTTCTTGAAGCAAATGTACAAAGCATTAAAAA
JMFF049D19+           AGGTATAATGATCAACAATTCAATGCATCTTCTTGAAGCAAATGTACAAAGCATTAAAAA
JMSF050F04+           AGGTATAATGATCAACAATTCAATGCATCTTCTTGAAGCAAATGTACAAAGCATTAAAAA
JMSF010O16+                                              AAGCAAATGTACAAAGCATTAAAAA
                      ____________________________________________________________
consensus             AGGTATAATGATCAACAATTCAATGCATCTTCTTGAAGCAAATGTACAAAGCATTAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001J22+           TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
JMFF049D19+           TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
JMSF050F04+           TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
JMSF010O16+           TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
                      ____________________________________________________________
consensus             TTTAGGTTCTAGACATGAAAACATCAGCAAAAGGGATCATCTTTTAGTCAAAGGCAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001J22+           GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
JMFF049D19+           GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
JMSF050F04+           GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
JMSF010O16+           GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
                      ____________________________________________________________
consensus             GCTATATATATAATTTTCCAGCAAAACGCAACATTATCAACAAATTAGCAAACGGATAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001J22+           AC                                                          
JMFF049D19+           ACCCAAAACTGCTACT                                            
JMSF050F04+           ACCCAAAACTGCTACT                                            
JMSF010O16+           ACCCAAAACTGCTACTGATCAAGAATCAAGTATAAAAGAGAAGATCTTAAGGATTCACTC
                      ____________________________________________________________
consensus             ACCCAAAACTGCTACTGATCAAGAATCAAGTATAAAAGAGAAGATCTTAAGGATTCACTC