Contig 013254:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001H23Sequence149013254 (3)668007016 (3)gb|KDP25046.1|3e-59hypothetical protein JCGZ_22581 [Jatropha curcas]
JMSF002N23Sequence306013254 (3)597007016 (3)ref|XP_008782802.1|6e-19PREDICTED: pumilio homolog 5-like isoform X2 [Phoenix dactylifera]
JMSF009E14Sequence420013254 (3)733007016 (3)emb|CDO97724.1|1e-85unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF009E14+                                                                      T
                      ____________________________________________________________
consensus                                                                        T
 
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JMSF009E14+           AAAAGCAACCCCAACTTATCTACTGTCATGTCATTTATCGAGTTTGCATGTGGCAGAATA
                      ____________________________________________________________
consensus             AAAAGCAACCCCAACTTATCTACTGTCATGTCATTTATCGAGTTTGCATGTGGCAGAATA
 
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JMSF002N23+                                                     TCCAGTATCCTCATAGGA
JMSF009E14+           ACATCCTTGGAAGAAAACCATTCCCCAGGTGGTCTACCACTTTCCAGTATCCTCATAGGA
                      ____________________________________________________________
consensus             ACATCCTTGGAAGAAAACCATTCCCCAGGTGGTCTACCACTTTCCAGTATCCTCATAGGA
 
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JMSF002N23+           ATTTCAGTTGTCATGTTGGTTGAAGAACAGAATTACGTCCTCTCCTCTGTCAATTATGAG
JMSF009E14+           ATTTCAGTTGTCATGTTGGTTGAAGAACAGAATTACGTCCTCTCCTCTGTCAATTATGAG
                      ____________________________________________________________
consensus             ATTTCAGTTGTCATGTTGGTTGAAGAACAGAATTACGTCCTCTCCTCTGTCAATTATGAG
 
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JMSF002N23+           CTTTTACCCAAGACCCTCAGAGGCTGGTGCTCAGGCAGAAGCTCCCGACGCTGACAATGA
JMSF009E14+           CTTTTACCCAAGACCCTCAGAGGCTGGTGCTCAGGCAGAAGCTCCCGACGCTGACAATGA
                      ____________________________________________________________
consensus             CTTTTACCCAAGACCCTCAGAGGCTGGTGCTCAGGCAGAAGCTCCCGACGCTGACAATGA
 
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JMSF002N23+           TGATGGTGAAGTAATCATGAAGTAATGATCAGGTCAATCCATCGAAATTTCTGCAGAGCA
JMSF001H23+                               AGTAATGATCNGGTCANTCCATCGAAATTTCTGCAGAGCA
JMSF009E14+           TGATGGTGAAGTAATCATGAAGTAATGATCAGGTCAATCCATCGAAATTTCTGCAGAGCA
                      ____________________________________________________________
consensus             TGATGGTGAAGTAATCATGAAGTAATGATCAGGTCAATCCATCGAAATTTCTGCAGAGCA
 
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JMSF002N23+           GGGCAGAGAAAGAGCATGAAAGAATGCA-GAGAGAGAGAGAGAGAGAGAGAGAGTTTTCT
JMSF001H23+           GGGCAGAGAAAGAGCATGAAAGAATGCACGAGAGAGAGAGAGAGAGAGAGAGAGTTTTCT
JMSF009E14+           GGGCAGAGAAAGAGCATGAAAGAATGCA-GAGAGAGAGAGAGAGAGAGAGAGAGTTTTCT
                      ____________________________________________________________
consensus             GGGCAGAGAAAGAGCATGAAAGAATGCA-GAGAGAGAGAGAGAGAGAGAGAGAGTTTTCT
 
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JMSF002N23+           TGTCTGCTTGAAGAGAGAGAAAGAGAGTAGAAATAACAAATGTCGCT             
JMSF001H23+           TGTCTGCTTGAAGAGAGAGAAAGAGAGTNGAAATAACAAATGTCGCT             
JMSF009E14+           TGTCTGCTTGAAGAGAGAGAAAGAGAGTAGAAATAACAAATGTCGCTTGCAAAAACCACC
                      ____________________________________________________________
consensus             TGTCTGCTTGAAGAGAGAGAAAGAGAGTAGAAATAACAAATGTCGCTTGCAAAAACCACC