Contig 013249:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS115A03Sequence559013249 (3)ref|XP_006357303.1|7e-19PREDICTED: RING finger and transmembrane domain-containing protein 2-like isofo
JMSF008F16Sequence258013249 (3)765023444ref|XP_009783875.1|3e-91PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Nico
JMSF016H07Sequence242013249 (3)

Alignment

This contig is upended


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JMFS115A03+              AAGAGGAGCAATGAAAATGGAAGAACTTGCTCAATCCACCTAGCAATCTGCTGTATA
                      ____________________________________________________________
consensus                AAGAGGAGCAATGAAAATGGAAGAACTTGCTCAATCCACCTAGCAATCTGCTGTATA
 
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JMFS115A03+           TCATATCTCTGGTAGGAAGAATCACTACTAGTCCCACTGCCACTTTCCCCGGCGCCGGAA
                      ____________________________________________________________
consensus             TCATATCTCTGGTAGGAAGAATCACTACTAGTCCCACTGCCACTTTCCCCGGCGCCGGAA
 
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JMFS115A03+           TCCACCATCATTCTAGNTGCCTCCTCACCGCCCACACCCCTCTCCTCCACCCCAGCCTCA
                      ____________________________________________________________
consensus             TCCACCATCATTCTAGNTGCCTCCTCACCGCCCACACCCCTCTCCTCCACCCCAGCCTCA
 
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JMFS115A03+           CCTCCACGCGCCGCCGCCGCCTCGTCATCCTCAATCCCCACCCGATCCTGCTCAGCTGTT
                      ____________________________________________________________
consensus             CCTCCACGCGCCGCCGCCGCCTCGTCATCCTCAATCCCCACCCGATCCTGCTCAGCTGTT
 
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JMFS115A03+           CCAATTATCCTAATCGTAACCTCCCCACTCCCACGAGTCCCTGCATCCGAGTTCCCGGGC
                      ____________________________________________________________
consensus             CCAATTATCCTAATCGTAACCTCCCCACTCCCACGAGTCCCTGCATCCGAGTTCCCGGGC
 
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JMFS115A03+           TCAGTAGCATCCGGTAGCAGAGCCATGCTCTCAGAGCTGTCGGGCTGAACCCGGAGAATC
                      ____________________________________________________________
consensus             TCAGTAGCATCCGGTAGCAGAGCCATGCTCTCAGAGCTGTCGGGCTGAACCCGGAGAATC
 
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JMFS115A03+           CCAGAGTACTCTAACAAGGTGGAAACCGGGAACCGGAAGAACCGAAGTGGAGGCCACACA
JMSF016H07+                                                                  ACACA
JMSF008F16+                                                     CGAAGTGGAGGCCACACA
                      ____________________________________________________________
consensus             CCAGAGTACTCTAACAAGGTGGAAACCGGGAACCGGAAGAACCGAAGTGGAGGCCACACA
 
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JMFS115A03+           GGAATACTGCTCGGAGACGAAGGCGAAGAAGACGACGACACTGAATCCGACCCAGACCCA
JMSF016H07+           GGAATACTGCTCGGAGACGAAGGCGAAGAAGACGACGACACTGAATCCGACCCAGACCCA
JMSF008F16+           GGAATACTGCTCGGAGACGAAGGCGAAGAAGACGACGACACTGAATCCGACCCAGACCCA
                      ____________________________________________________________
consensus             GGAATACTGCTCGGAGACGAAGGCGAAGAAGACGACGACACTGAATCCGACCCAGACCCA
 
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JMFS115A03+           TTCGTTGTTTCCATTGAAGAAACCCAAAAACCGCTCAAACAAGCTTAAAGATTGGATTTT
JMSF016H07+           TTCGTTGTTTCCATTGAAGAAACCCAAAAACCGCTCAAACAAGCTTAAAGATTGGATTTT
JMSF008F16+           TTCGTTGTTTCCATTGAAGAAACCCAAAAACCGCTCAAACAAGCTTAAAGATTGGATTTT
                      ____________________________________________________________
consensus             TTCGTTGTTTCCATTGAAGAAACCCAAAAACCGCTCAAACAAGCTTAAAGATTGGATTTT
 
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JMFS115A03+           TTAGCAAAAAAATT                                              
JMSF016H07+           TTAGCAAAAAAATTTGGAATTTCTTGGAGACGAAGGATGTTTTACAGAGAAACGTTCAAA
JMSF008F16+           TTAGCAAAAAAATTTGGAATTTCTTGGAGACGAAGGATGTTTTACAGAGAAACGTTCAAA
                      ____________________________________________________________
consensus             TTAGCAAAAAAATTTGGAATTTCTTGGAGACGAAGGATGTTTTACAGAGAAACGTTCAAA
 
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JMSF016H07+           CAAGAAGAATGAATAATAGTCAGAGGACTAAGATAAGAAAAAAATTGTTCCTAAAC    
JMSF008F16+           CAAGAAGAATGAATAATAGTCAGAAGACTAAGATAAGAAAAAAATTGTTCCTAAACAACC
                      ____________________________________________________________
consensus             CAAGAAGAATGAATAATAGTCAGAGGACTAAGATAAGAAAAAAATTGTTCCTAAACAACC