Contig 013269:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020A15Sequence191013269 (3)448012295 (2)
JMSF010M17Sequence313013269 (3)756012295 (2)emb|CBI24277.3|6e-68unnamed protein product [Vitis vinifera]
JMSF018F05Sequence424013269 (3)703013399 (29)ref|XP_009804090.1|5e-69PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF018F05-                                             AAGGGGGCTTTCTGAATTTCCTTGCC
                      ____________________________________________________________
consensus                                               AAGGGGGCTTTCTGAATTTCCTTGCC
 
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JMSF018F05-           GCCCCTCCCCCTACCTCGTCCGCCGTTTTTGACAAAATCCTGAGGCTCAAACGTCACGGC
                      ____________________________________________________________
consensus             GCCCCTCCCCCTACCTCGTCCGCCGTTTTTGACAAAATCCTGAGGCTCAAACGTCACGGC
 
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JMSF018F05-           TGGCCGCTCTAGAGTTGGAGGCGCGGCAACGACTGTGGAAGTAGAGGCTGAGAAGACCCT
JMSF010M17+                                                          CTGAGAAGACCCT
                      ____________________________________________________________
consensus             TGGCCGCTCTAGAGTTGGAGGCGCGGCAACGACTGTGGAAGTAGAGGCTGAGAAGACCCT
 
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JMSF018F05-           GAACGCAACGGCTGAAGAGGAGGCAGTGAAGCGGTGCGGTTGGAAGACGGTTGGGGAAAT
JMSF010M17+           GAACGCAACGGCTGAAGAGGAGGCAGTGAAGCGGTGCGGTTGGAAGACGGTTGGGGAAAT
                      ____________________________________________________________
consensus             GAACGCAACGGCTGAAGAGGAGGCAGTGAAGCGGTGCGGTTGGAAGACGGTTGGGGAAAT
 
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JMFF020A15+                                   CGACGGAAGGAAGGATTCCATCAAAAGAAAACAGGC
JMSF018F05-           GAGCGTAGGTTTCACTGCGAGTTTCGACGGAAGGAAGGATTCCATCAAAAGAAAACAGGC
JMSF010M17+           GAGCGTAGGTTTCACTGCGAGTTTCGACGGAAGGAAGGATTCCATCAAAAGAAAACAGGC
                      ____________________________________________________________
consensus             GAGCGTAGGTTTCACTGCGAGTTTCGACGGAAGGAAGGATTCCATCAAAAGAAAACAGGC
 
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JMFF020A15+           GGACTTGAGAAGAAAAGCCCCCAGATTTTGAAATGCAATGTGTAATTCCTTCTGGAGCCG
JMSF018F05-           GGACTTGAGAAGAAAAGCCCCCAGATTTTGAAATGCAATGTGTAATTCCTTCTGGAGCCG
JMSF010M17+           GGACTTGAGAAGAAAAGCCCCCAGATTTTGAAATGCAATGTGTAATTCCTTCTGGAGCCG
                      ____________________________________________________________
consensus             GGACTTGAGAAGAAAAGCCCCCAGATTTTGAAATGCAATGTGTAATTCCTTCTGGAGCCG
 
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JMFF020A15+           CTGCGGTGGCCGGACACGGCGGCGGACTTCGAGCTTTAAGCGAGCGCTTCCAGTATCCCC
JMSF018F05-           CTGCGGTGGCCGGACACGGCGGCGGACTTCGAGCTTTAAGCGAGCGCTTCCAGTATCCCC
JMSF010M17+           CTGCGGTGGCCGGACACGGCGGCGGACTTCGAGCTTTAAGCGAGCGCTTCCAGTATCCCC
                      ____________________________________________________________
consensus             CTGCGGTGGCCGGACACGGCGGCGGACTTCGAGCTTTAAGCGAGCGCTTCCAGTATCCCC
 
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JMFF020A15+           ACCGTAATGCACCGGATCAACTTCTTTGCTGCTA                          
JMSF018F05-           ACCGTAATGCACCGGATCAACTTCTTTGCTGCTA                          
JMSF010M17+           ACCGTAATGCACCGGATCAACTTCTTTGCTGCTATGCTAGTGACGGAGTGAAATGAGCTC
                      ____________________________________________________________
consensus             ACCGTAATGCACCGGATCAACTTCTTTGCTGCTATGCTAGTGACGGAGTGAAATGAGCTC