| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002E09 | Sequence | 662 | 013259 (25) | gb|KDP33374.1| | 3e-71 | hypothetical protein JCGZ_12923 [Jatropha curcas] | 687 | 013259 (25) | ref|XP_009795521.1| | 3e-100 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s |
| JMFF010N05 | Sequence | 593 | 013259 (25) | gb|KDP33374.1| | 1e-71 | hypothetical protein JCGZ_12923 [Jatropha curcas] | 702 | 013259 (25) | ref|XP_009795521.1| | 5e-100 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s |
| JMFF025H13 | Sequence | 564 | 013259 (25) | ref|XP_009785673.1| | 2e-66 | PREDICTED: PHD finger protein ING1 isoform X2 [Nicotiana sylvestris] | 792 | 011453 (3) | ref|XP_004247811.1| | 2e-89 | PREDICTED: PHD finger protein ING1 [Solanum lycopersicum] |
| JMFF040C11 | Sequence | 584 | 013259 (25) | ref|XP_009795521.1| | 1e-76 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | 701 | 013259 (25) | ref|XP_009795521.1| | 5e-101 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s |
| JMFF040O16 | Sequence | 511 | 013259 (25) | ref|XP_009795521.1| | 4e-35 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | 700 | 013259 (25) | ref|XP_009795521.1| | 2e-71 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s |
| JMFF047K02 | Sequence | 429 | 013259 (25) | ref|XP_009785673.1| | 1e-55 | PREDICTED: PHD finger protein ING1 isoform X2 [Nicotiana sylvestris] | 373 | 013259 (25) | ref|XP_009111256.1| | 6e-37 | PREDICTED: photosystem I reaction center subunit II-1, chloroplastic [Brassica |
| JMFF050L09 | Sequence | 607 | 013259 (25) | ref|XP_009795521.1| | 2e-87 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | 508 | 013259 (25) | ref|XP_009621208.1| | 5e-91 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana t |
| JMFF051F22 | Sequence | 546 | 013259 (25) | ref|XP_009795521.1| | 5e-69 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | 372 | 013259 (25) | ref|XP_009111256.1| | 5e-55 | PREDICTED: photosystem I reaction center subunit II-1, chloroplastic [Brassica |
| JMFF051N03 | Sequence | 629 | 000300 (22) | ref|XP_009794650.1| | 4e-106 | PREDICTED: floral homeotic protein PMADS 1 [Nicotiana sylvestris] emb|CAA65288.1 | 504 | 013259 (25) | ref|XP_009111256.1| | 4e-77 | PREDICTED: photosystem I reaction center subunit II-1, chloroplastic [Brassica |
| JMFN018J15 | Sequence | 574 | 013259 (25) | ref|XP_009795521.1| | 4e-91 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | |||||
| JMFN036E17 | Sequence | 591 | 013259 (25) | ref|XP_009795521.1| | 2e-90 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | |||||
| JMSF008N17 | Sequence | 283 | 013259 (25) | 646 | 013259 (25) | ref|XP_009795521.1| | 2e-101 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | |||
| JMSF009L16 | Sequence | 358 | 013259 (25) | ref|XP_009609788.1| | 2e-41 | PREDICTED: PHD finger protein ING1-like, partial [Nicotiana tomentosiformis] | 740 | 011453 (3) | ref|XP_006589054.1| | 3e-43 | PREDICTED: PHD finger protein ING1-like isoform X2 [Glycine max] |
| JMSF038I14 | Sequence | 636 | 013259 (25) | ref|XP_009795521.1| | 1e-93 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | 722 | 013259 (25) | ref|XP_009795521.1| | 2e-106 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s |
| JMSF052A24 | Sequence | 615 | 013259 (25) | ref|XP_009795521.1| | 6e-89 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s | 753 | 013259 (25) | ref|XP_009795521.1| | 3e-106 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nicotiana s |
This contig is upended
. : . : . : . : . : . :
rJMFF047K02- CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCTTTTTTT
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCTTTTTTT
. : . : . : . : . : . :
rJMFF047K02- TTTTTTTTTTAAAATCCATATTGTTTTGGTTTGAAATATAGCATAAAATTACAGTGAAGA
rJMFF051F22- GGTTTGAAATATAGCATAAAATTACAGTGAAGA
rJMFF051N03- TAAAATCCATATTGTTTTGGTTTGAAATATAGCATAAAATTACAGTGAAGA
rJMFF002E09- AATATAGCATAAAATTACAGTGAAGA
rJMFF010N05- AATATAGCATAAAATTACAGTGAAGA
rJMFF050L09- GGTTTGAAATATAGCATAAAATTACAGTGAAGA
rJMFF040O16- GGTTTGAAATATAGCATAAAATTACAGTGAAGA
rJMFF040C11- AATATAGCATAAAATTACAGTGAAGA
____________________________________________________________
consensus TTTTTTTTTTAAAATCCATATTGTTTTGGTTTGAAATATAGCATAAAATTACAGTGAAGA
. : . : . : . : . : . :
rJMFF047K02- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMFF051F22- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMFF051N03- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMFF002E09- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMFF010N05- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMFF050L09- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMFF040O16- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMFF040C11- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMSF008N17- ATGATCACAAATGGACATACATTACATTTTGCAGCTGAAGCAAA
rJMSF052A24- AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
rJMSF038I14- TACATTACATTTTGCAG-TGAAGCAAA
____________________________________________________________
consensus AAGGAGTAAATATTAGATGATCACAAATGGACATACATTACATTTTGCAG-TGAAGCAAA
. : . : . : . : . : . :
rJMFF047K02- AGCTCACAAATCGTAAACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
rJMFF051F22- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCCCAATCGGACTGATATTCTT
rJMFF051N03- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
rJMFF002E09- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
rJMFF010N05- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
rJMFF050L09- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
rJMFF040O16- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
rJMFF040C11- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
rJMSF008N17- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
JMFN036E17+ TT
JMFN018J15+ TATTCTT
rJMSF052A24- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
rJMSF038I14- AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
____________________________________________________________
consensus AGCTCACAAATCGTAGACCTGTTTTCCGGTGAACTTCACCTCAATCGGACTGATATTCTT
. : . : . : . : . : . :
rJMFF047K02- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMFF051F22- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMFF051N03- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMFF002E09- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMFF010N05- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMFF050L09- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMFF040O16- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMFF040C11- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMSF008N17- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
JMSF052A24+ TGCCCGACCCCTTCACGNCCGGCGTTCACCTTCTCCGGGTA
JMFN036E17+ TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
JMFN018J15+ TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMSF052A24- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
JMSF038I14+ TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
JMFF050L09+ CCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
rJMSF038I14- TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
____________________________________________________________
consensus TCCGATGGACCTCATGTTCTGCCCGACCCCTTCACGCCCGGCGTTCACCTTCTCCGGGTA
. : . : . : . : . : . :
rJMFF047K02- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMFF051F22- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMFF051N03- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMFF002E09- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMFF010N05- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMFF050L09- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMFF040O16- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMFF040C11- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMSF008N17- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
JMSF052A24+ AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
JMFN036E17+ AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
JMFN018J15+ AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
rJMSF052A24- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
JMSF038I14+ AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
JMFF050L09+ AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
JMFF051F22+ ACCTCGCCGTGGGGAAAAACCCTGTAGAATTG
rJMSF038I14- AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
JMFF040C11+ CCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
____________________________________________________________
consensus AACTCCGTCCTTGGGGTGCAAGTATTGGACCTCGCCGTTGGGGAAAACCCTGTAGAATTG
. : . : . : . : . : . :
rJMFF047K02- GTAGTTGATCTTGTACTTGGATCTC
rJMFF051F22- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMFF051N03- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMFF002E09- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMFF010N05- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMFF050L09- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMFF040O16- GCAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMFF040C11- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMSF008N17- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
JMSF052A24+ GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
JMFN036E17+ GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
JMFN018J15+ GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMSF052A24- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
JMSF038I14+ GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
JMFF050L09+ GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
JMFF051F22+ GTAGTTGATCTNGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
rJMSF038I14- GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
JMFF040C11+ GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
JMFF040O16+ CCCAGAGCCAAACACTGCTCTTTCCT
____________________________________________________________
consensus GTAGTTGATCTTGTACTTGGATCTCAGCCGTGTACCCAGAGCCAAACACTGCTCTTTCCT
. : . : . : . : . : . :
rJMFF051F22- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGC
rJMFF051N03- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
rJMFF002E09- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
rJMFF010N05- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
rJMFF050L09- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
rJMFF040O16- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATAATGGCGGCGCCGCCGGTGGGCATCTC
rJMFF040C11- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
rJMSF008N17- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
JMSF052A24+ CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
JMFN036E17+ CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
JMFN018J15+ CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
rJMSF052A24- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
JMSF038I14+ CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
JMFF050L09+ CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
JMFF051F22+ CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
rJMSF038I14- CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
JMFF040C11+ CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
JMFF040O16+ CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATAATGGCGGCGCCGCCGGTGGGCATCTC
____________________________________________________________
consensus CGCTAATTTCAGCAGGTTTGCTCCCTCCCTCATGATGGCGGCGCCGCCGGTGGGCATCTC
. : . : . : . : . : . :
rJMFF051N03- GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
rJMFF002E09- GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
rJMFF010N05- GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
rJMFF050L09- GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGNGCCTT
rJMFF040O16- GAAGATCTGC----TGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
rJMFF040C11- GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
rJMSF008N17- GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
JMSF052A24+ GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
JMFN036E17+ GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
JMFN018J15+ GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
rJMSF052A24- GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
JMSF038I14+ GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
JMFF050L09+ GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
JMFF051F22+ GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
rJMSF038I14- GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
JMFF040C11+ GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
JMFF040O16+ GAAGATCTGC----TGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
____________________________________________________________
consensus GAAGATCTGCTCCTTGGGGGAGGTCCACGTGATGACGTAGAACTCCTCGACCTGGGCCTT
. : . : . : . : . : . :
rJMFF051N03- GC
rJMFF002E09- GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
rJMFF010N05- GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
rJMFF050L09- GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCA
rJMFF040O16- GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
rJMFF040C11- GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
rJMSF008N17- GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
JMSF052A24+ GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
JMFN036E17+ GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
JMFN018J15+ GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
rJMSF052A24- GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
JMSF038I14+ GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
JMFF050L09+ GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
JMFF051F22+ GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
rJMSF038I14- GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
JMSF008N17+ TCCAGGGT
JMFF040C11+ GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
JMFF040O16+ GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
____________________________________________________________
consensus GCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGGGACGGGGTGTTGGGATCCAGGGT
. : . : . : . : . : . :
rJMFF002E09- CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
rJMFF010N05- CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
rJMFF040O16- CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
rJMFF040C11- CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
rJMSF008N17- CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMSF052A24+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMFN036E17+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMFN018J15+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
rJMSF052A24- CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMSF038I14+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMFF050L09+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMFF051F22+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
rJMSF038I14- CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMSF008N17+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMFF040C11+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
JMFF040O16+ CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
____________________________________________________________
consensus CGGCGGGGTGAACCCCACGGGGGCCTCTTTGGTGGGCGCCTCCGTGGTTTCCTCCGCCAT
. : . : . : . : . : . :
rJMFF002E09- GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCANTCCCCTGGGCACNACNGA
rJMFF010N05- GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
rJMFF040O16- GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACNGA
rJMFF040C11- GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
rJMSF008N17- GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMSF052A24+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMFN036E17+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMFN018J15+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
rJMSF052A24- GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMSF038I14+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMFF050L09+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMFF051F22+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTCCAGTCCCCTGGGCACGACGGA
rJMSF038I14- GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMSF008N17+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMFF040C11+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
JMFF040O16+ GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
____________________________________________________________
consensus GGCCCGGATGGGGCGGCACGGCGCGGTGGTGGACTTGTTCAGTCCCCTGGGCACGACGGA
. : . : . : . : . : . :
rJMFF002E09- NAANCANTGGAGGGACTGCTTCCAGGGCGCCGCCAC
rJMFF010N05- NAANCANTGGAGGGACTGCTTCCAGGGCGCCGCCACNCGGTCGGCTGC
rJMFF040O16- GAANCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCNGNCTTGGCGGC
rJMFF040C11- GAANCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
rJMSF008N17- GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMSF052A24+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMFN036E17+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMFN018J15+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
rJMSF052A24- GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMSF038I14+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMFF050L09+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMFF051F22+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
rJMSF038I14- GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMSF008N17+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMFF040C11+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
JMFF040O16+ GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
____________________________________________________________
consensus GAAGCAGTGGAGGGACTGCTTCCAGGGCGCCGCCACGCGGTCGGCTGCGGGCTTGGCGGC
. : . : . : . : . : . :
rJMFF040C11- GGA
rJMSF008N17- GG
JMSF052A24+ GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
JMFN036E17+ GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGG
JMFN018J15+ GGAGAGCGGCGAGGCGAAGAGAGAGGC
rJMSF052A24- GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
JMSF038I14+ GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
JMFF050L09+ GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
JMFF051F22+ GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
rJMSF038I14- GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
JMSF008N17+ GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
JMFF040C11+ GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
JMFF040O16+ GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
JMFF002E09+ AGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGGCCCATGGAAATGAAGAAGG
____________________________________________________________
consensus GGAGAGCGGCGAGGCGAAGAGAGAGGCTTGGGCTGCCATGG-CCATGGAAATGAAGAAGG
. : . : . : . : . : . :
JMSF052A24+ TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATG
rJMSF052A24- TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATG
JMSF038I14+ TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATGTGT
JMFF050L09+ TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATGT
JMFF051F22+ TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATGTG
rJMSF038I14- TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATGTGT
JMSF008N17+ TCGAG--GAGGAGATCAAAGAGGGAAGTGAATGTGT
JMFF040C11+ TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATGTGTGGA
JMFF040O16+ TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATGTGTGGA
JMFF010N05+ TTGGATCAACAGGTAGATCC
JMFF002E09+ TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATGTGTGGACTTGGATCAACAGGTAGATCC
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consensus TCGAGGCGAGGAGATCAAAGAGGGAAGTGAATGTGTGGACTTGGATCAACAGGTAGATCC
. : . : . : . : . : . :
JMFF010N05+ AAATCCATACCGGTTGGGTTAGCTGCGGGTGTTGCTGTTGCAAGACGAGTCTTTTTACGG
JMFF002E09+ AAATCCATACCGGTTGGGTTAGCTGCGGGTGTTGCTGTTGCAAGACGAGTCTTTTTACGG
JMFF025H13+ TGGGTTAGCTGCGGGTGTTGCTGTTGCAAGACGAGTCTTTTTACGG
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consensus AAATCCATACCGGTTGGGTTAGCTGCGGGTGTTGCTGTTGCAAGACGAGTCTTTTTACGG
. : . : . : . : . : . :
JMFF010N05+ CCCCCTTTGCTACTATCACCAGATCTTCCAGATTTCACATTGTTGTCAACATTTGAAGTA
JMFF047K02+ TTTGAAGTA
JMFF002E09+ CCCCCTTTGCTACTATCACCAGATCTTCCAGATTTCACATTGTTGTCAACATTTGAAGTA
JMFF025H13+ CCCCCTTTGCTACTATCACCAGATCTTCCAGATTTCACATTGTTGTCAACATTTGAAGTA
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consensus CCCCCTTTGCTACTATCACCAGATCTTCCAGATTTCACATTGTTGTCAACATTTGAAGTA
. : . : . : . : . : . :
JMFF010N05+ GTTGAACCTGTGGCTACTGCATTTTCTCTCTCTGCAACTCTACGGAGCTCCTCATCAAAT
JMFF047K02+ GTTGAACCTGTGGCTACTGCATTTTCTCTCTCTGCAACTCTACGGAGCTCCTCATCAAA-
JMFF002E09+ GTTGAACCTGTGGCTACTGCATTTTCTCTCTCTGCAACTCTACGGAGCTCCTCATCAAAT
JMFF025H13+ GTTGAACCTGTGGCTACTGCATTTTCTCTCTCTGCAACTCTACGGAGCTCCTCATCAAAT
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consensus GTTGAACCTGTGGCTACTGCATTTTCTCTCTCTGCAACTCTACGGAGCTCCTCATCAAAT
. : . : . : . : . : . :
JMFF010N05+ TTTTTCAAGTACTGATCAAGCTGTTGAATATGAGTATCTACTAGATCATATGCCTGAATA
JMFF047K02+ TTTTTCAAGTACTGATCAAGCTGTTGAATATGAGTATCTACTAGATCATATGCCTGAATA
JMFF002E09+ TTTTTCAAGTACTGATCAAGCTGTTGAATATGAGTATCTACTAGATCATATGCCTGAATA
JMFF025H13+ TTTTTCAAGTACTGATCAAGCTGTTGAATATGAGTATCTACTAGATCATATGCCTGAATA
____________________________________________________________
consensus TTTTTCAAGTACTGATCAAGCTGTTGAATATGAGTATCTACTAGATCATATGCCTGAATA
. : . : . : . : . : . :
JMFF010N05+ GCTAATGCAACTTTCTCGTCAGCAATCCTGATGGCATGCTTTTGTTCATCCAATGCATCA
JMFF047K02+ GCTAATGCAACTTTCTCGTCAGCAATCCTGATGGCATGCTTTTGTTCATCCAATGCATCA
JMFF002E09+ GCTAATGCAACTTTCTCGTCAGCAATCCTGATGGCATGCTTTTGTTCATCCAATGCATCA
JMFF025H13+ GCTAATGCAACTTTCTCGTCAGCAATCCTGATGGCATGCTTTTGTTCATCCAATGCATCA
JMSF009L16+ TAATGCAACTTTCTCGTCAGCAATCCTGATGGCATGCTTTTGTTCATCCAATGCATCA
____________________________________________________________
consensus GCTAATGCAACTTTCTCGTCAGCAATCCTGATGGCATGCTTTTGTTCATCCAATGCATCA
. : . : . : . : . : . :
JMFF010N05+ TCTGAGAACTTTATAAGTGATGAGTCTGATGCAATATTGCCACTCTTAATGCGTTGCTTC
JMFF047K02+ TCTGAGAACTTTATAAGTGATGAGTCTGATGCAATATTGCCACTCTTAATGCGTTGCTTC
JMFF002E09+ TCTGAGAACTTTATAAGTGATGAGTCTGATGCAATATTGCCACTCTTAATGCGTTGCTTC
JMFF025H13+ TCTGAGAACTTTATAAGTGATGAGTCTGATGCAATATTGCCACTCTTAATGCGTTGCTTC
JMSF009L16+ TCTGAGAACTTTATAAGTGATGAGTCTGATGCAATATTGCCACTCTTAATGCGTTGCTTC
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consensus TCTGAGAACTTTATAAGTGATGAGTCTGATGCAATATTGCCACTCTTAATGCGTTGCTTC
. : . : . : . : . : . :
JMFF010N05+ ATATCCTCTACTTCTAGTTGACAACGCTGATCATTTTGCCGCTGGACTTCTTGTAAACTT
JMFF047K02+ ATATCCTCTACTTCTAGTTGACAACGCTGATCATTTTGCCGCTGGACTTCTTGTAAACTT
JMFF002E09+ ATATCCTCTACTTCTAGTTGACAACGCTGATCATTTTGCCGCTGGACTTCTTGTAAACTT
JMFF025H13+ ATATCCTCTACTTCTAGTTGACAACGCTGATCATTTTGCCGCTGGACTTCTTGTAAACTT
JMSF009L16+ ATATCCTCTACTTCTAGTTGACAACGCTGATCATTTTGCCGCTGGACTTCTTGTAAACTT
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consensus ATATCCTCTACTTCTAGTTGACAACGCTGATCATTTTGCCGCTGGACTTCTTGTAAACTT
. : . : . : . : . : . :
JMFF010N05+ CTATCAAGATCACGCATCAATCCATACTTCTTCTGTAGTATATTTGGCAGCACTTCCAAA
JMFF047K02+ CTATCAAGATCACGCATCAATCCATACTTCTTCTGTAGTATATTTGGCAGCACTTCCAAA
JMFF002E09+ CTATCAAGATCACGCATCAATCCATACTTCTTCTGTAGTATATTTGGCAGCACTTCCAAA
JMFF025H13+ CTATCAAGATCACGCATCAATCCATACTTCTTCTGTAGTATATTTGGCAGCACTTCCAAA
JMSF009L16+ CTATCAAGATCACGCATCAATCCATACTTCTTCTGTAGTATATTTGGCAGCACTTCCAAA
____________________________________________________________
consensus CTATCAAGATCACGCATCAATCCATACTTCTTCTGTAGTATATTTGGCAGCACTTCCAAA
. : . : . : . : . : . :
JMFF010N05+ TTGGTTTCAAATTCATCAATGAAGGACATCCTTTTGCAGCAAAATCTATTGATTTTGCAG
JMFF047K02+ TTGGTTTCAAATTCATCAATGAAGGACATCCTTTTGCAGCAAAATCTATTGATTTTGCAG
JMFF002E09+ TTGGTTTCAAATTCATCAATGAAGGACATCCTTTTGCAGCAAAATCTATTGATTTTGCAG
JMFF025H13+ TTGGTTTCAAATTCATCAATGAAGGACATCCTTTTGCAGCAAAATCTATTGATTTTGCAG
JMSF009L16+ TTGGTTTCAAATTCATCAATGAAGGACATCCTTTTGCAGCAAAATCTATTGATTTTGCAG
____________________________________________________________
consensus TTGGTTTCAAATTCATCAATGAAGGACATCCTTTTGCAGCAAAATCTATTGATTTTGCAG
. : . : . : . : . : . :
JMFF010N05+ AAAG
JMFF047K02+ A
JMFF002E09+ AAAG
JMFF025H13+ AAAGCGTTTGGAATGAGCTTCGAGGTACGAGGAT
JMSF009L16+ AAAGCGTTTGGAATGAGCTTCGAGGTACGAGGATTAGCAAATATCGGTTGGAAACCCCCC
____________________________________________________________
consensus AAAGCGTTTGGAATGAGCTTCGAGGTACGAGGATTAGCAAATATCGGTTGGAAACCCCCC